EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00006497 (Gene tree)
Gene ID: -
Gene Symbol: tag-151
Alias: -
Full Name: Pre-rRNA-processing protein TSR1 homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 3414 bases
Position: chrII:4710277-4713690
Accession: Q19329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F10G7	AARP2CN	PF08142.12	2.8e-19	1	1
F10G7	AARP2CN	PF08142.12	2.8e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F10G7.1.2	-	2535	NM_062439	F10G7.1.2	785 (aa)	NP_494840	Q19329
F10G7.1.1	-	2552	NM_062439	F10G7.1.1	785 (aa)	NP_494840	Q19329

Gene Model

Click here to download WBGene00006497's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00006497's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00006497	tag-151	96	38.645	ENSG00000167721	TSR1	97	38.798	Homo_sapiens
WBGene00006497	tag-151	96	38.710	ENSAMEG00000007599	TSR1	97	38.337	Ailuropoda_melanoleuca
WBGene00006497	tag-151	96	39.497	ENSACIG00000007090	tsr1	96	39.623	Amphilophus_citrinellus
WBGene00006497	tag-151	86	42.157	ENSAPLG00000013422	TSR1	95	42.157	Anas_platyrhynchos
WBGene00006497	tag-151	69	32.253	ENSACAG00000000859	TSR1	91	32.756	Anolis_carolinensis
WBGene00006497	tag-151	96	39.371	ENSANAG00000031071	TSR1	97	38.868	Aotus_nancymaae
WBGene00006497	tag-151	96	39.136	ENSACLG00000007595	tsr1	96	39.088	Astatotilapia_calliptera
WBGene00006497	tag-151	95	40.176	ENSBTAG00000004225	TSR1	97	39.043	Bos_taurus
WBGene00006497	tag-151	96	38.568	ENSCJAG00000012456	TSR1	97	38.365	Callithrix_jacchus
WBGene00006497	tag-151	96	39.824	ENSCAFG00000002106	-	97	39.196	Canis_familiaris
WBGene00006497	tag-151	89	37.550	ENSCAFG00000019273	-	96	42.260	Canis_familiaris
WBGene00006497	tag-151	96	39.576	ENSCAFG00020009728	TSR1	97	39.103	Canis_lupus_dingo
WBGene00006497	tag-151	96	39.526	ENSCHIG00000023935	TSR1	97	38.750	Capra_hircus
WBGene00006497	tag-151	96	39.119	ENSTSYG00000005468	TSR1	97	38.365	Carlito_syrichta
WBGene00006497	tag-151	91	38.008	ENSCPOG00000014833	TSR1	99	38.058	Cavia_porcellus
WBGene00006497	tag-151	91	38.189	ENSCCAG00000028962	TSR1	98	37.813	Cebus_capucinus
WBGene00006497	tag-151	99	38.061	ENSCATG00000044262	TSR1	99	38.303	Cercocebus_atys
WBGene00006497	tag-151	96	39.723	ENSCLAG00000005567	TSR1	97	39.070	Chinchilla_lanigera
WBGene00006497	tag-151	99	37.939	ENSCSAG00000013788	TSR1	99	38.182	Chlorocebus_sabaeus
WBGene00006497	tag-151	95	40.177	ENSCPBG00000020363	TSR1	94	40.426	Chrysemys_picta_bellii
WBGene00006497	tag-151	96	38.184	ENSCING00000020658	-	99	37.781	Ciona_intestinalis
WBGene00006497	tag-151	96	36.555	ENSCSAVG00000001875	-	100	37.000	Ciona_savignyi
WBGene00006497	tag-151	96	38.491	ENSCGRG00001023942	Tsr1	97	39.599	Cricetulus_griseus_chok1gshd
