EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004916 (Gene tree)
Gene ID: -
Gene Symbol: snr-3
Alias: -
Full Name: Probable small nuclear ribonucleoprotein Sm D1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 932 bases
Position: chrII:6488830-6489761
Accession: Q10013
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
T28D9	LSM	PF01423.22	1.7e-19	1	1
T28D9	LSM	PF01423.22	7.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
T28D9.10a	-	625	-	T28D9.10a	126 (aa)	NP_495306	Q10013
T28D9.10b	-	540	-	T28D9.10b	97 (aa)	NP_001317766	M1ZJ32

Gene Model

Click here to download WBGene00004916's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004916's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004916	snr-3	75	31.250	WBGene00001808	gut-2	92	32.222

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004916	snr-3	76	76.042	ENSG00000167088	SNRPD1	66	93.103	Homo_sapiens
WBGene00004916	snr-3	75	73.404	ENSAMEG00000002576	SNRPD1	74	77.907	Ailuropoda_melanoleuca
WBGene00004916	snr-3	71	71.910	ENSACIG00000011263	snrpd1	71	77.215	Amphilophus_citrinellus
WBGene00004916	snr-3	76	73.958	ENSAOCG00000007406	snrpd1	74	78.409	Amphiprion_ocellaris
WBGene00004916	snr-3	76	69.792	ENSAPEG00000014961	snrpd1	71	74.419	Amphiprion_percula
WBGene00004916	snr-3	71	71.910	ENSAPEG00000012539	SNRPD1	71	77.215	Amphiprion_percula
WBGene00004916	snr-3	76	73.958	ENSATEG00000014399	snrpd1	74	78.409	Anabas_testudineus
WBGene00004916	snr-3	73	75.000	ENSAPLG00000012256	SNRPD1	71	79.762	Anas_platyrhynchos
WBGene00004916	snr-3	76	76.042	ENSACAG00000006364	SNRPD1	74	80.682	Anolis_carolinensis
WBGene00004916	snr-3	76	76.042	ENSANAG00000025641	SNRPD1	74	80.682	Aotus_nancymaae
WBGene00004916	snr-3	71	71.910	ENSACLG00000017406	snrpd1	71	77.215	Astatotilapia_calliptera
WBGene00004916	snr-3	82	69.903	ENSAMXG00000004589	snrpd1	74	78.409	Astyanax_mexicanus
WBGene00004916	snr-3	76	76.042	ENSBTAG00000008292	SNRPD1	74	80.682	Bos_taurus
WBGene00004916	snr-3	76	71.875	ENSBTAG00000047266	-	74	76.136	Bos_taurus
WBGene00004916	snr-3	75	71.277	ENSBTAG00000055316	-	74	75.581	Bos_taurus
WBGene00004916	snr-3	76	73.958	ENSBTAG00000012376	-	93	66.935	Bos_taurus
WBGene00004916	snr-3	76	76.042	ENSCJAG00000042955	SNRPD1	74	80.682	Callithrix_jacchus
WBGene00004916	snr-3	76	76.042	ENSCAFG00000018247	SNRPD1	74	80.682	Canis_familiaris
WBGene00004916	snr-3	75	76.596	ENSCAFG00020015914	SNRPD1	69	80.682	Canis_lupus_dingo
WBGene00004916	snr-3	76	72.917	ENSCHIG00000005557	SNRPD1	72	79.070	Capra_hircus
WBGene00004916	snr-3	76	76.042	ENSTSYG00000030028	SNRPD1	74	80.682	Carlito_syrichta
WBGene00004916	snr-3	73	73.913	ENSCAPG00000008103	SNRPD1	72	78.571	Cavia_aperea
WBGene00004916	snr-3	76	76.042	ENSCPOG00000004679	SNRPD1	74	80.682	Cavia_porcellus
