EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004880 (Gene tree)
Gene ID: -
Gene Symbol: smg-2
Alias: -
Full Name: Regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 14359 bases
Position: chrI:1176471-1190829
Accession: O76512
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48G8AL	UPF1_Zn_bind	PF09416.10	2e-62	1	1
Y48G8AL	UPF1_Zn_bind	PF09416.10	2e-62	1	1
Y48G8AL	UPF1_Zn_bind	PF09416.10	2e-62	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48G8AL.6.2	-	4677	-	Y48G8AL.6.2	1069 (aa)	-	O76512
Y48G8AL.6.3	-	3497	NM_058428	Y48G8AL.6.3	1069 (aa)	NP_490829	O76512
Y48G8AL.6.1	-	4298	NM_058428	Y48G8AL.6.1	1069 (aa)	NP_490829	O76512

Gene Model

Click here to download WBGene00004880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004880's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004880	smg-2	99	48.029	ENSG00000005007	UPF1	89	50.639	Homo_sapiens
WBGene00004880	smg-2	83	54.353	ENSAPOG00000023773	upf1	82	54.051	Acanthochromis_polyacanthus
WBGene00004880	smg-2	99	49.267	ENSAPOG00000010916	-	97	49.493	Acanthochromis_polyacanthus
WBGene00004880	smg-2	99	47.950	ENSAMEG00000011474	UPF1	89	50.342	Ailuropoda_melanoleuca
WBGene00004880	smg-2	94	51.275	ENSACIG00000010985	-	97	51.275	Amphilophus_citrinellus
WBGene00004880	smg-2	83	54.464	ENSACIG00000019949	upf1	81	54.688	Amphilophus_citrinellus
WBGene00004880	smg-2	83	54.353	ENSAOCG00000018519	upf1	82	54.018	Amphiprion_ocellaris
WBGene00004880	smg-2	99	49.493	ENSAOCG00000006352	-	97	49.755	Amphiprion_ocellaris
WBGene00004880	smg-2	99	49.493	ENSAPEG00000006292	-	97	49.853	Amphiprion_percula
WBGene00004880	smg-2	83	54.353	ENSAPEG00000016344	upf1	82	54.018	Amphiprion_percula
WBGene00004880	smg-2	83	54.353	ENSATEG00000017867	upf1	80	54.353	Anabas_testudineus
WBGene00004880	smg-2	99	49.032	ENSATEG00000016606	-	90	51.457	Anabas_testudineus
WBGene00004880	smg-2	90	50.780	ENSAPLG00000009175	UPF1	85	53.603	Anas_platyrhynchos
WBGene00004880	smg-2	94	49.661	ENSANAG00000024107	UPF1	83	52.519	Aotus_nancymaae
WBGene00004880	smg-2	89	51.484	ENSACLG00000007181	upf1	81	54.576	Astatotilapia_calliptera
WBGene00004880	smg-2	99	49.262	ENSACLG00000022630	-	97	49.354	Astatotilapia_calliptera
WBGene00004880	smg-2	83	54.374	ENSAMXG00000042187	upf1	81	54.596	Astyanax_mexicanus
WBGene00004880	smg-2	99	47.776	ENSBTAG00000020922	UPF1	89	50.441	Bos_taurus
WBGene00004880	smg-2	99	47.602	ENSCJAG00000019627	UPF1	89	50.146	Callithrix_jacchus
WBGene00004880	smg-2	99	47.649	ENSCAFG00000014578	UPF1	89	50.441	Canis_familiaris
WBGene00004880	smg-2	99	48.075	ENSCAFG00020012347	UPF1	89	50.940	Canis_lupus_dingo
WBGene00004880	smg-2	99	48.205	ENSCHIG00000011018	UPF1	89	50.940	Capra_hircus
WBGene00004880	smg-2	94	50.145	ENSTSYG00000008877	UPF1	85	53.055	Carlito_syrichta
WBGene00004880	smg-2	94	50.242	ENSCAPG00000005758	UPF1	83	53.055	Cavia_aperea
WBGene00004880	smg-2	99	48.559	ENSCPOG00000025463	UPF1	89	50.990	Cavia_porcellus