WBGene00006497	tag-151	96	37.197	ENSCGRG00000013015	Tsr1	97	38.331	Cricetulus_griseus_crigri
WBGene00006497	tag-151	96	39.655	ENSCSEG00000013009	tsr1	96	39.066	Cynoglossus_semilaevis
WBGene00006497	tag-151	96	40.617	ENSCVAG00000000506	tsr1	96	40.470	Cyprinodon_variegatus
WBGene00006497	tag-151	96	39.801	ENSDARG00000007744	tsr1	96	39.801	Danio_rerio
WBGene00006497	tag-151	96	39.723	ENSDNOG00000004715	TSR1	96	41.854	Dasypus_novemcinctus
WBGene00006497	tag-151	96	39.950	ENSDORG00000016371	-	97	40.025	Dipodomys_ordii
WBGene00006497	tag-151	95	36.480	ENSDORG00000023234	-	99	34.509	Dipodomys_ordii
WBGene00006497	tag-151	88	54.514	ENSETEG00000017534	TSR1	86	53.952	Echinops_telfairi
WBGene00006497	tag-151	92	40.236	ENSEBUG00000013731	TSR1	95	39.868	Eptatretus_burgeri
WBGene00006497	tag-151	96	39.573	ENSEASG00005009302	TSR1	95	38.239	Equus_asinus_asinus
WBGene00006497	tag-151	96	39.623	ENSECAG00000009114	TSR1	97	38.742	Equus_caballus
WBGene00006497	tag-151	96	39.487	ENSELUG00000020984	tsr1	92	39.312	Esox_lucius
WBGene00006497	tag-151	96	40.353	ENSFCAG00000006313	TSR1	97	39.798	Felis_catus
WBGene00006497	tag-151	96	41.264	ENSFALG00000006532	TSR1	97	41.512	Ficedula_albicollis
WBGene00006497	tag-151	96	39.344	ENSFDAG00000006038	TSR1	97	39.196	Fukomys_damarensis
WBGene00006497	tag-151	96	38.077	ENSGMOG00000010336	tsr1	96	37.905	Gadus_morhua
WBGene00006497	tag-151	96	40.049	ENSGAFG00000012993	tsr1	96	40.295	Gambusia_affinis
WBGene00006497	tag-151	96	39.130	ENSGACG00000010843	tsr1	96	39.255	Gasterosteus_aculeatus
WBGene00006497	tag-151	95	40.458	ENSGAGG00000025619	-	97	40.852	Gopherus_agassizii
WBGene00006497	tag-151	96	38.896	ENSGGOG00000001704	TSR1	97	38.742	Gorilla_gorilla
WBGene00006497	tag-151	96	38.943	ENSHBUG00000017904	tsr1	97	38.371	Haplochromis_burtoni
WBGene00006497	tag-151	89	35.230	ENSHGLG00000015688	-	95	34.424	Heterocephalus_glaber_female
WBGene00006497	tag-151	96	39.196	ENSHGLG00000012806	-	97	38.896	Heterocephalus_glaber_female
WBGene00006497	tag-151	96	39.196	ENSHGLG00100015392	TSR1	97	38.896	Heterocephalus_glaber_male
WBGene00006497	tag-151	96	38.987	ENSHCOG00000001432	tsr1	96	39.494	Hippocampus_comes
WBGene00006497	tag-151	96	38.665	ENSSTOG00000011819	TSR1	97	38.335	Ictidomys_tridecemlineatus
WBGene00006497	tag-151	73	43.914	ENSJJAG00000019505	Tsr1	79	43.399	Jaculus_jaculus
WBGene00006497	tag-151	95	39.875	ENSLACG00000002197	TSR1	96	39.726	Latimeria_chalumnae
WBGene00006497	tag-151	95	36.086	ENSLOCG00000006491	TSR1	95	35.959	Lepisosteus_oculatus
WBGene00006497	tag-151	99	38.061	ENSMFAG00000021330	TSR1	99	38.303	Macaca_fascicularis
WBGene00006497	tag-151	99	38.182	ENSMMUG00000017519	TSR1	99	38.424	Macaca_mulatta
WBGene00006497	tag-151	99	38.257	ENSMNEG00000031382	TSR1	99	38.257	Macaca_nemestrina
