EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004918 (Gene tree)
Gene ID: -
Gene Symbol: snr-5
Alias: -
Full Name: Probable small nuclear ribonucleoprotein F
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 508 bases
Position: chrIII:7862070-7862577
Accession: P34659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ZK652	LSM	PF01423.22	5.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ZK652.1	-	351	NM_066307	ZK652.1	85 (aa)	NP_498708	P34659

Gene Model

Click here to download WBGene00004918's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004918's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004918	snr-5	87	47.297	WBGene00003080	lsm-6	94	47.297

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004918	snr-5	85	75.000	ENSG00000139343	SNRPF	90	72.727	Homo_sapiens
WBGene00004918	snr-5	85	73.611	ENSAPOG00000003377	snrpf	60	71.429	Acanthochromis_polyacanthus
WBGene00004918	snr-5	84	66.197	ENSAMEG00000018718	-	88	64.474	Ailuropoda_melanoleuca
WBGene00004918	snr-5	85	75.000	ENSAMEG00000002166	-	91	72.727	Ailuropoda_melanoleuca
WBGene00004918	snr-5	87	71.622	ENSACIG00000013216	snrpf	93	69.620	Amphilophus_citrinellus
WBGene00004918	snr-5	87	71.622	ENSAOCG00000015108	snrpf	93	69.620	Amphiprion_ocellaris
WBGene00004918	snr-5	87	71.622	ENSAPEG00000022022	snrpf	93	69.620	Amphiprion_percula
WBGene00004918	snr-5	85	73.611	ENSATEG00000022625	snrpf	83	71.429	Anabas_testudineus
WBGene00004918	snr-5	85	75.000	ENSACAG00000014073	SNRPF	89	72.727	Anolis_carolinensis
WBGene00004918	snr-5	85	54.167	ENSANAG00000025860	-	88	53.247	Aotus_nancymaae
WBGene00004918	snr-5	84	70.423	ENSANAG00000020297	-	70	68.421	Aotus_nancymaae
WBGene00004918	snr-5	85	75.000	ENSANAG00000032845	SNRPF	90	72.727	Aotus_nancymaae
WBGene00004918	snr-5	87	71.622	ENSACLG00000016066	snrpf	93	69.620	Astatotilapia_calliptera
WBGene00004918	snr-5	85	70.833	ENSAMXG00000007421	snrpf	89	68.831	Astyanax_mexicanus
WBGene00004918	snr-5	88	69.333	ENSBTAG00000050012	-	93	69.333	Bos_taurus
WBGene00004918	snr-5	85	75.000	ENSBTAG00000016271	SNRPF	90	72.727	Bos_taurus
WBGene00004918	snr-5	85	75.000	ENSCJAG00000002705	-	90	72.727	Callithrix_jacchus
WBGene00004918	snr-5	84	70.423	ENSCAFG00000031151	-	92	68.354	Canis_familiaris
WBGene00004918	snr-5	85	75.000	ENSCAFG00000006395	-	69	72.727	Canis_familiaris
WBGene00004918	snr-5	82	74.286	ENSCAFG00020013161	-	74	74.286	Canis_lupus_dingo
WBGene00004918	snr-5	84	70.423	ENSCAFG00020010823	-	92	68.354	Canis_lupus_dingo
WBGene00004918	snr-5	85	66.667	ENSTSYG00000030635	-	89	64.935	Carlito_syrichta
WBGene00004918	snr-5	95	66.667	ENSTSYG00000031636	-	68	66.667	Carlito_syrichta
WBGene00004918	snr-5	85	68.493	ENSTSYG00000036502	-	89	66.667	Carlito_syrichta
WBGene00004918	snr-5	85	75.000	ENSCAPG00000007242	SNRPF	91	72.727	Cavia_aperea
WBGene00004918	snr-5	85	75.000	ENSCPOG00000013898	SNRPF	90	72.727	Cavia_porcellus
WBGene00004918	snr-5	88	66.667	ENSCCAG00000033627	-	59	66.667	Cebus_capucinus
WBGene00004918	snr-5	85	75.000	ENSCCAG00000037378	-	90	72.727	Cebus_capucinus