WBGene00004916	snr-3	76	71.875	ENSCCAG00000005390	-	74	76.136	Cebus_capucinus
WBGene00004916	snr-3	76	75.000	ENSCCAG00000020611	-	74	79.545	Cebus_capucinus
WBGene00004916	snr-3	76	73.958	ENSCCAG00000016652	-	74	78.409	Cebus_capucinus
WBGene00004916	snr-3	76	76.042	ENSCCAG00000032658	SNRPD1	74	80.682	Cebus_capucinus
WBGene00004916	snr-3	76	76.042	ENSCATG00000039978	SNRPD1	74	80.682	Cercocebus_atys
WBGene00004916	snr-3	76	76.042	ENSCLAG00000008691	SNRPD1	74	80.682	Chinchilla_lanigera
WBGene00004916	snr-3	76	76.042	ENSCSAG00000017654	SNRPD1	74	80.682	Chlorocebus_sabaeus
WBGene00004916	snr-3	76	76.042	ENSCPBG00000023143	SNRPD1	75	80.682	Chrysemys_picta_bellii
WBGene00004916	snr-3	69	77.011	ENSCING00000024100	-	70	77.011	Ciona_intestinalis
WBGene00004916	snr-3	68	77.907	ENSCSAVG00000004578	-	69	77.907	Ciona_savignyi
WBGene00004916	snr-3	76	53.125	ENSCGRG00001009945	-	77	56.818	Cricetulus_griseus_chok1gshd
WBGene00004916	snr-3	76	76.042	ENSCGRG00001021055	-	74	80.682	Cricetulus_griseus_chok1gshd
WBGene00004916	snr-3	76	76.042	ENSCGRG00000000490	-	74	80.682	Cricetulus_griseus_crigri
WBGene00004916	snr-3	76	53.125	ENSCGRG00000006224	-	77	56.818	Cricetulus_griseus_crigri
WBGene00004916	snr-3	75	73.684	ENSCSEG00000018141	snrpd1	72	77.907	Cynoglossus_semilaevis
WBGene00004916	snr-3	76	73.958	ENSCVAG00000000534	snrpd1	74	78.409	Cyprinodon_variegatus
WBGene00004916	snr-3	76	73.958	ENSDARG00000011648	snrpd1	89	76.471	Danio_rerio
WBGene00004916	snr-3	76	76.042	ENSDNOG00000040310	SNRPD1	74	80.682	Dasypus_novemcinctus
WBGene00004916	snr-3	76	76.042	ENSDORG00000008349	Snrpd1	74	80.682	Dipodomys_ordii
WBGene00004916	snr-3	71	76.667	FBgn0261933	SmD1	71	78.409	Drosophila_melanogaster
WBGene00004916	snr-3	80	75.248	ENSEBUG00000003170	snrpd1	87	79.545	Eptatretus_burgeri
WBGene00004916	snr-3	71	74.157	ENSEASG00005002433	SNRPD1	72	79.012	Equus_asinus_asinus
WBGene00004916	snr-3	71	74.157	ENSECAG00000014373	SNRPD1	72	79.012	Equus_caballus
WBGene00004916	snr-3	71	75.281	ENSEEUG00000004987	SNRPD1	93	79.518	Erinaceus_europaeus
WBGene00004916	snr-3	79	72.000	ENSELUG00000000088	snrpd1	74	78.409	Esox_lucius
WBGene00004916	snr-3	76	76.042	ENSFCAG00000012352	SNRPD1	74	80.682	Felis_catus
WBGene00004916	snr-3	71	74.157	ENSFALG00000002646	SNRPD1	72	79.012	Ficedula_albicollis
WBGene00004916	snr-3	76	73.958	ENSGMOG00000015607	snrpd1	74	78.409	Gadus_morhua
WBGene00004916	snr-3	76	76.042	ENSGALG00000041334	SNRPD1	74	80.682	Gallus_gallus
WBGene00004916	snr-3	76	73.958	ENSGAFG00000011171	snrpd1	74	78.409	Gambusia_affinis
WBGene00004916	snr-3	76	73.958	ENSGACG00000005201	SNRPD1	74	78.409	Gasterosteus_aculeatus
WBGene00004916	snr-3	76	76.042	ENSGAGG00000011197	SNRPD1	74	80.682	Gopherus_agassizii
