EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00006613 (Gene tree)
Gene ID: -
Gene Symbol: trm-1
Alias: trm1
Full Name: tRNA (guanine(26)-N(2))-dimethyltransferase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 2544 bases
Position: chrV:14183124-14185667
Accession: Q23270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ZC376	TRM	PF02005.16	2.4e-154	1	1
ZC376	Met_10	PF02475.16	9.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ZC376.5	-	1838	NM_074112	ZC376.5	526 (aa)	NP_506513	Q23270

Gene Model

Click here to download WBGene00006613's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00006613's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00006613	trm-1	96	40.296	ENSG00000104907	TRMT1	99	46.465	Homo_sapiens
WBGene00006613	trm-1	94	40.720	ENSAMEG00000012598	TRMT1	77	40.720	Ailuropoda_melanoleuca
WBGene00006613	trm-1	93	32.567	ENSACIG00000018680	trmt1	79	32.567	Amphilophus_citrinellus
WBGene00006613	trm-1	93	41.892	ENSAOCG00000006781	trmt1	77	41.892	Amphiprion_ocellaris
WBGene00006613	trm-1	93	42.085	ENSAPEG00000007712	trmt1	77	42.085	Amphiprion_percula
WBGene00006613	trm-1	93	41.892	ENSATEG00000001872	trmt1	76	41.892	Anabas_testudineus
WBGene00006613	trm-1	94	41.165	ENSACAG00000003825	TRMT1	84	41.165	Anolis_carolinensis
WBGene00006613	trm-1	96	39.630	ENSANAG00000023016	TRMT1	85	39.630	Aotus_nancymaae
WBGene00006613	trm-1	96	39.305	ENSACLG00000010073	trmt1	84	39.305	Astatotilapia_calliptera
WBGene00006613	trm-1	94	41.729	ENSAMXG00000012026	trmt1	78	41.729	Astyanax_mexicanus
WBGene00006613	trm-1	93	40.304	ENSBTAG00000019325	TRMT1	73	40.304	Bos_taurus
WBGene00006613	trm-1	96	39.815	ENSCJAG00000004566	TRMT1	81	39.815	Callithrix_jacchus
WBGene00006613	trm-1	93	41.300	ENSCAFG00000017070	TRMT1	80	41.300	Canis_familiaris
WBGene00006613	trm-1	96	40.665	ENSCAFG00020005397	TRMT1	82	40.665	Canis_lupus_dingo
WBGene00006613	trm-1	93	40.535	ENSCHIG00000013569	TRMT1	77	40.535	Capra_hircus
WBGene00006613	trm-1	88	41.010	ENSTSYG00000003207	TRMT1	74	41.010	Carlito_syrichta
WBGene00006613	trm-1	85	42.291	ENSCAPG00000003355	TRMT1	81	42.291	Cavia_aperea
WBGene00006613	trm-1	96	40.706	ENSCPOG00000011754	TRMT1	80	40.706	Cavia_porcellus
WBGene00006613	trm-1	96	40.074	ENSCCAG00000022263	TRMT1	85	40.074	Cebus_capucinus
WBGene00006613	trm-1	96	40.149	ENSCATG00000039850	TRMT1	80	40.149	Cercocebus_atys
WBGene00006613	trm-1	83	35.991	ENSCATG00000038220	-	83	35.991	Cercocebus_atys
WBGene00006613	trm-1	97	41.133	ENSCLAG00000015295	TRMT1	84	40.590	Chinchilla_lanigera
WBGene00006613	trm-1	88	40.808	ENSCSAG00000006500	TRMT1	92	40.808	Chlorocebus_sabaeus
WBGene00006613	trm-1	93	42.389	ENSCPBG00000023866	TRMT1	77	42.857	Chrysemys_picta_bellii
WBGene00006613	trm-1	94	39.504	ENSCING00000002884	-	92	39.504	Ciona_intestinalis
WBGene00006613	trm-1	94	41.973	ENSCSAVG00000010927	-	96	41.538	Ciona_savignyi
WBGene00006613	trm-1	89	33.466	ENSCANG00000031650	-	76	33.466	Colobus_angolensis_palliatus
WBGene00006613	trm-1	96	30.601	ENSCANG00000040631	TRMT1	79	30.601	Colobus_angolensis_palliatus