WBGene00006497	tag-151	99	37.939	ENSMLEG00000036733	TSR1	99	37.939	Mandrillus_leucophaeus
WBGene00006497	tag-151	96	38.821	ENSMZEG00005007477	tsr1	96	38.650	Maylandia_zebra
WBGene00006497	tag-151	96	41.169	ENSMGAG00000005576	TSR1	97	41.667	Meleagris_gallopavo
WBGene00006497	tag-151	96	39.698	ENSMICG00000012943	TSR1	97	38.742	Microcebus_murinus
WBGene00006497	tag-151	96	39.573	ENSMOCG00000022764	Tsr1	97	39.098	Microtus_ochrogaster
WBGene00006497	tag-151	96	39.136	ENSMMOG00000014280	tsr1	96	39.728	Mola_mola
WBGene00006497	tag-151	96	38.730	ENSMODG00000010658	TSR1	97	38.221	Monodelphis_domestica
WBGene00006497	tag-151	96	39.438	ENSMALG00000011681	tsr1	96	39.657	Monopterus_albus
WBGene00006497	tag-151	96	38.722	MGP_CAROLIEiJ_G0016727	Tsr1	97	39.119	Mus_caroli
WBGene00006497	tag-151	96	39.773	ENSMUSG00000038335	Tsr1	97	39.196	Mus_musculus
WBGene00006497	tag-151	96	40.025	MGP_PahariEiJ_G0017864	Tsr1	97	39.245	Mus_pahari
WBGene00006497	tag-151	96	39.520	MGP_SPRETEiJ_G0017570	Tsr1	97	39.070	Mus_spretus
WBGene00006497	tag-151	77	43.546	ENSMPUG00000013000	TSR1	96	43.653	Mustela_putorius_furo
WBGene00006497	tag-151	96	39.049	ENSMLUG00000003505	TSR1	97	38.770	Myotis_lucifugus
WBGene00006497	tag-151	96	38.556	ENSNBRG00000020728	tsr1	96	38.631	Neolamprologus_brichardi
WBGene00006497	tag-151	96	36.976	ENSNLEG00000017184	TSR1	97	36.595	Nomascus_leucogenys
WBGene00006497	tag-151	96	35.597	ENSMEUG00000015828	TSR1	97	35.723	Notamacropus_eugenii
WBGene00006497	tag-151	96	39.387	ENSONIG00000013131	tsr1	96	39.066	Oreochromis_niloticus
WBGene00006497	tag-151	89	37.720	ENSOANG00000008637	TSR1	97	36.304	Ornithorhynchus_anatinus
WBGene00006497	tag-151	96	38.798	ENSOCUG00000014256	TSR1	97	38.673	Oryctolagus_cuniculus
WBGene00006497	tag-151	96	39.027	ENSOGAG00000004492	TSR1	97	38.778	Otolemur_garnettii
WBGene00006497	tag-151	96	39.326	ENSOARG00000015437	TSR1	95	38.548	Ovis_aries
WBGene00006497	tag-151	96	38.645	ENSPPAG00000036355	TSR1	97	38.798	Pan_paniscus
WBGene00006497	tag-151	96	40.201	ENSPPRG00000015519	-	97	39.798	Panthera_pardus
WBGene00006497	tag-151	96	40.327	ENSPTIG00000010608	TSR1	97	39.924	Panthera_tigris_altaica
WBGene00006497	tag-151	96	38.645	ENSPTRG00000008547	TSR1	97	38.798	Pan_troglodytes
WBGene00006497	tag-151	99	36.606	ENSPANG00000024463	TSR1	99	37.455	Papio_anubis
WBGene00006497	tag-151	96	40.075	ENSPKIG00000013972	tsr1	96	39.898	Paramormyrops_kingsleyae
WBGene00006497	tag-151	80	42.836	ENSPSIG00000018258	TSR1	93	43.263	Pelodiscus_sinensis
WBGene00006497	tag-151	96	39.649	ENSPMGG00000011577	tsr1	96	39.421	Periophthalmus_magnuspinnatus
WBGene00006497	tag-151	96	39.623	ENSPEMG00000018033	Tsr1	97	39.147	Peromyscus_maniculatus_bairdii