WBGene00004916	snr-3	76	76.042	ENSGGOG00000041053	SNRPD1	74	80.682	Gorilla_gorilla
WBGene00004916	snr-3	95	65.000	ENSGGOG00000026706	-	73	75.000	Gorilla_gorilla
WBGene00004916	snr-3	76	73.958	ENSHBUG00000003236	snrpd1	74	78.409	Haplochromis_burtoni
WBGene00004916	snr-3	76	76.042	ENSHGLG00000007152	SNRPD1	74	80.682	Heterocephalus_glaber_female
WBGene00004916	snr-3	76	76.042	ENSHGLG00100008618	SNRPD1	74	80.682	Heterocephalus_glaber_male
WBGene00004916	snr-3	76	73.958	ENSIPUG00000003576	snrpd1	74	78.409	Ictalurus_punctatus
WBGene00004916	snr-3	76	76.042	ENSSTOG00000000485	SNRPD1	74	80.682	Ictidomys_tridecemlineatus
WBGene00004916	snr-3	76	76.042	ENSJJAG00000017698	Snrpd1	74	80.682	Jaculus_jaculus
WBGene00004916	snr-3	76	73.958	ENSKMAG00000005987	snrpd1	74	78.409	Kryptolebias_marmoratus
WBGene00004916	snr-3	76	73.958	ENSLBEG00000003327	snrpd1	74	78.409	Labrus_bergylta
WBGene00004916	snr-3	76	76.042	ENSLACG00000001955	SNRPD1	74	80.682	Latimeria_chalumnae
WBGene00004916	snr-3	75	74.468	ENSLOCG00000002003	snrpd1	74	79.070	Lepisosteus_oculatus
WBGene00004916	snr-3	75	73.684	ENSLAFG00000005819	SNRPD1	74	78.161	Loxodonta_africana
WBGene00004916	snr-3	76	76.042	ENSMFAG00000042080	SNRPD1	74	80.682	Macaca_fascicularis
WBGene00004916	snr-3	72	74.725	ENSMMUG00000003992	SNRPD1	71	79.518	Macaca_mulatta
WBGene00004916	snr-3	76	76.042	ENSMNEG00000041296	SNRPD1	74	80.682	Macaca_nemestrina
WBGene00004916	snr-3	76	76.042	ENSMLEG00000028659	SNRPD1	74	80.682	Mandrillus_leucophaeus
WBGene00004916	snr-3	76	73.958	ENSMAMG00000012971	snrpd1	74	78.409	Mastacembelus_armatus
WBGene00004916	snr-3	76	73.958	ENSMZEG00005004685	snrpd1	74	78.409	Maylandia_zebra
WBGene00004916	snr-3	73	75.000	ENSMGAG00000011598	SNRPD1	69	79.762	Meleagris_gallopavo
WBGene00004916	snr-3	75	73.684	ENSMAUG00000006829	-	56	77.907	Mesocricetus_auratus
WBGene00004916	snr-3	76	61.458	ENSMAUG00000016467	-	79	64.773	Mesocricetus_auratus
WBGene00004916	snr-3	76	61.458	ENSMAUG00000016502	-	79	64.773	Mesocricetus_auratus
WBGene00004916	snr-3	76	76.042	ENSMICG00000044066	SNRPD1	74	80.682	Microcebus_murinus
WBGene00004916	snr-3	76	76.042	ENSMOCG00000017367	Snrpd1	74	80.682	Microtus_ochrogaster
WBGene00004916	snr-3	76	73.958	ENSMMOG00000019089	snrpd1	74	78.409	Mola_mola
WBGene00004916	snr-3	76	76.042	ENSMODG00000021487	SNRPD1	74	80.682	Monodelphis_domestica
WBGene00004916	snr-3	76	73.958	ENSMALG00000014459	snrpd1	74	78.409	Monopterus_albus
WBGene00004916	snr-3	76	76.042	MGP_CAROLIEiJ_G0021994	Snrpd1	74	80.682	Mus_caroli
WBGene00004916	snr-3	76	76.042	ENSMUSG00000002477	Snrpd1	74	80.682	Mus_musculus
WBGene00004916	snr-3	76	76.042	MGP_PahariEiJ_G0018731	Snrpd1	74	80.682	Mus_pahari
WBGene00004916	snr-3	76	76.042	MGP_SPRETEiJ_G0022910	Snrpd1	74	80.682	Mus_spretus
