EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
WBGene00004917 (Gene tree)
Gene ID
-
Gene Symbol
snr-4
Alias
-
Full Name
Probable small nuclear ribonucleoprotein Sm D2
Gene Type
protein_coding
Species
Caenorhabditis_elegans
Status
confidence
Strand
Minus strand
Length
1453 bases
Position
chrV:11978518-11979970
Accession
Q18786
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
C52E4LSMPF01423.223.8e-2011
C52E4LSMPF01423.223.8e-2011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
26595419Conserved mRNA binding proteomes in eukaryotic organismsmRBPome & elegans2015 Nov 23Matia-Gonzalez AMDOI: 10.1038/nsmb.3128
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
C52E4.3.2-543-C52E4.3.2118 (aa)NP_506004Q18786
C52E4.3.1-800-C52E4.3.1118 (aa)NP_506004Q18786
Gene Model
Click here to download WBGene00004917's gene model file
Protein-Protein Interaction (PPI)

Clik here to download WBGene00004917's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
WBGene00004917snr-46939.024WBGene00003077lsm-37737.805
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
WBGene00004917snr-49781.579ENSG00000125743SNRPD29683.654Homo_sapiens
WBGene00004917snr-410078.814ENSAPOG00000012310snrpd210078.814Acanthochromis_polyacanthus
WBGene00004917snr-49681.416ENSAMEG00000000818-9383.486Ailuropoda_melanoleuca
WBGene00004917snr-49280.556ENSACIG00000022689snrpd210080.556Amphilophus_citrinellus
WBGene00004917snr-410078.814ENSAOCG00000024413snrpd210078.814Amphiprion_ocellaris
WBGene00004917snr-410078.814ENSAPEG00000021711snrpd210078.814Amphiprion_percula
WBGene00004917snr-49978.632ENSATEG00000000868snrpd29878.632Anabas_testudineus
WBGene00004917snr-49283.486ENSACAG00000016779-9283.486Anolis_carolinensis
WBGene00004917snr-49779.825ENSANAG00000003063-10077.119Aotus_nancymaae
WBGene00004917snr-49976.923ENSANAG00000001612-9578.761Aotus_nancymaae
WBGene00004917snr-49781.579ENSANAG00000017079-9781.579Aotus_nancymaae
WBGene00004917snr-410072.034ENSANAG00000018193-9775.439Aotus_nancymaae
WBGene00004917snr-410078.814ENSACLG00000001746snrpd210078.814Astatotilapia_calliptera
WBGene00004917snr-410078.814ENSAMXG00000033526snrpd210078.814Astyanax_mexicanus
WBGene00004917snr-49781.579ENSBTAG00000012177SNRPD29781.579Bos_taurus
WBGene00004917snr-49779.825ENSCJAG00000044646-9779.825Callithrix_jacchus
WBGene00004917snr-49779.825ENSCJAG00000047157-9779.825Callithrix_jacchus
WBGene00004917snr-49781.579ENSCJAG00000012413-9781.579Callithrix_jacchus
WBGene00004917snr-49779.825ENSCJAG00000041687-9779.825Callithrix_jacchus
WBGene00004917snr-49780.702ENSCJAG00000019291-9780.702Callithrix_jacchus
WBGene00004917snr-410076.271ENSCJAG00000047147-9778.947Callithrix_jacchus
WBGene00004917snr-49781.579ENSCJAG00000044723-9781.579Callithrix_jacchus
WBGene00004917snr-49781.579ENSCAFG00000004403SNRPD29781.579Canis_familiaris
WBGene00004917snr-410069.492ENSCAFG00000000634-9771.930Canis_familiaris
WBGene00004917snr-49083.962ENSCAFG00020003532-9583.962Canis_lupus_dingo
WBGene00004917snr-410069.492ENSCAFG00020002921-9771.930Canis_lupus_dingo
WBGene00004917snr-49283.486ENSCHIG00000015755-9283.486Capra_hircus
WBGene00004917snr-49366.667ENSTSYG00000031156-8771.287Carlito_syrichta
WBGene00004917snr-49781.579ENSTSYG00000011207-9781.579Carlito_syrichta
WBGene00004917snr-49770.175ENSCAPG00000006559-9771.053Cavia_aperea