WBGene00004918	snr-5	81	75.362	ENSCCAG00000017356	-	90	72.727	Cebus_capucinus
WBGene00004918	snr-5	85	75.000	ENSCLAG00000007200	SNRPF	90	72.727	Chinchilla_lanigera
WBGene00004918	snr-5	85	75.000	ENSCSAG00000003602	-	63	72.727	Chlorocebus_sabaeus
WBGene00004918	snr-5	72	73.770	ENSCHOG00000009392	SNRPF	95	73.770	Choloepus_hoffmanni
WBGene00004918	snr-5	85	69.444	ENSCPBG00000006227	-	90	67.532	Chrysemys_picta_bellii
WBGene00004918	snr-5	89	69.737	ENSCPBG00000024287	-	61	69.737	Chrysemys_picta_bellii
WBGene00004918	snr-5	89	64.474	ENSCPBG00000001985	-	90	64.474	Chrysemys_picta_bellii
WBGene00004918	snr-5	88	68.000	ENSCPBG00000026463	-	87	68.000	Chrysemys_picta_bellii
WBGene00004918	snr-5	89	67.949	ENSCSAVG00000007498	-	89	67.949	Ciona_savignyi
WBGene00004918	snr-5	85	75.000	ENSCGRG00001017100	-	90	72.727	Cricetulus_griseus_chok1gshd
WBGene00004918	snr-5	87	70.270	ENSCGRG00001008965	-	61	68.354	Cricetulus_griseus_chok1gshd
WBGene00004918	snr-5	85	75.000	ENSCGRG00000000336	-	90	72.727	Cricetulus_griseus_crigri
WBGene00004918	snr-5	93	68.354	ENSCGRG00000018878	-	99	68.354	Cricetulus_griseus_crigri
WBGene00004918	snr-5	85	73.611	ENSCSEG00000004748	snrpf	90	71.429	Cynoglossus_semilaevis
WBGene00004918	snr-5	85	73.611	ENSCVAG00000000397	snrpf	61	71.429	Cyprinodon_variegatus
WBGene00004918	snr-5	85	71.622	ENSDARG00000105037	snrpf	90	69.620	Danio_rerio
WBGene00004918	snr-5	81	66.667	ENSDNOG00000049373	-	67	63.636	Dasypus_novemcinctus
WBGene00004918	snr-5	85	75.000	ENSDNOG00000048989	-	69	72.727	Dasypus_novemcinctus
WBGene00004918	snr-5	81	63.768	ENSDORG00000025351	-	96	63.768	Dipodomys_ordii
WBGene00004918	snr-5	69	71.186	ENSDORG00000029740	-	78	68.750	Dipodomys_ordii
WBGene00004918	snr-5	96	67.073	FBgn0000426	SmF	93	67.073	Drosophila_melanogaster
WBGene00004918	snr-5	85	75.000	ENSETEG00000001558	-	90	72.727	Echinops_telfairi
WBGene00004918	snr-5	89	64.935	ENSEBUG00000001793	-	83	64.935	Eptatretus_burgeri
WBGene00004918	snr-5	85	75.000	ENSECAG00000019817	SNRPF	63	72.727	Equus_caballus
WBGene00004918	snr-5	85	75.000	ENSEEUG00000013509	SNRPF	91	72.727	Erinaceus_europaeus
WBGene00004918	snr-5	85	73.611	ENSELUG00000003121	RUXF	90	71.429	Esox_lucius
WBGene00004918	snr-5	88	68.750	ENSELUG00000007737	RUXF	89	70.130	Esox_lucius
WBGene00004918	snr-5	85	52.778	ENSFCAG00000021942	-	89	51.948	Felis_catus
WBGene00004918	snr-5	88	57.500	ENSFCAG00000031148	-	71	58.442	Felis_catus
WBGene00004918	snr-5	85	75.000	ENSFCAG00000029966	-	90	72.727	Felis_catus
WBGene00004918	snr-5	85	75.000	ENSFALG00000010799	SNRPF	90	72.727	Ficedula_albicollis
WBGene00004918	snr-5	85	75.000	ENSFDAG00000002831	-	90	72.727	Fukomys_damarensis
WBGene00004918	snr-5	85	73.611	ENSFHEG00000003240	snrpf	68	71.429	Fundulus_heteroclitus
WBGene00004918	snr-5	85	73.611	ENSGMOG00000007741	snrpf	91	71.429	Gadus_morhua
WBGene00004918	snr-5	85	75.000	ENSGALG00000011409	SNRPF	90	72.727	Gallus_gallus
WBGene00004918	snr-5	85	73.611	ENSGAFG00000016187	snrpf	89	71.429	Gambusia_affinis
WBGene00004918	snr-5	85	72.222	ENSGACG00000020055	snrpf	91	70.130	Gasterosteus_aculeatus