WBGene00004916	snr-3	75	73.404	ENSMPUG00000005567	-	74	77.907	Mustela_putorius_furo
WBGene00004916	snr-3	76	75.000	ENSMPUG00000020041	-	74	79.545	Mustela_putorius_furo
WBGene00004916	snr-3	75	74.468	ENSMLUG00000009124	SNRPD1	67	79.070	Myotis_lucifugus
WBGene00004916	snr-3	76	76.042	ENSNGAG00000023946	Snrpd1	74	80.682	Nannospalax_galili
WBGene00004916	snr-3	75	74.737	ENSNBRG00000012119	snrpd1	73	78.409	Neolamprologus_brichardi
WBGene00004916	snr-3	76	73.958	ENSNLEG00000031430	SNRPD1	73	78.409	Nomascus_leucogenys
WBGene00004916	snr-3	76	76.042	ENSODEG00000005764	SNRPD1	74	80.682	Octodon_degus
WBGene00004916	snr-3	76	73.958	ENSONIG00000002486	snrpd1	74	78.409	Oreochromis_niloticus
WBGene00004916	snr-3	71	70.000	ENSOANG00000004638	-	71	73.810	Ornithorhynchus_anatinus
WBGene00004916	snr-3	76	75.000	ENSOCUG00000014399	-	74	79.545	Oryctolagus_cuniculus
WBGene00004916	snr-3	75	73.404	ENSOCUG00000023761	-	74	77.907	Oryctolagus_cuniculus
WBGene00004916	snr-3	71	71.910	ENSORLG00000012516	snrpd1	71	77.215	Oryzias_latipes
WBGene00004916	snr-3	76	73.958	ENSORLG00020005743	snrpd1	74	78.409	Oryzias_latipes_hni
WBGene00004916	snr-3	76	73.958	ENSORLG00015013402	snrpd1	74	78.409	Oryzias_latipes_hsok
WBGene00004916	snr-3	76	73.958	ENSOMEG00000011571	snrpd1	74	78.409	Oryzias_melastigma
WBGene00004916	snr-3	75	73.404	ENSOGAG00000007833	SNRPD1	72	77.907	Otolemur_garnettii
WBGene00004916	snr-3	76	76.042	ENSOARG00000003413	-	66	80.682	Ovis_aries
WBGene00004916	snr-3	76	76.042	ENSPPAG00000042593	SNRPD1	74	80.682	Pan_paniscus
WBGene00004916	snr-3	76	76.042	ENSPPRG00000002399	SNRPD1	74	80.682	Panthera_pardus
WBGene00004916	snr-3	76	52.083	ENSPPRG00000005009	-	66	54.545	Panthera_pardus
WBGene00004916	snr-3	72	74.725	ENSPTIG00000013206	SNRPD1	73	79.518	Panthera_tigris_altaica
WBGene00004916	snr-3	76	71.875	ENSPTRG00000050159	-	75	76.136	Pan_troglodytes
WBGene00004916	snr-3	80	72.277	ENSPTRG00000009909	SNRPD1	74	80.682	Pan_troglodytes
WBGene00004916	snr-3	76	76.042	ENSPANG00000023478	SNRPD1	74	80.682	Papio_anubis
WBGene00004916	snr-3	69	72.414	ENSPKIG00000021610	snrpd1	71	77.215	Paramormyrops_kingsleyae
WBGene00004916	snr-3	76	75.000	ENSPKIG00000003985	SNRPD1	74	79.545	Paramormyrops_kingsleyae
WBGene00004916	snr-3	76	73.958	ENSPMGG00000001862	snrpd1	74	78.409	Periophthalmus_magnuspinnatus
WBGene00004916	snr-3	76	76.042	ENSPEMG00000014773	-	74	80.682	Peromyscus_maniculatus_bairdii
WBGene00004916	snr-3	76	72.449	ENSPMAG00000003938	-	74	75.556	Petromyzon_marinus
WBGene00004916	snr-3	76	76.042	ENSPCIG00000020320	SNRPD1	74	80.682	Phascolarctos_cinereus
WBGene00004916	snr-3	76	73.958	ENSPFOG00000012448	SNRPD1	78	78.409	Poecilia_formosa
WBGene00004916	snr-3	76	73.958	ENSPLAG00000006738	snrpd1	78	78.409	Poecilia_latipinna
