EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004881 (Gene tree)
Gene ID: -
Gene Symbol: smg-3
Alias: -
Full Name: SMG-3%3B Suppressor with Morphological effect on Genitalia
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 10693 bases
Position: chrIV:6362395-6373087
Accession: G5EDT8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y73B6BL	Upf2	PF04050.14	5.5e-18	1	1
Y73B6BL	Upf2	PF04050.14	5.5e-18	1	1
Y73B6BL	Upf2	PF04050.14	5.5e-18	1	1
Y73B6BL	Upf2	PF04050.14	5.5e-18	1	1
Y73B6BL	Upf2	PF04050.14	6.9e-18	1	1
Y73B6BL	Upf2	PF04050.14	6.9e-18	1	1
Y73B6BL	Upf2	PF04050.14	6.9e-18	1	1
Y73B6BL	Upf2	PF04050.14	6.9e-18	1	1
Y73B6BL	MIF4G	PF02854.19	7e-25	1	1
Y73B6BL	MIF4G	PF02854.19	7e-25	1	1
Y73B6BL	MIF4G	PF02854.19	7e-25	1	1
Y73B6BL	MIF4G	PF02854.19	7e-25	1	1
Y73B6BL	MIF4G	PF02854.19	7.2e-25	1	1
Y73B6BL	MIF4G	PF02854.19	7.2e-25	1	1
Y73B6BL	MIF4G	PF02854.19	7.2e-25	1	1
Y73B6BL	MIF4G	PF02854.19	7.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y73B6BL.18a.1	-	3623	NM_068573	Y73B6BL.18a.1	1142 (aa)	NP_500974	G5EDT8
Y73B6BL.18a.2	-	3622	NM_068573	Y73B6BL.18a.2	1142 (aa)	NP_500974	G5EDT8
Y73B6BL.18a.3	-	3628	NM_068573	Y73B6BL.18a.3	1142 (aa)	NP_500974	G5EDT8
Y73B6BL.18a.4	-	3706	NM_068573	Y73B6BL.18a.4	1142 (aa)	NP_500974	G5EDT8
Y73B6BL.18b.4	-	3712	NM_001129355	Y73B6BL.18b.4	1144 (aa)	NP_001122827	C2BR97
Y73B6BL.18b.3	-	3634	NM_001129355	Y73B6BL.18b.3	1144 (aa)	NP_001122827	C2BR97
Y73B6BL.18b.2	-	3628	NM_001129355	Y73B6BL.18b.2	1144 (aa)	NP_001122827	C2BR97
Y73B6BL.18b.1	-	3629	NM_001129355	Y73B6BL.18b.1	1144 (aa)	NP_001122827	C2BR97

Gene Model

Click here to download WBGene00004881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004881's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004881	smg-3	69	30.096	ENSACAG00000009259	UPF2	63	30.207	Anolis_carolinensis
WBGene00004881	smg-3	53	32.000	ENSANAG00000028451	UPF2	74	32.000	Aotus_nancymaae
WBGene00004881	smg-3	69	30.061	ENSCJAG00000020685	UPF2	62	30.184	Callithrix_jacchus
WBGene00004881	smg-3	65	32.418	ENSCCAG00000035991	UPF2	61	33.333	Cebus_capucinus
WBGene00004881	smg-3	69	30.061	ENSCATG00000032679	UPF2	62	30.184	Cercocebus_atys
WBGene00004881	smg-3	69	30.472	ENSCPBG00000027823	UPF2	64	30.351	Chrysemys_picta_bellii
WBGene00004881	smg-3	69	30.351	ENSGAGG00000002700	UPF2	63	30.230	Gopherus_agassizii
WBGene00004881	smg-3	58	36.025	ENSPEMG00000015731	Upf2	73	36.025	Peromyscus_maniculatus_bairdii
WBGene00004881	smg-3	61	30.114	ENSPCAG00000000684	UPF2	56	30.114	Procavia_capensis
WBGene00004881	smg-3	69	30.061	ENSTTRG00000016388	UPF2	63	30.429	Tursiops_truncatus