EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
WBGene00006697 (Gene tree)
Gene ID
-
Gene Symbol
uaf-1
Alias
-
Full Name
Splicing factor U2AF 65 kDa subunit
Gene Type
protein_coding
Species
Caenorhabditis_elegans
Status
confidence
Strand
Minus strand
Length
13763 bases
Position
chrIII:1062793-1076555
Accession
P90978
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
Y92C3BRRM_1PF00076.222.9e-3212
Y92C3BRRM_1PF00076.222.9e-3222
Y92C3BRRM_1PF00076.223.1e-3212
Y92C3BRRM_1PF00076.223.1e-3222
Y92C3BRRM_1PF00076.223.9e-3212
Y92C3BRRM_1PF00076.223.9e-3222
Y92C3BRRM_1PF00076.225.5e-0711
Y92C3BRRM_1PF00076.225.5e-0711
Y92C3BRRM_1PF00076.225.5e-0711
Y92C3BRRM_1PF00076.225.5e-0711
Y92C3BRRM_1PF00076.225.5e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
26595419Conserved mRNA binding proteomes in eukaryotic organismsmRBPome & elegans2015 Nov 23Matia-Gonzalez AMDOI: 10.1038/nsmb.3128
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
Y92C3B.2b.3-1340-Y92C3B.2b.3143 (aa)NP_497326UPI000002B66D
Y92C3B.2b.2-1931-Y92C3B.2b.2143 (aa)NP_497326UPI000002B66D
Y92C3B.2b.1-2014-Y92C3B.2b.1143 (aa)NP_497326UPI000002B66D
Y92C3B.2b.5-681-Y92C3B.2b.5143 (aa)NP_497326UPI000002B66D
Y92C3B.2b.4-754-Y92C3B.2b.4143 (aa)NP_497326UPI000002B66D
Y92C3B.2a-1715NM_001027796Y92C3B.2a496 (aa)NP_001022967P90978
Y92C3B.2c-1649NM_001027798Y92C3B.2c474 (aa)NP_001022969UPI000002B66E
Y92C3B.2d-1640NM_001027799Y92C3B.2d471 (aa)NP_001022970Q8MXS2
Gene Model
Click here to download WBGene00006697's gene model file
Protein-Protein Interaction (PPI)

Clik here to download WBGene00006697's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
WBGene00006697uaf-110056.081ENSG00000063244U2AF29962.745Homo_sapiens
WBGene00006697uaf-110054.795ENSAPOG00000002208-8357.289Acanthochromis_polyacanthus
WBGene00006697uaf-110054.730ENSAPOG00000023155u2af2a9959.627Acanthochromis_polyacanthus
WBGene00006697uaf-17357.065ENSAMEG00000003864U2AF29455.385Ailuropoda_melanoleuca
WBGene00006697uaf-110054.795ENSACIG00000014173-8755.556Amphilophus_citrinellus
WBGene00006697uaf-110054.248ENSACIG00000005749u2af2a9359.000Amphilophus_citrinellus
WBGene00006697uaf-110054.795ENSAOCG00000003595-8357.289Amphiprion_ocellaris
WBGene00006697uaf-110054.730ENSAOCG00000015571u2af2a8859.000Amphiprion_ocellaris
WBGene00006697uaf-110055.172ENSAPEG00000020062-8556.533Amphiprion_percula
WBGene00006697uaf-110054.730ENSAPEG00000009376u2af2a9459.000Amphiprion_percula
WBGene00006697uaf-110054.730ENSATEG00000022332u2af2a8657.816Anabas_testudineus
WBGene00006697uaf-110055.479ENSATEG00000020577-8557.545Anabas_testudineus
WBGene00006697uaf-110054.967ENSACAG00000015489U2AF28459.799Anolis_carolinensis
WBGene00006697uaf-18251.852ENSANAG00000028042U2AF29050.585Aotus_nancymaae
WBGene00006697uaf-110054.730ENSACLG00000022181u2af2a9359.000Astatotilapia_calliptera
WBGene00006697uaf-110054.795ENSACLG00000020793-8357.289Astatotilapia_calliptera
WBGene00006697uaf-110053.020ENSAMXG00000039454u2af2b8858.396Astyanax_mexicanus
WBGene00006697uaf-110053.595ENSAMXG00000033347u2af2a8757.561Astyanax_mexicanus
WBGene00006697uaf-110055.405ENSBTAG00000002830U2AF29156.621Bos_taurus