WBGene00006497	tag-151	96	39.299	ENSPCIG00000009357	TSR1	95	39.348	Phascolarctos_cinereus
WBGene00006497	tag-151	97	41.026	ENSPFOG00000004483	TSR1	97	40.636	Poecilia_formosa
WBGene00006497	tag-151	97	40.554	ENSPLAG00000022320	tsr1	97	40.994	Poecilia_latipinna
WBGene00006497	tag-151	97	39.952	ENSPMEG00000004577	tsr1	96	40.926	Poecilia_mexicana
WBGene00006497	tag-151	96	39.515	ENSPREG00000010354	tsr1	94	40.317	Poecilia_reticulata
WBGene00006497	tag-151	96	36.228	ENSPPYG00000007792	TSR1	97	36.228	Pongo_abelii
WBGene00006497	tag-151	96	38.917	ENSPCOG00000017928	TSR1	97	38.840	Propithecus_coquereli
WBGene00006497	tag-151	96	39.497	ENSPVAG00000002162	TSR1	97	38.763	Pteropus_vampyrus
WBGene00006497	tag-151	96	39.136	ENSPNYG00000016163	tsr1	96	39.088	Pundamilia_nyererei
WBGene00006497	tag-151	96	38.346	ENSRNOG00000002980	Tsr1	97	38.770	Rattus_norvegicus
WBGene00006497	tag-151	99	38.545	ENSRBIG00000040016	TSR1	99	38.545	Rhinopithecus_bieti
WBGene00006497	tag-151	99	38.424	ENSRROG00000030361	TSR1	99	38.424	Rhinopithecus_roxellana
WBGene00006497	tag-151	96	38.868	ENSSBOG00000020785	TSR1	97	38.413	Saimiri_boliviensis_boliviensis
WBGene00006497	tag-151	96	39.451	ENSSHAG00000011394	TSR1	97	39.825	Sarcophilus_harrisii
WBGene00006497	tag-151	96	40.402	ENSSFOG00015005455	tsr1	96	40.327	Scleropages_formosus
WBGene00006497	tag-151	96	39.438	ENSSMAG00000009504	tsr1	96	39.976	Scophthalmus_maximus
WBGene00006497	tag-151	96	38.611	ENSSLDG00000002031	tsr1	96	39.461	Seriola_lalandi_dorsalis
WBGene00006497	tag-151	88	44.783	ENSSARG00000000759	TSR1	90	44.783	Sorex_araneus
WBGene00006497	tag-151	98	37.815	ENSSPUG00000007042	TSR1	98	38.977	Sphenodon_punctatus
WBGene00006497	tag-151	96	38.875	ENSSPAG00000021951	tsr1	96	39.194	Stegastes_partitus
WBGene00006497	tag-151	96	40.050	ENSSSCG00000038534	TSR1	97	38.945	Sus_scrofa
WBGene00006497	tag-151	86	42.356	ENSTGUG00000005883	TSR1	96	42.877	Taeniopygia_guttata
WBGene00006497	tag-151	96	38.471	ENSTRUG00000004665	tsr1	96	39.506	Takifugu_rubripes
WBGene00006497	tag-151	96	39.497	ENSTNIG00000016196	tsr1	97	39.649	Tetraodon_nigroviridis
WBGene00006497	tag-151	96	40.551	ENSTTRG00000001177	TSR1	97	39.523	Tursiops_truncatus
WBGene00006497	tag-151	96	39.565	ENSUAMG00000025160	TSR1	97	38.981	Ursus_americanus
WBGene00006497	tag-151	93	39.012	ENSUMAG00000009294	TSR1	96	39.170	Ursus_maritimus
WBGene00006497	tag-151	82	34.407	ENSVPAG00000000228	TSR1	99	32.803	Vicugna_pacos
WBGene00006497	tag-151	96	39.824	ENSVVUG00000021767	TSR1	97	39.196	Vulpes_vulpes
WBGene00006497	tag-151	96	35.169	ENSXETG00000023797	tsr1	96	35.037	Xenopus_tropicalis
WBGene00006497	tag-151	96	40.325	ENSXCOG00000009635	tsr1	96	40.150	Xiphophorus_couchianus
WBGene00006497	tag-151	96	40.148	ENSXMAG00000001397	tsr1	93	39.729	Xiphophorus_maculatus