WBGene00006613	trm-1	93	41.524	ENSCGRG00001022594	Trmt1	79	41.524	Cricetulus_griseus_chok1gshd
WBGene00006613	trm-1	93	41.524	ENSCGRG00000017732	Trmt1	77	41.524	Cricetulus_griseus_crigri
WBGene00006613	trm-1	93	40.655	ENSCSEG00000001643	trmt1	84	40.655	Cynoglossus_semilaevis
WBGene00006613	trm-1	94	41.366	ENSCVAG00000011886	trmt1	78	41.366	Cyprinodon_variegatus
WBGene00006613	trm-1	93	41.210	ENSDARG00000010978	trmt1	77	41.777	Danio_rerio
WBGene00006613	trm-1	96	39.147	ENSDORG00000014298	Trmt1	80	39.147	Dipodomys_ordii
WBGene00006613	trm-1	94	44.981	FBgn0032430	CG6388	88	44.981	Drosophila_melanogaster
WBGene00006613	trm-1	95	40.990	ENSEBUG00000003449	trmt1	76	40.594	Eptatretus_burgeri
WBGene00006613	trm-1	96	39.665	ENSEASG00005004050	TRMT1	83	39.963	Equus_asinus_asinus
WBGene00006613	trm-1	96	39.665	ENSECAG00000016149	TRMT1	83	39.963	Equus_caballus
WBGene00006613	trm-1	93	40.267	ENSELUG00000021659	trmt1	77	40.267	Esox_lucius
WBGene00006613	trm-1	94	40.832	ENSFCAG00000000483	TRMT1	78	40.832	Felis_catus
WBGene00006613	trm-1	97	40.219	ENSFDAG00000007386	TRMT1	81	40.219	Fukomys_damarensis
WBGene00006613	trm-1	93	40.927	ENSFHEG00000012865	trmt1	85	40.734	Fundulus_heteroclitus
WBGene00006613	trm-1	92	39.535	ENSGMOG00000006564	trmt1	88	39.922	Gadus_morhua
WBGene00006613	trm-1	96	40.410	ENSGAFG00000011862	trmt1	83	40.782	Gambusia_affinis
WBGene00006613	trm-1	93	41.154	ENSGACG00000000227	trmt1	83	41.683	Gasterosteus_aculeatus
WBGene00006613	trm-1	93	42.857	ENSGAGG00000016432	TRMT1	76	42.916	Gopherus_agassizii
WBGene00006613	trm-1	96	40.296	ENSGGOG00000014007	TRMT1	80	40.296	Gorilla_gorilla
WBGene00006613	trm-1	93	39.192	ENSHBUG00000008821	trmt1	85	39.192	Haplochromis_burtoni
WBGene00006613	trm-1	97	39.927	ENSHGLG00000015972	TRMT1	82	39.927	Heterocephalus_glaber_female
WBGene00006613	trm-1	89	40.438	ENSHGLG00100018112	TRMT1	81	40.438	Heterocephalus_glaber_male
WBGene00006613	trm-1	93	39.655	ENSHCOG00000009447	trmt1	79	39.655	Hippocampus_comes
WBGene00006613	trm-1	96	41.091	ENSIPUG00000002899	trmt1	79	40.909	Ictalurus_punctatus
WBGene00006613	trm-1	96	40.631	ENSSTOG00000012531	TRMT1	81	40.631	Ictidomys_tridecemlineatus
WBGene00006613	trm-1	93	40.344	ENSJJAG00000017154	Trmt1	78	40.344	Jaculus_jaculus
WBGene00006613	trm-1	96	40.185	ENSKMAG00000011809	trmt1	86	41.040	Kryptolebias_marmoratus
WBGene00006613	trm-1	93	41.040	ENSLBEG00000012703	trmt1	76	41.040	Labrus_bergylta
WBGene00006613	trm-1	94	37.311	ENSLACG00000014585	TRMT1	85	37.311	Latimeria_chalumnae
WBGene00006613	trm-1	85	43.070	ENSLOCG00000006479	trmt1	82	43.070	Lepisosteus_oculatus
WBGene00006613	trm-1	99	39.711	ENSLAFG00000014072	TRMT1	84	39.711	Loxodonta_africana
WBGene00006613	trm-1	96	40.149	ENSMFAG00000033143	TRMT1	80	40.149	Macaca_fascicularis
WBGene00006613	trm-1	96	39.114	ENSMMUG00000001167	TRMT1	83	39.114	Macaca_mulatta
WBGene00006613	trm-1	91	45.455	ENSMNEG00000037867	TRMT1	80	40.149	Macaca_nemestrina
WBGene00006613	trm-1	96	40.149	ENSMLEG00000016142	TRMT1	80	40.149	Mandrillus_leucophaeus
WBGene00006613	trm-1	94	40.918	ENSMAMG00000004357	trmt1	77	40.918	Mastacembelus_armatus
