EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004887 (Gene tree)
Gene ID: -
Gene Symbol: smn-1
Alias: SMN
Full Name: SMN (Human Survival Motor Neuron gene) homolog%3B SMN protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 1056 bases
Position: chrI:9511181-9512236
Accession: G5EFQ8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C41G7	SMN	PF06003.12	3.7e-20	1	2
C41G7	SMN	PF06003.12	3.7e-20	2	2
C41G7	SMN	PF06003.12	4.7e-20	1	2
C41G7	SMN	PF06003.12	4.7e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C41G7.1a	-	689	NM_060124	C41G7.1a	197 (aa)	NP_492525	G5EFQ8
C41G7.1b	-	864	NM_001025863	C41G7.1b	207 (aa)	NP_001021034	G5EC16

Gene Model

Click here to download WBGene00004887's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004887's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004887	smn-1	94	32.432	ENSG00000205571	SMN2	59	59.259	Homo_sapiens
WBGene00004887	smn-1	94	32.432	ENSG00000172062	SMN1	85	33.188	Homo_sapiens
WBGene00004887	smn-1	73	30.864	ENSANAG00000032133	-	85	30.859	Aotus_nancymaae
WBGene00004887	smn-1	94	31.532	ENSCJAG00000016290	-	85	32.751	Callithrix_jacchus
WBGene00004887	smn-1	94	33.333	ENSCCAG00000018127	-	83	34.685	Cebus_capucinus
WBGene00004887	smn-1	94	31.982	ENSCATG00000037002	-	85	32.751	Cercocebus_atys
WBGene00004887	smn-1	82	73.913	ENSCLAG00000000284	-	86	35.745	Chinchilla_lanigera
WBGene00004887	smn-1	94	32.432	ENSCANG00000038242	-	85	33.188	Colobus_angolensis_palliatus
WBGene00004887	smn-1	94	30.317	ENSFCAG00000028292	SMN	87	30.263	Felis_catus
WBGene00004887	smn-1	74	31.138	ENSGGOG00000026704	-	82	31.667	Gorilla_gorilla
WBGene00004887	smn-1	94	33.632	ENSGGOG00000003872	-	90	34.348	Gorilla_gorilla
WBGene00004887	smn-1	94	32.432	ENSMFAG00000031523	SMN1	85	33.188	Macaca_fascicularis
WBGene00004887	smn-1	94	32.432	ENSMMUG00000020214	SMN1	85	33.188	Macaca_mulatta
WBGene00004887	smn-1	94	32.432	ENSMNEG00000035094	-	85	33.188	Macaca_nemestrina
WBGene00004887	smn-1	94	32.432	ENSMLEG00000041902	-	86	33.188	Mandrillus_leucophaeus
WBGene00004887	smn-1	94	32.432	ENSNLEG00000004454	-	85	33.188	Nomascus_leucogenys
WBGene00004887	smn-1	70	34.969	ENSODEG00000015976	-	88	31.818	Octodon_degus
WBGene00004887	smn-1	94	30.263	ENSORLG00020007936	smn1	89	32.340	Oryzias_latipes_hni
WBGene00004887	smn-1	94	32.432	ENSPPAG00000036640	-	85	33.188	Pan_paniscus
WBGene00004887	smn-1	94	30.317	ENSPPRG00000005575	-	87	30.263	Panthera_pardus
WBGene00004887	smn-1	94	30.317	ENSPTIG00000007745	-	87	30.263	Panthera_tigris_altaica
WBGene00004887	smn-1	94	32.432	ENSPTRG00000016955	-	89	31.008	Pan_troglodytes
WBGene00004887	smn-1	94	30.342	ENSPANG00000000253	-	86	32.218	Papio_anubis
WBGene00004887	smn-1	94	32.432	ENSPANG00000013601	-	85	33.188	Papio_anubis
WBGene00004887	smn-1	94	32.057	ENSPPYG00000019189	-	99	33.971	Pongo_abelii
WBGene00004887	smn-1	95	30.418	ENSRNOG00000018067	Smn1	89	30.769	Rattus_norvegicus
WBGene00004887	smn-1	94	32.432	ENSRBIG00000037052	-	85	33.188	Rhinopithecus_bieti
WBGene00004887	smn-1	94	32.432	ENSRROG00000039399	-	85	33.188	Rhinopithecus_roxellana
WBGene00004887	smn-1	94	31.532	ENSSBOG00000011665	-	85	32.751	Saimiri_boliviensis_boliviensis