WBGene00004918	snr-5	86	68.493	ENSGAGG00000022991	-	86	68.493	Gopherus_agassizii
WBGene00004918	snr-5	64	66.667	ENSGAGG00000011163	-	95	66.667	Gopherus_agassizii
WBGene00004918	snr-5	76	64.615	ENSGAGG00000014132	-	78	64.615	Gopherus_agassizii
WBGene00004918	snr-5	78	68.182	ENSGAGG00000012945	-	69	68.000	Gopherus_agassizii
WBGene00004918	snr-5	85	75.000	ENSGGOG00000001127	-	93	70.886	Gorilla_gorilla
WBGene00004918	snr-5	87	54.430	ENSGGOG00000039936	-	85	55.263	Gorilla_gorilla
WBGene00004918	snr-5	88	53.333	ENSGGOG00000039564	-	90	53.333	Gorilla_gorilla
WBGene00004918	snr-5	85	75.000	ENSHGLG00000009108	SNRPF	90	72.727	Heterocephalus_glaber_female
WBGene00004918	snr-5	85	75.000	ENSHGLG00000021172	-	90	72.727	Heterocephalus_glaber_female
WBGene00004918	snr-5	85	75.000	ENSHGLG00100019596	-	90	72.727	Heterocephalus_glaber_male
WBGene00004918	snr-5	85	75.000	ENSHGLG00100008103	-	91	72.727	Heterocephalus_glaber_male
WBGene00004918	snr-5	73	65.217	ENSHCOG00000018663	snrpf	54	65.217	Hippocampus_comes
WBGene00004918	snr-5	87	71.622	ENSIPUG00000018994	snrpf	93	69.620	Ictalurus_punctatus
WBGene00004918	snr-5	85	75.000	ENSSTOG00000010434	-	90	72.727	Ictidomys_tridecemlineatus
WBGene00004918	snr-5	68	68.966	ENSJJAG00000004828	-	89	68.966	Jaculus_jaculus
WBGene00004918	snr-5	88	57.333	ENSJJAG00000004558	-	89	57.333	Jaculus_jaculus
WBGene00004918	snr-5	85	75.000	ENSJJAG00000011272	-	90	72.727	Jaculus_jaculus
WBGene00004918	snr-5	87	64.935	ENSJJAG00000010502	-	92	64.935	Jaculus_jaculus
WBGene00004918	snr-5	87	71.622	ENSKMAG00000013566	snrpf	92	69.620	Kryptolebias_marmoratus
WBGene00004918	snr-5	85	72.222	ENSLBEG00000008800	snrpf	90	70.130	Labrus_bergylta
WBGene00004918	snr-5	85	75.000	ENSLACG00000002456	-	66	72.727	Latimeria_chalumnae
WBGene00004918	snr-5	85	70.833	ENSLOCG00000015744	snrpf	90	68.831	Lepisosteus_oculatus
WBGene00004918	snr-5	85	75.000	ENSLAFG00000017426	SNRPF	90	72.727	Loxodonta_africana
WBGene00004918	snr-5	87	70.270	ENSMAMG00000016593	snrpf	93	68.354	Mastacembelus_armatus
WBGene00004918	snr-5	87	71.622	ENSMZEG00005014701	snrpf	93	69.620	Maylandia_zebra
WBGene00004918	snr-5	85	75.000	ENSMGAG00000011453	-	69	72.727	Meleagris_gallopavo
WBGene00004918	snr-5	85	70.833	ENSMAUG00000008799	-	90	68.831	Mesocricetus_auratus
WBGene00004918	snr-5	73	74.194	ENSMAUG00000016909	-	91	71.642	Mesocricetus_auratus
WBGene00004918	snr-5	65	70.909	ENSMAUG00000010289	-	72	70.909	Mesocricetus_auratus
WBGene00004918	snr-5	73	74.194	ENSMAUG00000019737	-	91	71.642	Mesocricetus_auratus
WBGene00004918	snr-5	85	68.056	ENSMICG00000030494	-	62	66.234	Microcebus_murinus
WBGene00004918	snr-5	85	75.000	ENSMICG00000012153	-	90	72.727	Microcebus_murinus
WBGene00004918	snr-5	80	63.235	ENSMOCG00000020220	-	94	60.274	Microtus_ochrogaster
WBGene00004918	snr-5	85	68.056	ENSMOCG00000022166	-	91	65.060	Microtus_ochrogaster
WBGene00004918	snr-5	85	75.000	ENSMOCG00000020437	Snrpf	90	72.727	Microtus_ochrogaster
WBGene00004918	snr-5	85	72.222	ENSMMOG00000007127	snrpf	90	70.130	Mola_mola