WBGene00004917snr-49681.416ENSCAPG00000011695-9283.486Cavia_aperea
WBGene00004917snr-49781.579ENSCPOG00000035154-9781.579Cavia_porcellus
WBGene00004917snr-49771.930ENSCPOG00000025735-10069.492Cavia_porcellus
WBGene00004917snr-49781.579ENSCCAG00000035396SNRPD29781.579Cebus_capucinus
WBGene00004917snr-410075.424ENSCCAG00000012011-9778.070Cebus_capucinus
WBGene00004917snr-410059.322ENSCCAG00000020956-9661.404Cebus_capucinus
WBGene00004917snr-49780.702ENSCCAG00000011183-9780.702Cebus_capucinus
WBGene00004917snr-410066.102ENSCCAG00000030191-10066.102Cebus_capucinus
WBGene00004917snr-49775.652ENSCATG00000040410-9980.303Cercocebus_atys
WBGene00004917snr-49780.702ENSCATG00000005272-9780.702Cercocebus_atys
WBGene00004917snr-49779.825ENSCATG00000031591-9779.825Cercocebus_atys
WBGene00004917snr-49766.667ENSCLAG00000001183-9666.667Chinchilla_lanigera
WBGene00004917snr-49781.579ENSCLAG00000000931-9781.579Chinchilla_lanigera
WBGene00004917snr-49369.091ENSCLAG00000017381-9969.091Chinchilla_lanigera
WBGene00004917snr-49781.579ENSCSAG00000003157SNRPD29781.579Chlorocebus_sabaeus
WBGene00004917snr-49781.579ENSCPBG00000007259SNRPD29781.579Chrysemys_picta_bellii
WBGene00004917snr-410077.966ENSCING00000020031-10077.966Ciona_intestinalis
WBGene00004917snr-49579.464ENSCSAVG00000003527-9179.464Ciona_savignyi
WBGene00004917snr-410077.966ENSCANG00000038535-9780.702Colobus_angolensis_palliatus
WBGene00004917snr-48268.367ENSCANG00000035956-9168.367Colobus_angolensis_palliatus
WBGene00004917snr-410067.797ENSCGRG00001003078-9272.477Cricetulus_griseus_chok1gshd
WBGene00004917snr-49675.221ENSCGRG00000011635-9377.982Cricetulus_griseus_crigri
WBGene00004917snr-410078.814ENSCSEG00000002230snrpd210078.814Cynoglossus_semilaevis
WBGene00004917snr-49978.632ENSCVAG00000010204SNRPD29778.632Cyprinodon_variegatus
WBGene00004917snr-410078.814ENSCVAG00000014834snrpd210078.814Cyprinodon_variegatus
WBGene00004917snr-410078.814ENSDARG00000040440snrpd210078.814Danio_rerio
WBGene00004917snr-49283.486ENSDNOG00000002365-8683.486Dasypus_novemcinctus
WBGene00004917snr-49781.579ENSDORG00000001729Snrpd29781.579Dipodomys_ordii
WBGene00004917snr-49782.609FBgn0261789SmD29782.609Drosophila_melanogaster
WBGene00004917snr-49765.789ENSETEG00000002893-9663.158Echinops_telfairi
WBGene00004917snr-49680.531ENSEBUG00000002144snrpd29282.727Eptatretus_burgeri
WBGene00004917snr-49781.579ENSEASG00005014210-9781.579Equus_asinus_asinus
WBGene00004917snr-48765.049ENSEASG00005016910-7763.107Equus_asinus_asinus
WBGene00004917snr-49083.962ENSECAG00000007824SNRPD29283.962Equus_caballus
WBGene00004917snr-49978.632ENSELUG00000020393snrpd26678.632Esox_lucius
WBGene00004917snr-49073.585ENSFCAG00000024879-6973.585Felis_catus
WBGene00004917snr-49781.579ENSFCAG00000022530-9781.579Felis_catus
WBGene00004917snr-49781.579ENSFDAG00000015792SNRPD29781.579Fukomys_damarensis
WBGene00004917snr-410078.814ENSFHEG00000015591snrpd210078.814Fundulus_heteroclitus
WBGene00004917snr-49978.632ENSGMOG00000013857snrpd29978.632Gadus_morhua
WBGene00004917snr-410078.814ENSGAFG00000001246snrpd210078.814Gambusia_affinis
WBGene00004917snr-49977.778ENSGACG00000006697snrpd29977.778Gasterosteus_aculeatus
WBGene00004917snr-47083.133ENSGAGG00000017944SNRPD25483.333Gopherus_agassizii
WBGene00004917snr-49781.579ENSGGOG00000002350SNRPD29781.579Gorilla_gorilla
