EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004723 (Gene tree)
Gene ID: -
Gene Symbol: sap-49
Alias: -
Full Name: Splicing factor 3B subunit 4
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 1518 bases
Position: chrII:8034250-8035767
Accession: Q09442
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C08B11	RRM_1	PF00076.22	3.8e-37	1	2
C08B11	RRM_1	PF00076.22	3.8e-37	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C08B11.5	-	1396	NM_001026761	C08B11.5	388 (aa)	NP_001021932	Q09442

Gene Model

Click here to download WBGene00004723's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004723's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004723	sap-49	75	35.583	WBGene00003903	pab-2	63	36.275

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004723	sap-49	54	81.991	ENSAPOG00000017647	sf3b4	64	72.835	Acanthochromis_polyacanthus
WBGene00004723	sap-49	55	80.751	ENSACIG00000018455	sf3b4	66	78.571	Amphilophus_citrinellus
WBGene00004723	sap-49	54	81.991	ENSAOCG00000019801	sf3b4	64	73.228	Amphiprion_ocellaris
WBGene00004723	sap-49	54	81.991	ENSAPEG00000010365	sf3b4	64	73.228	Amphiprion_percula
WBGene00004723	sap-49	54	81.991	ENSATEG00000012844	sf3b4	63	72.835	Anabas_testudineus
WBGene00004723	sap-49	55	81.690	ENSAMXG00000008282	sf3b4	71	65.878	Astyanax_mexicanus
WBGene00004723	sap-49	54	81.991	ENSCAFG00000011617	SF3B4	58	64.685	Canis_familiaris
WBGene00004723	sap-49	54	81.991	ENSCAFG00020019775	SF3B4	58	64.685	Canis_lupus_dingo
WBGene00004723	sap-49	52	62.687	ENSCHIG00000006654	-	60	57.806	Capra_hircus
WBGene00004723	sap-49	58	76.106	ENSCING00000002337	-	61	75.546	Ciona_intestinalis
WBGene00004723	sap-49	54	79.286	ENSCSAVG00000007809	-	97	74.317	Ciona_savignyi
WBGene00004723	sap-49	55	81.690	ENSDARG00000018574	sf3b4	64	72.441	Danio_rerio
WBGene00004723	sap-49	56	79.167	FBgn0015818	Spx	70	72.000	Drosophila_melanogaster
WBGene00004723	sap-49	54	81.991	ENSELUG00000012876	sf3b4	63	73.228	Esox_lucius
WBGene00004723	sap-49	54	81.991	ENSGMOG00000002519	sf3b4	83	67.254	Gadus_morhua
WBGene00004723	sap-49	55	81.690	ENSGALG00000013352	SF3B4	51	81.395	Gallus_gallus
WBGene00004723	sap-49	56	72.222	ENSGGOG00000038845	-	66	64.062	Gorilla_gorilla
WBGene00004723	sap-49	55	81.221	ENSHCOG00000003014	sf3b4	61	74.597	Hippocampus_comes
WBGene00004723	sap-49	54	81.991	ENSIPUG00000012242	Sf3b4	61	75.203	Ictalurus_punctatus
WBGene00004723	sap-49	68	70.722	ENSKMAG00000008154	sf3b4	68	71.429	Kryptolebias_marmoratus
WBGene00004723	sap-49	55	80.465	ENSLACG00000004436	SF3B4	59	80.465	Latimeria_chalumnae
WBGene00004723	sap-49	54	81.991	ENSLOCG00000009048	sf3b4	79	57.229	Lepisosteus_oculatus
WBGene00004723	sap-49	54	81.991	ENSLAFG00000008531	SF3B4	51	81.395	Loxodonta_africana
WBGene00004723	sap-49	93	46.917	ENSMFAG00000039067	-	57	62.911	Macaca_fascicularis
WBGene00004723	sap-49	93	46.381	ENSMNEG00000031526	-	57	62.441	Macaca_nemestrina
WBGene00004723	sap-49	55	81.690	ENSMAMG00000014692	sf3b4	67	71.805	Mastacembelus_armatus
WBGene00004723	sap-49	55	81.308	ENSMGAG00000000653	SF3B4	52	81.395	Meleagris_gallopavo
WBGene00004723	sap-49	53	80.000	ENSMOCG00000014155	-	53	77.674	Microtus_ochrogaster
WBGene00004723	sap-49	54	81.991	ENSNBRG00000013865	sf3b4	82	58.663	Neolamprologus_brichardi
WBGene00004723	sap-49	54	75.355	ENSNLEG00000000537	-	55	74.884	Nomascus_leucogenys
WBGene00004723	sap-49	55	69.585	ENSOANG00000004768	-	50	69.585	Ornithorhynchus_anatinus
WBGene00004723	sap-49	55	81.690	ENSORLG00000003062	sf3b4	55	81.395	Oryzias_latipes
WBGene00004723	sap-49	55	81.690	ENSOMEG00000013694	sf3b4	75	61.392	Oryzias_melastigma
WBGene00004723	sap-49	54	67.143	ENSOARG00000007368	-	53	65.022	Ovis_aries
WBGene00004723	sap-49	55	73.239	ENSPPAG00000030024	-	61	65.863	Pan_paniscus
WBGene00004723	sap-49	55	73.709	ENSPTRG00000049727	-	62	66.265	Pan_troglodytes
WBGene00004723	sap-49	54	81.991	ENSPKIG00000020669	sf3b4	75	67.785	Paramormyrops_kingsleyae
WBGene00004723	sap-49	55	81.690	ENSPFOG00000005754	sf3b4	67	71.321	Poecilia_formosa
WBGene00004723	sap-49	55	81.690	ENSPLAG00000001401	sf3b4	73	71.321	Poecilia_latipinna
WBGene00004723	sap-49	54	78.846	ENSPCAG00000000392	SF3B4	50	78.846	Procavia_capensis
WBGene00004723	sap-49	55	81.690	ENSPNAG00000000686	sf3b4	89	58.621	Pygocentrus_nattereri
WBGene00004723	sap-49	54	81.991	ENSSFOG00015008864	sf3b4	62	73.228	Scleropages_formosus
WBGene00004723	sap-49	54	81.991	ENSSDUG00000012064	sf3b4	63	73.228	Seriola_dumerili
WBGene00004723	sap-49	54	81.991	ENSSLDG00000014226	sf3b4	63	73.228	Seriola_lalandi_dorsalis
WBGene00004723	sap-49	55	53.953	ENSSSCG00000039440	-	61	50.000	Sus_scrofa
WBGene00004723	sap-49	54	81.991	ENSTGUG00000004470	SF3B4	85	81.395	Taeniopygia_guttata
WBGene00004723	sap-49	83	63.467	ENSTRUG00000004516	sf3b4	68	70.370	Takifugu_rubripes
WBGene00004723	sap-49	54	81.991	ENSTNIG00000009156	sf3b4	80	64.151	Tetraodon_nigroviridis
WBGene00004723	sap-49	53	79.126	ENSVVUG00000022697	-	51	70.782	Vulpes_vulpes
WBGene00004723	sap-49	54	81.991	ENSVVUG00000007732	-	55	81.395	Vulpes_vulpes