WBGene00004918	snr-5	85	75.000	ENSMODG00000008091	SNRPF	68	72.727	Monodelphis_domestica
WBGene00004918	snr-5	87	71.622	ENSMALG00000012328	snrpf	93	69.620	Monopterus_albus
WBGene00004918	snr-5	85	75.000	MGP_CAROLIEiJ_G0015735	-	90	72.727	Mus_caroli
WBGene00004918	snr-5	85	75.000	ENSMUSG00000020018	Snrpf	90	72.727	Mus_musculus
WBGene00004918	snr-5	85	75.000	MGP_PahariEiJ_G0031350	Snrpf	90	72.727	Mus_pahari
WBGene00004918	snr-5	85	75.000	MGP_SPRETEiJ_G0016553	Snrpf	90	72.727	Mus_spretus
WBGene00004918	snr-5	85	75.000	ENSMPUG00000007176	-	69	72.727	Mustela_putorius_furo
WBGene00004918	snr-5	85	75.000	ENSMLUG00000026149	-	73	72.727	Myotis_lucifugus
WBGene00004918	snr-5	85	75.000	ENSMLUG00000029201	-	73	72.727	Myotis_lucifugus
WBGene00004918	snr-5	85	75.000	ENSMLUG00000027932	-	73	72.727	Myotis_lucifugus
WBGene00004918	snr-5	93	55.952	ENSMLUG00000026269	-	76	56.790	Myotis_lucifugus
WBGene00004918	snr-5	85	75.000	ENSMLUG00000013577	-	91	72.727	Myotis_lucifugus
WBGene00004918	snr-5	74	66.667	ENSNGAG00000005851	-	74	66.667	Nannospalax_galili
WBGene00004918	snr-5	85	75.000	ENSNGAG00000024292	-	90	72.727	Nannospalax_galili
WBGene00004918	snr-5	85	73.611	ENSNBRG00000011682	snrpf	79	71.429	Neolamprologus_brichardi
WBGene00004918	snr-5	85	54.167	ENSMEUG00000000671	SNRPF	91	53.247	Notamacropus_eugenii
WBGene00004918	snr-5	85	75.000	ENSODEG00000010328	-	93	70.886	Octodon_degus
WBGene00004918	snr-5	85	75.000	ENSOCUG00000010925	SNRPF	68	72.727	Oryctolagus_cuniculus
WBGene00004918	snr-5	85	70.833	ENSORLG00020008216	snrpf	90	68.831	Oryzias_latipes_hni
WBGene00004918	snr-5	85	70.833	ENSORLG00015007418	snrpf	90	68.831	Oryzias_latipes_hsok
WBGene00004918	snr-5	87	70.270	ENSOMEG00000003018	snrpf	93	68.354	Oryzias_melastigma
WBGene00004918	snr-5	85	73.611	ENSOGAG00000030323	-	90	71.429	Otolemur_garnettii
WBGene00004918	snr-5	85	75.000	ENSOARG00000011853	-	67	72.727	Ovis_aries
WBGene00004918	snr-5	87	51.351	ENSPPAG00000037479	-	89	51.351	Pan_paniscus
WBGene00004918	snr-5	87	53.165	ENSPPAG00000037544	-	85	53.947	Pan_paniscus
WBGene00004918	snr-5	91	58.442	ENSPPRG00000007449	-	79	58.442	Panthera_pardus
WBGene00004918	snr-5	85	75.000	ENSPPRG00000005875	-	90	72.727	Panthera_pardus
WBGene00004918	snr-5	85	75.000	ENSPTIG00000007520	SNRPF	90	72.727	Panthera_tigris_altaica
WBGene00004918	snr-5	88	57.500	ENSPTIG00000005117	-	92	58.442	Panthera_tigris_altaica
WBGene00004918	snr-5	88	53.333	ENSPTRG00000047717	-	91	53.333	Pan_troglodytes
WBGene00004918	snr-5	87	53.165	ENSPTRG00000043814	-	85	53.947	Pan_troglodytes
WBGene00004918	snr-5	85	73.611	ENSPKIG00000014784	snrpf	85	71.429	Paramormyrops_kingsleyae
WBGene00004918	snr-5	85	75.000	ENSPSIG00000016462	SNRPF	90	72.727	Pelodiscus_sinensis
WBGene00004918	snr-5	85	72.222	ENSPMGG00000023548	snrpf	90	70.130	Periophthalmus_magnuspinnatus
WBGene00004918	snr-5	85	75.000	ENSPEMG00000023326	Snrpf	90	72.727	Peromyscus_maniculatus_bairdii
WBGene00004918	snr-5	87	71.622	ENSPLAG00000023932	snrpf	93	69.620	Poecilia_latipinna