WBGene00004917snr-410078.814ENSHBUG00000004073snrpd210078.814Haplochromis_burtoni
WBGene00004917snr-49781.579ENSHGLG00000015364SNRPD29781.579Heterocephalus_glaber_female
WBGene00004917snr-49767.544ENSHGLG00000017154-9667.544Heterocephalus_glaber_female
WBGene00004917snr-49781.579ENSHGLG00100015694SNRPD29781.579Heterocephalus_glaber_male
WBGene00004917snr-410074.576ENSHGLG00100020606-6474.576Heterocephalus_glaber_male
WBGene00004917snr-410077.966ENSHCOG00000010973snrpd210077.966Hippocampus_comes
WBGene00004917snr-49781.579ENSIPUG00000001053snrpd29781.579Ictalurus_punctatus
WBGene00004917snr-49781.579ENSSTOG00000024377SNRPD29781.579Ictidomys_tridecemlineatus
WBGene00004917snr-49781.579ENSJJAG00000002622Snrpd29781.579Jaculus_jaculus
WBGene00004917snr-410078.814ENSKMAG00000001539snrpd210078.814Kryptolebias_marmoratus
WBGene00004917snr-410078.814ENSLBEG00000019436snrpd210078.814Labrus_bergylta
WBGene00004917snr-49280.556ENSLACG00000004720SNRPD210080.556Latimeria_chalumnae
WBGene00004917snr-410078.814ENSLOCG00000014824snrpd210078.814Lepisosteus_oculatus
WBGene00004917snr-49283.486ENSLAFG00000004205-9283.486Loxodonta_africana
WBGene00004917snr-49781.579ENSMFAG00000045767-9781.579Macaca_fascicularis
WBGene00004917snr-49780.702ENSMFAG00000020148-9780.702Macaca_fascicularis
WBGene00004917snr-49778.947ENSMFAG00000009957-9778.947Macaca_fascicularis
WBGene00004917snr-49773.276ENSMMUG00000030518-9873.276Macaca_mulatta
WBGene00004917snr-49778.947ENSMMUG00000032525-9778.947Macaca_mulatta
WBGene00004917snr-49780.702ENSMMUG00000032370-9780.702Macaca_mulatta
WBGene00004917snr-49780.702ENSMNEG00000021599-9780.702Macaca_nemestrina
WBGene00004917snr-48474.747ENSMNEG00000039787-8574.747Macaca_nemestrina
WBGene00004917snr-49778.070ENSMNEG00000010649-9778.070Macaca_nemestrina
WBGene00004917snr-49778.947ENSMLEG00000008325-9778.947Mandrillus_leucophaeus
WBGene00004917snr-410078.814ENSMAMG00000013925snrpd210078.814Mastacembelus_armatus
WBGene00004917snr-410078.814ENSMZEG00005013054snrpd210078.814Maylandia_zebra
WBGene00004917snr-49781.579ENSMAUG00000018849Snrpd29781.579Mesocricetus_auratus
WBGene00004917snr-49781.579ENSMICG00000031545SNRPD29781.579Microcebus_murinus
WBGene00004917snr-410073.729ENSMOCG00000017135-10073.729Microtus_ochrogaster
WBGene00004917snr-49781.579ENSMOCG00000017080Snrpd29781.579Microtus_ochrogaster
WBGene00004917snr-410078.814ENSMMOG00000004936snrpd210078.814Mola_mola
WBGene00004917snr-49283.486ENSMODG00000021539-9283.486Monodelphis_domestica
WBGene00004917snr-410078.814ENSMALG00000010608snrpd210078.814Monopterus_albus
WBGene00004917snr-410073.729MGP_CAROLIEiJ_G0018529-9776.316Mus_caroli
WBGene00004917snr-49781.579MGP_CAROLIEiJ_G0029275-9781.579Mus_caroli
WBGene00004917snr-49781.579ENSMUSG00000040824Snrpd29781.579Mus_musculus
WBGene00004917snr-49781.579MGP_PahariEiJ_G0021135-9781.579Mus_pahari
WBGene00004917snr-49771.930MGP_SPRETEiJ_G0019409-9772.807Mus_spretus
WBGene00004917snr-49781.579MGP_SPRETEiJ_G0030359Snrpd29781.579Mus_spretus
WBGene00004917snr-49680.531ENSMPUG00000005733-9083.486Mustela_putorius_furo
WBGene00004917snr-49681.416ENSMLUG00000001306-9383.486Myotis_lucifugus
WBGene00004917snr-49268.807ENSMLUG00000026025-9268.807Myotis_lucifugus
WBGene00004917snr-410075.424ENSMLUG00000025417-9778.070Myotis_lucifugus
