EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004882 (Gene tree)
Gene ID: -
Gene Symbol: smg-4
Alias: -
Full Name: Suppressor with Morphological effect on Genitalia
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 1809 bases
Position: chrV:9775935-9777743
Accession: Q20445
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F46B6	Smg4_UPF3	PF03467.15	8.1e-38	1	1
F46B6	Smg4_UPF3	PF03467.15	1.1e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F46B6.3b	-	1366	NM_171514	F46B6.3b	368 (aa)	NP_741600	Q8WQF3
F46B6.3a	-	1287	NM_171515	F46B6.3a	329 (aa)	NP_741601	Q20445

Gene Model

Click here to download WBGene00004882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004882's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004882	smg-4	53	30.508	ENSG00000125351	UPF3B	79	31.638	Homo_sapiens
WBGene00004882	smg-4	53	31.844	ENSANAG00000021894	-	79	31.429	Aotus_nancymaae
WBGene00004882	smg-4	50	31.098	ENSBTAG00000035615	UPF3B	62	31.633	Bos_taurus
WBGene00004882	smg-4	51	33.714	ENSCJAG00000019102	UPF3A	50	31.955	Callithrix_jacchus
WBGene00004882	smg-4	53	32.402	ENSCJAG00000004975	UPF3B	79	33.520	Callithrix_jacchus
WBGene00004882	smg-4	50	32.738	ENSCHIG00000018011	-	68	31.944	Capra_hircus
WBGene00004882	smg-4	51	35.795	ENSCPOG00000006824	UPF3A	55	33.721	Cavia_porcellus
WBGene00004882	smg-4	51	33.714	ENSCCAG00000018406	UPF3A	51	32.331	Cebus_capucinus
WBGene00004882	smg-4	53	31.844	ENSCATG00000017506	UPF3B	79	31.429	Cercocebus_atys
WBGene00004882	smg-4	55	32.796	ENSCING00000008396	-	91	32.275	Ciona_intestinalis
WBGene00004882	smg-4	50	31.098	ENSCANG00000029220	UPF3B	60	31.633	Colobus_angolensis_palliatus
WBGene00004882	smg-4	50	31.325	ENSCGRG00001013643	-	53	32.020	Cricetulus_griseus_chok1gshd
WBGene00004882	smg-4	51	31.361	ENSCVAG00000022333	upf3a	50	30.364	Cyprinodon_variegatus
WBGene00004882	smg-4	51	33.333	ENSDNOG00000034391	UPF3A	53	32.946	Dasypus_novemcinctus
WBGene00004882	smg-4	50	34.524	ENSDORG00000006077	Upf3b	52	31.746	Dipodomys_ordii
WBGene00004882	smg-4	51	32.955	ENSEASG00005021884	UPF3A	50	32.707	Equus_asinus_asinus
WBGene00004882	smg-4	51	33.714	ENSFCAG00000014602	UPF3A	50	33.206	Felis_catus
WBGene00004882	smg-4	50	32.164	ENSGAFG00000021170	upf3a	56	30.515	Gambusia_affinis
WBGene00004882	smg-4	50	32.317	ENSGGOG00000023995	UPF3B	56	36.842	Gorilla_gorilla
WBGene00004882	smg-4	51	34.078	ENSHGLG00000001544	UPF3A	56	31.349	Heterocephalus_glaber_female
WBGene00004882	smg-4	51	34.078	ENSHGLG00100013244	UPF3A	56	31.349	Heterocephalus_glaber_male
WBGene00004882	smg-4	51	32.386	ENSLBEG00000021570	upf3a	55	31.008	Labrus_bergylta
WBGene00004882	smg-4	53	31.844	ENSMFAG00000045414	UPF3B	79	31.429	Macaca_fascicularis
WBGene00004882	smg-4	53	31.844	ENSMMUG00000020222	UPF3B	79	31.429	Macaca_mulatta
WBGene00004882	smg-4	53	31.844	ENSMNEG00000039794	UPF3B	79	31.429	Macaca_nemestrina
WBGene00004882	smg-4	53	31.844	ENSMLEG00000010999	UPF3B	79	31.429	Mandrillus_leucophaeus
WBGene00004882	smg-4	51	32.386	ENSMAMG00000018364	upf3a	52	30.769	Mastacembelus_armatus
WBGene00004882	smg-4	50	31.098	ENSMICG00000001743	UPF3B	66	32.407	Microcebus_murinus
WBGene00004882	smg-4	51	33.333	ENSMODG00000003159	UPF3A	56	32.061	Monodelphis_domestica
WBGene00004882	smg-4	71	32.308	ENSNGAG00000019314	Upf3a	55	32.932	Nannospalax_galili
WBGene00004882	smg-4	51	33.333	ENSNLEG00000007563	UPF3A	51	32.955	Nomascus_leucogenys
WBGene00004882	smg-4	50	31.098	ENSNLEG00000014897	UPF3B	58	37.500	Nomascus_leucogenys
WBGene00004882	smg-4	52	31.818	ENSOCUG00000008450	UPF3A	57	30.627	Oryctolagus_cuniculus
WBGene00004882	smg-4	51	33.898	ENSORLG00000010911	upf3a	54	32.210	Oryzias_latipes
WBGene00004882	smg-4	83	30.169	ENSORLG00020014317	upf3a	54	30.682	Oryzias_latipes_hni
WBGene00004882	smg-4	51	33.898	ENSOMEG00000014425	upf3a	53	31.418	Oryzias_melastigma
WBGene00004882	smg-4	50	32.317	ENSPPAG00000040390	UPF3B	56	36.842	Pan_paniscus
WBGene00004882	smg-4	51	33.714	ENSPPRG00000025062	UPF3A	50	33.206	Panthera_pardus
WBGene00004882	smg-4	50	32.317	ENSPTIG00000015264	UPF3B	60	31.633	Panthera_tigris_altaica
WBGene00004882	smg-4	51	34.503	ENSPTRG00000006073	UPF3A	50	33.077	Pan_troglodytes
WBGene00004882	smg-4	50	32.317	ENSPTRG00000022228	UPF3B	56	36.842	Pan_troglodytes
WBGene00004882	smg-4	53	31.844	ENSPANG00000000900	UPF3B	79	31.429	Papio_anubis
WBGene00004882	smg-4	51	32.184	ENSPSIG00000007468	UPF3A	54	31.602	Pelodiscus_sinensis
WBGene00004882	smg-4	54	32.086	ENSPCIG00000019590	-	53	37.500	Phascolarctos_cinereus
WBGene00004882	smg-4	50	31.098	ENSPPYG00000020675	-	57	31.633	Pongo_abelii
WBGene00004882	smg-4	50	32.317	ENSPCOG00000021960	UPF3B	66	32.407	Propithecus_coquereli
WBGene00004882	smg-4	53	31.844	ENSRROG00000041031	UPF3B	79	31.429	Rhinopithecus_roxellana
WBGene00004882	smg-4	51	33.140	ENSSBOG00000019740	UPF3B	77	32.738	Saimiri_boliviensis_boliviensis
WBGene00004882	smg-4	51	32.022	ENSSHAG00000009895	UPF3A	57	31.179	Sarcophilus_harrisii
WBGene00004882	smg-4	51	34.078	ENSSFOG00015021851	upf3a	51	31.513	Scleropages_formosus
WBGene00004882	smg-4	51	33.143	ENSSSCG00000024679	UPF3A	58	33.077	Sus_scrofa
WBGene00004882	smg-4	51	32.184	ENSTGUG00000009493	UPF3A	56	31.602	Taeniopygia_guttata