WBGene00004880	smg-2	99	48.029	ENSCCAG00000032175	UPF1	89	50.639	Cebus_capucinus
WBGene00004880	smg-2	94	50.145	ENSCATG00000040306	UPF1	84	53.611	Cercocebus_atys
WBGene00004880	smg-2	94	50.145	ENSCLAG00000004037	UPF1	85	53.611	Chinchilla_lanigera
WBGene00004880	smg-2	99	48.029	ENSCSAG00000005276	UPF1	89	50.639	Chlorocebus_sabaeus
WBGene00004880	smg-2	95	48.858	ENSCPBG00000012513	UPF1	89	50.996	Chrysemys_picta_bellii
WBGene00004880	smg-2	78	55.372	ENSCING00000021399	-	99	55.372	Ciona_intestinalis
WBGene00004880	smg-2	79	54.114	ENSCSAVG00000006533	-	78	54.114	Ciona_savignyi
WBGene00004880	smg-2	94	50.145	ENSCANG00000029819	UPF1	85	53.055	Colobus_angolensis_palliatus
WBGene00004880	smg-2	99	48.245	ENSCGRG00001021067	Upf1	89	50.889	Cricetulus_griseus_chok1gshd
WBGene00004880	smg-2	94	50.145	ENSCGRG00000013480	Upf1	86	53.055	Cricetulus_griseus_crigri
WBGene00004880	smg-2	99	49.401	ENSCSEG00000016159	-	90	51.859	Cynoglossus_semilaevis
WBGene00004880	smg-2	95	47.359	ENSCSEG00000017239	upf1	88	49.335	Cynoglossus_semilaevis
WBGene00004880	smg-2	99	49.677	ENSCVAG00000010561	upf1	81	55.345	Cyprinodon_variegatus
WBGene00004880	smg-2	83	54.485	ENSDARG00000016302	upf1	81	54.707	Danio_rerio
WBGene00004880	smg-2	80	55.086	ENSDORG00000009984	Upf1	79	55.086	Dipodomys_ordii
WBGene00004880	smg-2	84	52.407	FBgn0030354	Upf1	77	52.407	Drosophila_melanogaster
WBGene00004880	smg-2	56	47.749	ENSEBUG00000010069	upf1	97	48.071	Eptatretus_burgeri
WBGene00004880	smg-2	99	48.205	ENSEASG00005006549	UPF1	89	50.940	Equus_asinus_asinus
WBGene00004880	smg-2	99	48.205	ENSECAG00000010639	UPF1	89	50.940	Equus_caballus
WBGene00004880	smg-2	89	51.550	ENSELUG00000020917	upf1	86	55.125	Esox_lucius
WBGene00004880	smg-2	90	50.704	ENSELUG00000012916	-	89	50.805	Esox_lucius
WBGene00004880	smg-2	99	47.649	ENSFCAG00000009757	UPF1	89	50.441	Felis_catus
WBGene00004880	smg-2	90	51.179	ENSFALG00000009312	UPF1	84	53.506	Ficedula_albicollis
WBGene00004880	smg-2	94	50.048	ENSFDAG00000014816	UPF1	79	56.480	Fukomys_damarensis
WBGene00004880	smg-2	85	49.817	ENSFHEG00000016276	-	92	49.817	Fundulus_heteroclitus
WBGene00004880	smg-2	99	48.226	ENSFHEG00000006428	upf1	87	52.058	Fundulus_heteroclitus
WBGene00004880	smg-2	83	53.712	ENSGMOG00000007541	upf1	82	53.712	Gadus_morhua
WBGene00004880	smg-2	95	48.772	ENSGALG00000003220	UPF1	89	50.737	Gallus_gallus
WBGene00004880	smg-2	61	58.600	ENSGAFG00000015443	-	81	58.600	Gambusia_affinis
WBGene00004880	smg-2	99	49.401	ENSGAFG00000004831	upf1	97	49.585	Gambusia_affinis
WBGene00004880	smg-2	95	49.174	ENSGAGG00000022217	UPF1	88	51.837	Gopherus_agassizii
WBGene00004880	smg-2	94	50.635	ENSGGOG00000002608	UPF1	84	54.204	Gorilla_gorilla
WBGene00004880	smg-2	83	54.515	ENSHBUG00000008939	upf1	90	54.828	Haplochromis_burtoni
WBGene00004880	smg-2	81	49.943	ENSHBUG00000014694	upf1	89	50.057	Haplochromis_burtoni