WBGene00004917snr-49077.358ENSMLUG00000030461-9177.358Myotis_lucifugus
WBGene00004917snr-49479.279ENSMLUG00000026353-9279.279Myotis_lucifugus
WBGene00004917snr-48971.429ENSNGAG00000013160-6571.000Nannospalax_galili
WBGene00004917snr-49781.579ENSNGAG00000010411-9781.579Nannospalax_galili
WBGene00004917snr-410078.814ENSNBRG00000000805snrpd210078.814Neolamprologus_brichardi
WBGene00004917snr-49781.579ENSNLEG00000002274SNRPD29683.654Nomascus_leucogenys
WBGene00004917snr-49681.416ENSMEUG00000012031-9383.486Notamacropus_eugenii
WBGene00004917snr-49780.702ENSOPRG00000008321-9780.702Ochotona_princeps
WBGene00004917snr-49781.579ENSODEG00000020139-9781.579Octodon_degus
WBGene00004917snr-49282.569ENSODEG00000012799-8982.569Octodon_degus
WBGene00004917snr-45375.806ENSODEG00000008077-8375.806Octodon_degus
WBGene00004917snr-49779.825ENSODEG00000020094-9779.825Octodon_degus
WBGene00004917snr-49780.702ENSODEG00000020096-9780.702Octodon_degus
WBGene00004917snr-49781.579ENSODEG00000008857-9781.579Octodon_degus
WBGene00004917snr-410077.119ENSODEG00000019447-9779.825Octodon_degus
WBGene00004917snr-45678.788ENSODEG00000011751-6278.788Octodon_degus
WBGene00004917snr-410078.814ENSONIG00000005406snrpd210078.814Oreochromis_niloticus
WBGene00004917snr-49283.486ENSOANG00000000813-8983.486Ornithorhynchus_anatinus
WBGene00004917snr-49781.579ENSOCUG00000022402SNRPD29781.579Oryctolagus_cuniculus
WBGene00004917snr-410078.814ENSORLG00000026725snrpd210078.814Oryzias_latipes
WBGene00004917snr-410078.814ENSORLG00020011312snrpd210078.814Oryzias_latipes_hni
WBGene00004917snr-410078.814ENSORLG00015019579snrpd210078.814Oryzias_latipes_hsok
WBGene00004917snr-410078.814ENSOMEG00000012661snrpd210080.556Oryzias_melastigma
WBGene00004917snr-49681.416ENSOGAG00000030128-9383.486Otolemur_garnettii
WBGene00004917snr-49283.486ENSOARG00000010203-9283.486Ovis_aries
WBGene00004917snr-49779.825ENSOARG00000016742-9779.825Ovis_aries
WBGene00004917snr-49781.579ENSPPAG00000038031SNRPD29781.579Pan_paniscus
WBGene00004917snr-49781.579ENSPPRG00000012309SNRPD29781.579Panthera_pardus
WBGene00004917snr-49172.897ENSPPRG00000000040-8769.159Panthera_pardus
WBGene00004917snr-48883.654ENSPTIG00000006666-9683.654Panthera_tigris_altaica
WBGene00004917snr-48251.546ENSPTIG00000000935-6969.697Panthera_tigris_altaica
WBGene00004917snr-49781.579ENSPTRG00000011162SNRPD29781.579Pan_troglodytes
WBGene00004917snr-410078.814ENSPANG00000017743-10078.814Papio_anubis
WBGene00004917snr-49781.579ENSPANG00000008802-9781.579Papio_anubis
WBGene00004917snr-410078.814ENSPKIG00000001110snrpd210078.814Paramormyrops_kingsleyae
WBGene00004917snr-48883.654ENSPSIG00000015823-9683.654Pelodiscus_sinensis
WBGene00004917snr-49977.778ENSPMGG00000016148snrpd210077.778Periophthalmus_magnuspinnatus
WBGene00004917snr-49681.416ENSPEMG00000004117-9283.486Peromyscus_maniculatus_bairdii
WBGene00004917snr-410074.576ENSPEMG00000009398-9777.193Peromyscus_maniculatus_bairdii
WBGene00004917snr-49781.579ENSPCIG00000022986SNRPD29781.579Phascolarctos_cinereus
WBGene00004917snr-410078.814ENSPFOG00000016809snrpd210078.814Poecilia_formosa
WBGene00004917snr-410078.814ENSPLAG00000010725snrpd210078.814Poecilia_latipinna
WBGene00004917snr-410078.814ENSPMEG00000000107snrpd210078.814Poecilia_mexicana
WBGene00004917snr-49580.357ENSPREG00000004078snrpd29780.357Poecilia_reticulata