WBGene00006613	trm-1	97	39.234	ENSMZEG00005014510	trmt1	81	39.234	Maylandia_zebra
WBGene00006613	trm-1	95	39.513	ENSMAUG00000011134	Trmt1	79	39.513	Mesocricetus_auratus
WBGene00006613	trm-1	96	40.959	ENSMICG00000000793	TRMT1	80	40.959	Microcebus_murinus
WBGene00006613	trm-1	94	41.021	ENSMOCG00000015895	Trmt1	78	41.021	Microtus_ochrogaster
WBGene00006613	trm-1	93	39.766	ENSMMOG00000011097	trmt1	83	39.766	Mola_mola
WBGene00006613	trm-1	96	41.541	ENSMODG00000011619	TRMT1	85	41.541	Monodelphis_domestica
WBGene00006613	trm-1	93	41.874	MGP_CAROLIEiJ_G0031304	Trmt1	88	43.290	Mus_caroli
WBGene00006613	trm-1	93	41.683	ENSMUSG00000001909	Trmt1	89	42.918	Mus_musculus
WBGene00006613	trm-1	93	41.683	MGP_SPRETEiJ_G0032422	Trmt1	89	42.918	Mus_spretus
WBGene00006613	trm-1	96	40.481	ENSMPUG00000004210	TRMT1	76	40.481	Mustela_putorius_furo
WBGene00006613	trm-1	94	41.132	ENSMLUG00000012809	TRMT1	77	41.132	Myotis_lucifugus
WBGene00006613	trm-1	95	40.678	ENSNGAG00000022486	Trmt1	79	40.678	Nannospalax_galili
WBGene00006613	trm-1	78	39.510	ENSNBRG00000024376	trmt1	75	39.510	Neolamprologus_brichardi
WBGene00006613	trm-1	68	44.231	ENSNLEG00000013019	-	75	44.231	Nomascus_leucogenys
WBGene00006613	trm-1	96	41.620	ENSMEUG00000013756	TRMT1	89	41.620	Notamacropus_eugenii
WBGene00006613	trm-1	75	53.846	ENSOPRG00000009471	-	61	53.846	Ochotona_princeps
WBGene00006613	trm-1	97	41.133	ENSODEG00000010323	TRMT1	82	41.133	Octodon_degus
WBGene00006613	trm-1	96	40.223	ENSONIG00000000400	trmt1	85	40.223	Oreochromis_niloticus
WBGene00006613	trm-1	85	41.250	ENSOCUG00000021934	TRMT1	89	42.500	Oryctolagus_cuniculus
WBGene00006613	trm-1	96	38.165	ENSORLG00000020074	trmt1	85	38.043	Oryzias_latipes
WBGene00006613	trm-1	93	40.952	ENSORLG00020007561	trmt1	81	40.952	Oryzias_latipes_hni
WBGene00006613	trm-1	93	40.344	ENSORLG00015006547	trmt1	78	40.344	Oryzias_latipes_hsok
WBGene00006613	trm-1	93	40.270	ENSOMEG00000019343	trmt1	78	40.270	Oryzias_melastigma
WBGene00006613	trm-1	96	39.338	ENSOGAG00000025576	TRMT1	83	40.590	Otolemur_garnettii
WBGene00006613	trm-1	74	41.497	ENSOARG00000009397	TRMT1	72	35.551	Ovis_aries
WBGene00006613	trm-1	78	43.182	ENSPPRG00000012117	TRMT1	78	37.452	Panthera_pardus
WBGene00006613	trm-1	66	43.599	ENSPTIG00000008833	TRMT1	71	43.599	Panthera_tigris_altaica
WBGene00006613	trm-1	95	31.538	ENSPTRG00000050421	-	79	31.538	Pan_troglodytes
WBGene00006613	trm-1	96	40.296	ENSPTRG00000010557	TRMT1	80	40.296	Pan_troglodytes
WBGene00006613	trm-1	96	40.149	ENSPANG00000009247	TRMT1	80	40.149	Papio_anubis
WBGene00006613	trm-1	81	36.784	ENSPANG00000034058	-	79	36.784	Papio_anubis
WBGene00006613	trm-1	94	42.389	ENSPKIG00000005309	trmt1	77	42.389	Paramormyrops_kingsleyae
WBGene00006613	trm-1	93	36.381	ENSPSIG00000008762	TRMT1	74	36.381	Pelodiscus_sinensis
WBGene00006613	trm-1	93	41.165	ENSPMGG00000019764	trmt1	82	41.748	Periophthalmus_magnuspinnatus
WBGene00006613	trm-1	93	40.691	ENSPEMG00000016247	Trmt1	77	41.651	Peromyscus_maniculatus_bairdii
WBGene00006613	trm-1	92	39.139	ENSPMAG00000004329	trmt1	80	39.139	Petromyzon_marinus