WBGene00004880	smg-2	96	48.135	ENSHGLG00000010900	UPF1	89	50.490	Heterocephalus_glaber_female
WBGene00004880	smg-2	91	49.952	ENSHGLG00100005904	UPF1	82	52.735	Heterocephalus_glaber_male
WBGene00004880	smg-2	83	55.345	ENSHCOG00000008918	upf1	80	56.989	Hippocampus_comes
WBGene00004880	smg-2	83	54.374	ENSIPUG00000005108	UPF1	81	54.596	Ictalurus_punctatus
WBGene00004880	smg-2	99	48.029	ENSSTOG00000009196	UPF1	89	50.639	Ictidomys_tridecemlineatus
WBGene00004880	smg-2	99	47.811	ENSJJAG00000023151	Upf1	89	50.343	Jaculus_jaculus
WBGene00004880	smg-2	99	49.267	ENSKMAG00000004962	upf1	97	49.493	Kryptolebias_marmoratus
WBGene00004880	smg-2	83	54.042	ENSLBEG00000014862	upf1	80	54.153	Labrus_bergylta
WBGene00004880	smg-2	99	49.084	ENSLBEG00000027848	-	97	49.176	Labrus_bergylta
WBGene00004880	smg-2	83	54.788	ENSLOCG00000002072	upf1	81	54.900	Lepisosteus_oculatus
WBGene00004880	smg-2	99	47.907	ENSLAFG00000014963	UPF1	89	50.540	Loxodonta_africana
WBGene00004880	smg-2	99	47.943	ENSMFAG00000037748	UPF1	89	50.540	Macaca_fascicularis
WBGene00004880	smg-2	99	47.814	ENSMMUG00000023286	UPF1	89	50.391	Macaca_mulatta
WBGene00004880	smg-2	99	47.943	ENSMNEG00000000046	UPF1	89	50.540	Macaca_nemestrina
WBGene00004880	smg-2	94	50.145	ENSMLEG00000028404	UPF1	85	53.611	Mandrillus_leucophaeus
WBGene00004880	smg-2	99	49.217	ENSMAMG00000006231	-	90	51.558	Mastacembelus_armatus
WBGene00004880	smg-2	83	54.464	ENSMAMG00000006229	upf1	80	54.464	Mastacembelus_armatus
WBGene00004880	smg-2	83	54.353	ENSMZEG00005003489	upf1	87	51.689	Maylandia_zebra
WBGene00004880	smg-2	99	49.262	ENSMZEG00005016386	-	97	49.354	Maylandia_zebra
WBGene00004880	smg-2	90	50.439	ENSMGAG00000004745	UPF1	85	53.224	Meleagris_gallopavo
WBGene00004880	smg-2	94	50.145	ENSMAUG00000011398	Upf1	83	53.055	Mesocricetus_auratus
WBGene00004880	smg-2	99	48.897	ENSMICG00000001659	UPF1	89	51.518	Microcebus_murinus
WBGene00004880	smg-2	99	47.814	ENSMOCG00000005699	Upf1	89	50.391	Microtus_ochrogaster
WBGene00004880	smg-2	95	49.854	ENSMMOG00000007537	-	97	49.854	Mola_mola
WBGene00004880	smg-2	83	53.931	ENSMMOG00000007881	upf1	82	54.153	Mola_mola
WBGene00004880	smg-2	95	48.082	ENSMODG00000003689	UPF1	89	49.952	Monodelphis_domestica
WBGene00004880	smg-2	83	54.129	ENSMALG00000000144	upf1	83	54.129	Monopterus_albus
WBGene00004880	smg-2	99	48.587	ENSMALG00000018100	-	97	48.587	Monopterus_albus
WBGene00004880	smg-2	99	48.245	MGP_CAROLIEiJ_G0031142	Upf1	89	50.988	Mus_caroli
WBGene00004880	smg-2	99	48.245	ENSMUSG00000058301	Upf1	89	50.988	Mus_musculus
WBGene00004880	smg-2	99	48.245	MGP_PahariEiJ_G0021607	Upf1	89	50.988	Mus_pahari
WBGene00004880	smg-2	99	48.245	MGP_SPRETEiJ_G0032260	Upf1	89	50.988	Mus_spretus
WBGene00004880	smg-2	99	48.075	ENSMPUG00000015516	UPF1	89	50.940	Mustela_putorius_furo
WBGene00004880	smg-2	99	48.165	ENSMLUG00000012122	UPF1	89	51.039	Myotis_lucifugus
WBGene00004880	smg-2	99	47.772	ENSNGAG00000024107	Upf1	89	50.244	Nannospalax_galili