WBGene00004917snr-49781.579ENSPPYG00000010129SNRPD29781.579Pongo_abelii
WBGene00004917snr-49781.579ENSPCAG00000016818SNRPD29781.579Procavia_capensis
WBGene00004917snr-49781.579ENSPCOG00000001429-9781.579Propithecus_coquereli
WBGene00004917snr-49781.579ENSPCOG00000028811-9781.579Propithecus_coquereli
WBGene00004917snr-49681.416ENSPVAG00000001345-9383.486Pteropus_vampyrus
WBGene00004917snr-410078.814ENSPNYG00000011826snrpd210078.814Pundamilia_nyererei
WBGene00004917snr-410078.814ENSPNAG00000025554snrpd210078.814Pygocentrus_nattereri
WBGene00004917snr-49781.579ENSRNOG00000015844Snrpd29781.579Rattus_norvegicus
WBGene00004917snr-410076.271ENSRNOG00000048758Snrpd2l9778.947Rattus_norvegicus
WBGene00004917snr-49565.179ENSRBIG00000032742-9566.071Rhinopithecus_bieti
WBGene00004917snr-49781.579ENSRBIG00000040969SNRPD29781.579Rhinopithecus_bieti
WBGene00004917snr-49767.544ENSRBIG00000032406-9672.807Rhinopithecus_bieti
WBGene00004917snr-49766.667ENSRROG00000030974-9671.930Rhinopithecus_roxellana
WBGene00004917snr-49781.579ENSRROG00000034764SNRPD29781.579Rhinopithecus_roxellana
WBGene00004917snr-49750.000YLR275WSMD29950.000Saccharomyces_cerevisiae
WBGene00004917snr-49681.416ENSSBOG00000017764-9681.416Saimiri_boliviensis_boliviensis
WBGene00004917snr-49781.579ENSSBOG00000009827-9781.579Saimiri_boliviensis_boliviensis
WBGene00004917snr-49781.579ENSSBOG00000035164-9781.579Saimiri_boliviensis_boliviensis
WBGene00004917snr-49779.825ENSSBOG00000019992-7979.825Saimiri_boliviensis_boliviensis
WBGene00004917snr-49680.531ENSSHAG00000003772-9282.569Sarcophilus_harrisii
WBGene00004917snr-410078.814ENSSFOG00015022535snrpd210080.556Scleropages_formosus
WBGene00004917snr-49781.579ENSSFOG00015016069-9781.579Scleropages_formosus
WBGene00004917snr-410077.966ENSSMAG00000003422snrpd210077.966Scophthalmus_maximus
WBGene00004917snr-410078.814ENSSDUG00000005519snrpd210078.814Seriola_dumerili
WBGene00004917snr-410078.814ENSSLDG00000009397snrpd210078.814Seriola_lalandi_dorsalis
WBGene00004917snr-49681.416ENSSARG00000009167-9383.486Sorex_araneus
WBGene00004917snr-410078.814ENSSPAG00000015767snrpd210078.814Stegastes_partitus
WBGene00004917snr-49781.579ENSSSCG00000033500SNRPD29781.579Sus_scrofa
WBGene00004917snr-47063.218ENSSSCG00000040417-7565.333Sus_scrofa
WBGene00004917snr-410077.966ENSTRUG00000023014snrpd210077.966Takifugu_rubripes
WBGene00004917snr-48582.000ENSTNIG00000011736snrpd29282.000Tetraodon_nigroviridis
WBGene00004917snr-49781.579ENSTBEG00000001752SNRPD29781.579Tupaia_belangeri
WBGene00004917snr-49781.579ENSTTRG00000014299-9781.579Tursiops_truncatus
WBGene00004917snr-46269.863ENSUAMG00000022454-5969.863Ursus_americanus
WBGene00004917snr-49781.579ENSUAMG00000023173SNRPD29781.579Ursus_americanus
WBGene00004917snr-46269.863ENSUMAG00000001547-5969.863Ursus_maritimus
WBGene00004917snr-49781.579ENSUMAG00000023685-9781.579Ursus_maritimus
WBGene00004917snr-49083.962ENSVVUG00000003181-9583.962Vulpes_vulpes
WBGene00004917snr-410071.186ENSVVUG00000016748-9773.684Vulpes_vulpes
WBGene00004917snr-49681.416ENSXETG00000002173snrpd29383.486Xenopus_tropicalis
WBGene00004917snr-49978.632ENSXCOG00000001082snrpd29378.632Xiphophorus_couchianus
WBGene00004917snr-410078.814ENSXMAG00000001018snrpd210078.814Xiphophorus_maculatus

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