WBGene00006613	trm-1	96	41.541	ENSPCIG00000019273	TRMT1	81	41.541	Phascolarctos_cinereus
WBGene00006613	trm-1	93	41.006	ENSPFOG00000008527	trmt1	79	41.006	Poecilia_formosa
WBGene00006613	trm-1	94	40.918	ENSPLAG00000018788	trmt1	87	41.199	Poecilia_latipinna
WBGene00006613	trm-1	93	41.006	ENSPMEG00000013120	trmt1	79	41.006	Poecilia_mexicana
WBGene00006613	trm-1	93	40.232	ENSPREG00000000211	trmt1	77	40.619	Poecilia_reticulata
WBGene00006613	trm-1	96	40.296	ENSPPYG00000009622	TRMT1	80	40.296	Pongo_abelii
WBGene00006613	trm-1	97	37.937	ENSPCAG00000003698	TRMT1	82	37.937	Procavia_capensis
WBGene00006613	trm-1	98	38.798	ENSPCOG00000008653	TRMT1	80	40.706	Propithecus_coquereli
WBGene00006613	trm-1	93	41.300	ENSPVAG00000015076	TRMT1	78	41.300	Pteropus_vampyrus
WBGene00006613	trm-1	93	37.572	ENSPNYG00000013960	trmt1	83	37.572	Pundamilia_nyererei
WBGene00006613	trm-1	94	41.584	ENSPNAG00000024859	trmt1	79	41.584	Pygocentrus_nattereri
WBGene00006613	trm-1	95	41.243	ENSRNOG00000002914	Trmt1	82	41.243	Rattus_norvegicus
WBGene00006613	trm-1	96	39.963	ENSRBIG00000038324	TRMT1	80	39.963	Rhinopithecus_bieti
WBGene00006613	trm-1	89	31.737	ENSRBIG00000037505	-	77	31.737	Rhinopithecus_bieti
WBGene00006613	trm-1	89	30.938	ENSRROG00000031847	-	75	30.938	Rhinopithecus_roxellana
WBGene00006613	trm-1	96	40.149	ENSRROG00000028599	TRMT1	80	40.149	Rhinopithecus_roxellana
WBGene00006613	trm-1	94	33.886	YDR120C	-	93	34.191	Saccharomyces_cerevisiae
WBGene00006613	trm-1	96	39.889	ENSSBOG00000028861	TRMT1	85	39.889	Saimiri_boliviensis_boliviensis
WBGene00006613	trm-1	98	40.809	ENSSHAG00000014381	TRMT1	87	40.809	Sarcophilus_harrisii
WBGene00006613	trm-1	93	41.506	ENSSFOG00015004139	trmt1	76	41.426	Scleropages_formosus
WBGene00006613	trm-1	95	40.525	ENSSMAG00000021136	trmt1	78	40.525	Scophthalmus_maximus
WBGene00006613	trm-1	96	39.779	ENSSDUG00000012740	trmt1	80	39.779	Seriola_dumerili
WBGene00006613	trm-1	96	39.779	ENSSLDG00000005971	trmt1	80	39.779	Seriola_lalandi_dorsalis
WBGene00006613	trm-1	93	39.808	ENSSARG00000005138	TRMT1	90	39.808	Sorex_araneus
WBGene00006613	trm-1	94	33.207	ENSSPUG00000001084	TRMT1	88	33.207	Sphenodon_punctatus
WBGene00006613	trm-1	93	40.734	ENSSPAG00000007153	trmt1	84	40.154	Stegastes_partitus
WBGene00006613	trm-1	93	41.346	ENSSSCG00000013744	TRMT1	80	41.346	Sus_scrofa
WBGene00006613	trm-1	93	40.076	ENSTRUG00000010700	trmt1	79	40.535	Takifugu_rubripes
WBGene00006613	trm-1	93	41.847	ENSTNIG00000018808	trmt1	88	41.847	Tetraodon_nigroviridis
WBGene00006613	trm-1	93	39.847	ENSTTRG00000006379	TRMT1	78	39.847	Tursiops_truncatus
WBGene00006613	trm-1	94	41.210	ENSUAMG00000022911	TRMT1	85	40.267	Ursus_americanus
WBGene00006613	trm-1	94	40.530	ENSUMAG00000006027	TRMT1	81	40.530	Ursus_maritimus
WBGene00006613	trm-1	93	41.300	ENSVVUG00000024177	TRMT1	77	41.300	Vulpes_vulpes
WBGene00006613	trm-1	82	43.103	ENSXETG00000033863	TRMT1	91	43.103	Xenopus_tropicalis
WBGene00006613	trm-1	96	40.037	ENSXCOG00000015733	trmt1	82	40.223	Xiphophorus_couchianus
WBGene00006613	trm-1	93	40.426	ENSXMAG00000013823	trmt1	88	40.812	Xiphophorus_maculatus