WBGene00004880	smg-2	99	47.467	ENSNBRG00000022069	-	97	50.245	Neolamprologus_brichardi
WBGene00004880	smg-2	83	54.171	ENSNBRG00000000670	upf1	82	54.394	Neolamprologus_brichardi
WBGene00004880	smg-2	94	47.495	ENSNLEG00000006062	UPF1	85	50.598	Nomascus_leucogenys
WBGene00004880	smg-2	72	52.696	ENSMEUG00000014146	-	72	52.696	Notamacropus_eugenii
WBGene00004880	smg-2	77	54.513	ENSOPRG00000014018	UPF1	79	54.513	Ochotona_princeps
WBGene00004880	smg-2	99	48.413	ENSODEG00000012426	UPF1	89	51.091	Octodon_degus
WBGene00004880	smg-2	83	54.353	ENSONIG00000010452	upf1	87	51.689	Oreochromis_niloticus
WBGene00004880	smg-2	99	49.262	ENSONIG00000012729	-	97	49.354	Oreochromis_niloticus
WBGene00004880	smg-2	83	52.947	ENSOANG00000004568	UPF1	88	50.895	Ornithorhynchus_anatinus
WBGene00004880	smg-2	99	49.908	ENSORLG00000008453	upf1	81	55.138	Oryzias_latipes
WBGene00004880	smg-2	99	49.863	ENSORLG00020014758	upf1	81	55.077	Oryzias_latipes_hni
WBGene00004880	smg-2	99	49.863	ENSORLG00015010165	upf1	83	53.526	Oryzias_latipes_hsok
WBGene00004880	smg-2	99	49.585	ENSOMEG00000003665	upf1	81	55.122	Oryzias_melastigma
WBGene00004880	smg-2	99	48.029	ENSOGAG00000012866	UPF1	89	50.639	Otolemur_garnettii
WBGene00004880	smg-2	89	50.595	ENSOARG00000010739	UPF1	93	50.146	Ovis_aries
WBGene00004880	smg-2	94	50.145	ENSPPAG00000043884	UPF1	84	53.055	Pan_paniscus
WBGene00004880	smg-2	99	47.649	ENSPPRG00000023470	UPF1	89	50.441	Panthera_pardus
WBGene00004880	smg-2	76	57.178	ENSPTIG00000010159	UPF1	78	57.178	Panthera_tigris_altaica
WBGene00004880	smg-2	99	47.943	ENSPTRG00000010721	UPF1	89	50.540	Pan_troglodytes
WBGene00004880	smg-2	99	47.943	ENSPANG00000008847	UPF1	89	50.540	Papio_anubis
WBGene00004880	smg-2	83	54.900	ENSPKIG00000006069	upf1	86	55.011	Paramormyrops_kingsleyae
WBGene00004880	smg-2	53	59.511	ENSPSIG00000009491	UPF1	74	59.511	Pelodiscus_sinensis
WBGene00004880	smg-2	83	54.596	ENSPMGG00000017327	upf1	81	54.596	Periophthalmus_magnuspinnatus
WBGene00004880	smg-2	99	47.814	ENSPEMG00000001085	Upf1	89	50.391	Peromyscus_maniculatus_bairdii
WBGene00004880	smg-2	84	53.746	ENSPMAG00000001206	upf1	91	50.982	Petromyzon_marinus
WBGene00004880	smg-2	95	48.690	ENSPCIG00000006156	UPF1	89	50.639	Phascolarctos_cinereus
WBGene00004880	smg-2	99	49.493	ENSPLAG00000016232	-	97	49.677	Poecilia_latipinna
WBGene00004880	smg-2	91	51.010	ENSPLAG00000018155	-	89	50.909	Poecilia_latipinna
WBGene00004880	smg-2	99	49.493	ENSPMEG00000016319	-	97	49.677	Poecilia_mexicana
WBGene00004880	smg-2	95	49.526	ENSPMEG00000011443	-	91	50.802	Poecilia_mexicana
WBGene00004880	smg-2	99	49.493	ENSPREG00000011247	-	97	49.677	Poecilia_reticulata
WBGene00004880	smg-2	91	50.851	ENSPREG00000009940	upf1	89	50.851	Poecilia_reticulata
WBGene00004880	smg-2	95	46.168	ENSPPYG00000009752	UPF1	88	48.259	Pongo_abelii
WBGene00004880	smg-2	52	69.492	ENSPCAG00000012962	UPF1	50	69.492	Procavia_capensis