WBGene00004918	snr-5	87	71.622	ENSPMEG00000003377	snrpf	93	69.620	Poecilia_mexicana
WBGene00004918	snr-5	88	70.667	ENSPREG00000022635	snrpf	92	68.750	Poecilia_reticulata
WBGene00004918	snr-5	85	75.000	ENSPPYG00000004847	-	90	72.727	Pongo_abelii
WBGene00004918	snr-5	85	75.000	ENSPCOG00000023833	-	90	72.727	Propithecus_coquereli
WBGene00004918	snr-5	85	75.000	ENSPVAG00000009036	SNRPF	90	72.727	Pteropus_vampyrus
WBGene00004918	snr-5	87	71.622	ENSPNYG00000021712	snrpf	93	69.620	Pundamilia_nyererei
WBGene00004918	snr-5	87	70.270	ENSPNAG00000019117	snrpf	93	68.354	Pygocentrus_nattereri
WBGene00004918	snr-5	85	75.000	ENSRNOG00000005556	Snrpf	90	72.727	Rattus_norvegicus
WBGene00004918	snr-5	85	72.222	ENSRBIG00000030414	-	90	70.130	Rhinopithecus_bieti
WBGene00004918	snr-5	85	72.222	ENSRROG00000021975	-	90	70.130	Rhinopithecus_roxellana
WBGene00004918	snr-5	87	60.000	YPR182W	SMX3	87	60.000	Saccharomyces_cerevisiae
WBGene00004918	snr-5	85	75.000	ENSSBOG00000012868	-	90	71.429	Saimiri_boliviensis_boliviensis
WBGene00004918	snr-5	85	75.000	ENSSBOG00000036179	-	90	72.727	Saimiri_boliviensis_boliviensis
WBGene00004918	snr-5	85	62.500	ENSSBOG00000032297	-	88	59.740	Saimiri_boliviensis_boliviensis
WBGene00004918	snr-5	84	60.563	ENSSBOG00000027638	-	87	59.211	Saimiri_boliviensis_boliviensis
WBGene00004918	snr-5	85	75.000	ENSSHAG00000012294	SNRPF	69	72.727	Sarcophilus_harrisii
WBGene00004918	snr-5	79	68.657	ENSSFOG00015021523	snrpf	100	68.657	Scleropages_formosus
WBGene00004918	snr-5	85	72.222	ENSSMAG00000005533	snrpf	89	70.130	Scophthalmus_maximus
WBGene00004918	snr-5	73	72.581	ENSSDUG00000016283	snrpf	74	72.581	Seriola_dumerili
WBGene00004918	snr-5	85	73.611	ENSSLDG00000005119	snrpf	90	71.429	Seriola_lalandi_dorsalis
WBGene00004918	snr-5	96	70.732	ENSSLDG00000003885	-	99	70.732	Seriola_lalandi_dorsalis
WBGene00004918	snr-5	87	72.973	ENSSPUG00000014590	-	93	70.886	Sphenodon_punctatus
WBGene00004918	snr-5	91	70.130	ENSSPAG00000003283	snrpf	93	68.293	Stegastes_partitus
WBGene00004918	snr-5	85	75.000	ENSSSCG00000000895	SNRPF	90	72.727	Sus_scrofa
WBGene00004918	snr-5	67	70.175	ENSTRUG00000014956	snrpf	90	67.742	Takifugu_rubripes
WBGene00004918	snr-5	85	72.222	ENSTNIG00000012672	snrpf	90	70.130	Tetraodon_nigroviridis
WBGene00004918	snr-5	85	54.167	ENSTTRG00000006070	SNRPF	90	53.247	Tursiops_truncatus
WBGene00004918	snr-5	85	75.000	ENSUAMG00000008176	-	90	72.727	Ursus_americanus
WBGene00004918	snr-5	89	64.474	ENSUAMG00000001101	-	89	64.474	Ursus_americanus
WBGene00004918	snr-5	84	66.197	ENSUMAG00000006177	-	89	64.474	Ursus_maritimus
WBGene00004918	snr-5	85	75.000	ENSUMAG00000003528	-	90	72.727	Ursus_maritimus
WBGene00004918	snr-5	85	75.000	ENSVPAG00000008712	-	90	72.727	Vicugna_pacos
WBGene00004918	snr-5	88	68.000	ENSVVUG00000023821	-	96	68.000	Vulpes_vulpes
WBGene00004918	snr-5	85	58.108	ENSXETG00000021630	snrpf	91	56.962	Xenopus_tropicalis
WBGene00004918	snr-5	85	73.611	ENSXCOG00000013860	snrpf	89	71.429	Xiphophorus_couchianus
WBGene00004918	snr-5	87	71.622	ENSXMAG00000015448	snrpf	93	69.620	Xiphophorus_maculatus