WBGene00004916	snr-3	76	73.958	ENSPMEG00000021942	snrpd1	78	78.409	Poecilia_mexicana
WBGene00004916	snr-3	76	73.958	ENSPREG00000007094	snrpd1	74	78.409	Poecilia_reticulata
WBGene00004916	snr-3	76	76.042	ENSPPYG00000025874	SNRPD1	74	80.682	Pongo_abelii
WBGene00004916	snr-3	76	76.042	ENSPCOG00000013327	SNRPD1	74	80.682	Propithecus_coquereli
WBGene00004916	snr-3	76	76.042	ENSPVAG00000005511	SNRPD1	59	80.682	Pteropus_vampyrus
WBGene00004916	snr-3	76	75.000	ENSPNAG00000017824	snrpd1	74	78.409	Pygocentrus_nattereri
WBGene00004916	snr-3	76	76.042	ENSRNOG00000013714	Snrpd1	74	80.682	Rattus_norvegicus
WBGene00004916	snr-3	76	76.042	ENSRBIG00000022996	SNRPD1	74	80.682	Rhinopithecus_bieti
WBGene00004916	snr-3	76	76.042	ENSRROG00000027640	SNRPD1	74	80.682	Rhinopithecus_roxellana
WBGene00004916	snr-3	76	76.042	ENSSBOG00000020998	SNRPD1	74	80.682	Saimiri_boliviensis_boliviensis
WBGene00004916	snr-3	76	76.042	ENSSHAG00000011791	SNRPD1	74	80.682	Sarcophilus_harrisii
WBGene00004916	snr-3	76	72.917	ENSSFOG00015008809	-	74	77.273	Scleropages_formosus
WBGene00004916	snr-3	76	72.917	ENSSFOG00015022253	-	74	77.273	Scleropages_formosus
WBGene00004916	snr-3	76	73.958	ENSSMAG00000008765	snrpd1	72	79.070	Scophthalmus_maximus
WBGene00004916	snr-3	73	71.739	ENSSDUG00000010521	snrpd1	70	75.904	Seriola_dumerili
WBGene00004916	snr-3	76	73.958	ENSSLDG00000011858	snrpd1	74	78.409	Seriola_lalandi_dorsalis
WBGene00004916	snr-3	53	83.582	ENSSARG00000004271	SNRPD1	100	83.582	Sorex_araneus
WBGene00004916	snr-3	76	76.042	ENSSPUG00000002824	SNRPD1	74	80.682	Sphenodon_punctatus
WBGene00004916	snr-3	71	71.910	ENSSPAG00000015229	snrpd1	71	77.215	Stegastes_partitus
WBGene00004916	snr-3	76	76.042	ENSSSCG00000003701	SNRPD1	74	80.682	Sus_scrofa
WBGene00004916	snr-3	73	75.000	ENSTGUG00000005095	SNRPD1	71	79.762	Taeniopygia_guttata
WBGene00004916	snr-3	71	71.910	ENSTRUG00000008977	snrpd1	72	76.543	Takifugu_rubripes
WBGene00004916	snr-3	67	66.154	ENSTNIG00000001224	snrpd1	67	70.000	Tetraodon_nigroviridis
WBGene00004916	snr-3	67	69.231	ENSTBEG00000013776	SNRPD1	65	75.439	Tupaia_belangeri
WBGene00004916	snr-3	73	75.000	ENSTTRG00000002654	SNRPD1	73	79.762	Tursiops_truncatus
WBGene00004916	snr-3	75	76.842	ENSUAMG00000013431	SNRPD1	88	80.682	Ursus_americanus
WBGene00004916	snr-3	76	76.042	ENSUMAG00000019740	SNRPD1	74	80.682	Ursus_maritimus
WBGene00004916	snr-3	76	76.042	ENSVPAG00000010056	SNRPD1	59	80.682	Vicugna_pacos
WBGene00004916	snr-3	71	74.157	ENSVVUG00000004009	SNRPD1	72	79.012	Vulpes_vulpes
WBGene00004916	snr-3	76	76.042	ENSXETG00000027354	snrpd1	74	80.682	Xenopus_tropicalis
WBGene00004916	snr-3	76	73.958	ENSXCOG00000020108	snrpd1	74	78.409	Xiphophorus_couchianus
WBGene00004916	snr-3	76	73.958	ENSXMAG00000003368	snrpd1	74	78.409	Xiphophorus_maculatus