WBGene00004880	smg-2	99	47.857	ENSPCOG00000023813	UPF1	89	50.740	Propithecus_coquereli
WBGene00004880	smg-2	64	52.270	ENSPVAG00000003183	UPF1	64	52.843	Pteropus_vampyrus
WBGene00004880	smg-2	83	54.353	ENSPNYG00000003694	upf1	87	51.689	Pundamilia_nyererei
WBGene00004880	smg-2	99	49.262	ENSPNYG00000016731	-	97	49.354	Pundamilia_nyererei
WBGene00004880	smg-2	83	54.576	ENSPNAG00000025614	upf1	81	54.576	Pygocentrus_nattereri
WBGene00004880	smg-2	99	48.335	ENSRNOG00000020134	Upf1	89	50.988	Rattus_norvegicus
WBGene00004880	smg-2	94	49.080	ENSRBIG00000013894	UPF1	84	54.088	Rhinopithecus_bieti
WBGene00004880	smg-2	94	50.145	ENSRROG00000040935	UPF1	84	54.088	Rhinopithecus_roxellana
WBGene00004880	smg-2	77	48.329	YMR080C	NAM7	86	48.329	Saccharomyces_cerevisiae
WBGene00004880	smg-2	94	50.145	ENSSBOG00000023632	UPF1	84	53.055	Saimiri_boliviensis_boliviensis
WBGene00004880	smg-2	90	50.682	ENSSHAG00000010499	UPF1	85	53.493	Sarcophilus_harrisii
WBGene00004880	smg-2	83	54.586	ENSSFOG00015021095	upf1	80	56.604	Scleropages_formosus
WBGene00004880	smg-2	83	54.153	ENSSMAG00000005055	upf1	86	51.537	Scophthalmus_maximus
WBGene00004880	smg-2	99	49.176	ENSSMAG00000021018	-	97	49.267	Scophthalmus_maximus
WBGene00004880	smg-2	99	49.309	ENSSDUG00000009629	-	97	49.401	Seriola_dumerili
WBGene00004880	smg-2	83	54.353	ENSSDUG00000013320	upf1	80	54.353	Seriola_dumerili
WBGene00004880	smg-2	99	49.309	ENSSLDG00000006878	-	97	49.401	Seriola_lalandi_dorsalis
WBGene00004880	smg-2	83	54.353	ENSSLDG00000020868	upf1	81	54.353	Seriola_lalandi_dorsalis
WBGene00004880	smg-2	95	48.863	ENSSPUG00000010538	UPF1	89	51.091	Sphenodon_punctatus
WBGene00004880	smg-2	99	49.452	ENSSPAG00000011521	-	97	49.726	Stegastes_partitus
WBGene00004880	smg-2	83	52.790	ENSSPAG00000000003	upf1	81	53.013	Stegastes_partitus
WBGene00004880	smg-2	99	48.205	ENSSSCG00000039301	UPF1	87	53.629	Sus_scrofa
WBGene00004880	smg-2	83	48.085	ENSTGUG00000001057	UPF1	99	49.040	Taeniopygia_guttata
WBGene00004880	smg-2	99	49.269	ENSTRUG00000005131	-	81	54.807	Takifugu_rubripes
WBGene00004880	smg-2	99	48.172	ENSTRUG00000000150	upf1	82	54.464	Takifugu_rubripes
WBGene00004880	smg-2	99	45.961	ENSTTRG00000011544	UPF1	89	48.467	Tursiops_truncatus
WBGene00004880	smg-2	99	48.075	ENSUAMG00000007093	UPF1	89	50.940	Ursus_americanus
WBGene00004880	smg-2	95	50.338	ENSUMAG00000006652	UPF1	86	54.846	Ursus_maritimus
WBGene00004880	smg-2	99	48.075	ENSVVUG00000007797	UPF1	89	50.940	Vulpes_vulpes
WBGene00004880	smg-2	75	47.892	ENSXETG00000013602	upf1	76	47.892	Xenopus_tropicalis
WBGene00004880	smg-2	81	55.114	ENSXCOG00000015275	-	81	55.114	Xiphophorus_couchianus
WBGene00004880	smg-2	94	50.986	ENSXCOG00000005764	-	97	51.179	Xiphophorus_couchianus
WBGene00004880	smg-2	81	55.227	ENSXMAG00000001703	-	81	55.227	Xiphophorus_maculatus
WBGene00004880	smg-2	99	49.267	ENSXMAG00000002540	-	97	49.585	Xiphophorus_maculatus