WBGene00006697uaf-110054.605ENSCJAG00000017128U2AF29156.881Callithrix_jacchus
WBGene00006697uaf-110056.081ENSCAFG00000002551U2AF29157.407Canis_familiaris
WBGene00006697uaf-110054.605ENSCAFG00020015445U2AF29255.023Canis_lupus_dingo
WBGene00006697uaf-110053.896ENSCHIG00000023595U2AF28750.374Capra_hircus
WBGene00006697uaf-110054.605ENSTSYG00000007432U2AF29457.674Carlito_syrichta
WBGene00006697uaf-110054.545ENSCAPG00000008466U2AF29556.849Cavia_aperea
WBGene00006697uaf-110054.605ENSCPOG00000001582U2AF29156.849Cavia_porcellus
WBGene00006697uaf-110054.605ENSCCAG00000023336U2AF29156.881Cebus_capucinus
WBGene00006697uaf-110056.081ENSCATG00000004637U2AF29157.407Cercocebus_atys
WBGene00006697uaf-110056.081ENSCLAG00000000596U2AF29157.407Chinchilla_lanigera
WBGene00006697uaf-110056.081ENSCSAG00000001722U2AF29157.407Chlorocebus_sabaeus
WBGene00006697uaf-110056.081ENSCPBG00000004485U2AF29962.745Chrysemys_picta_bellii
WBGene00006697uaf-110054.110ENSCING00000003455-8258.586Ciona_intestinalis
WBGene00006697uaf-110053.425ENSCSAVG00000006813-8955.314Ciona_savignyi
WBGene00006697uaf-110047.020ENSCANG00000043845-9253.349Colobus_angolensis_palliatus
WBGene00006697uaf-17358.424ENSCANG00000031002-8756.667Colobus_angolensis_palliatus
WBGene00006697uaf-110056.081ENSCGRG00001003185-9157.110Cricetulus_griseus_chok1gshd
WBGene00006697uaf-110054.054ENSCGRG00001007486-8359.231Cricetulus_griseus_chok1gshd
WBGene00006697uaf-110054.054ENSCGRG00000018587-8359.231Cricetulus_griseus_crigri
WBGene00006697uaf-17152.830ENSCGRG00000004524-7958.436Cricetulus_griseus_crigri
WBGene00006697uaf-110054.730ENSCSEG00000018709u2af2a8157.051Cynoglossus_semilaevis
WBGene00006697uaf-17064.000ENSCSEG00000006604-9864.000Cynoglossus_semilaevis
WBGene00006697uaf-110054.545ENSCSEG00000020504-8955.190Cynoglossus_semilaevis
WBGene00006697uaf-110054.054ENSCVAG00000001259u2af2a8758.750Cyprinodon_variegatus
WBGene00006697uaf-110054.110ENSCVAG00000023307-8357.033Cyprinodon_variegatus
WBGene00006697uaf-110051.007ENSDARG00000011740u2af2b9153.604Danio_rerio
WBGene00006697uaf-110053.020ENSDARG00000012505u2af2a8757.457Danio_rerio
WBGene00006697uaf-17358.424ENSDNOG00000047039U2AF28756.667Dasypus_novemcinctus
WBGene00006697uaf-110054.605ENSDORG00000003250U2af29156.881Dipodomys_ordii
WBGene00006697uaf-19747.101FBgn0034834LS28547.545Drosophila_melanogaster
WBGene00006697uaf-110056.849FBgn0005411U2af5010061.667Drosophila_melanogaster
WBGene00006697uaf-110051.049ENSEBUG00000001732U2AF28648.831Eptatretus_burgeri
WBGene00006697uaf-110051.049ENSEBUG00000006012-10051.049Eptatretus_burgeri
WBGene00006697uaf-110052.778ENSEBUG00000010917U2AF28756.633Eptatretus_burgeri
WBGene00006697uaf-110054.605ENSEASG00005020708U2AF28556.912Equus_asinus_asinus
WBGene00006697uaf-110056.081ENSECAG00000010110U2AF28759.799Equus_caballus
WBGene00006697uaf-110053.020ENSELUG00000015850u2af2a8457.711Esox_lucius
WBGene00006697uaf-110054.545ENSELUG00000018459-9452.164Esox_lucius
WBGene00006697uaf-110053.020ENSELUG00000022291u2af2b8758.000Esox_lucius
WBGene00006697uaf-110054.605ENSFCAG00000011504U2AF29156.881Felis_catus
WBGene00006697uaf-110054.545ENSFDAG00000011264U2AF29156.849Fukomys_damarensis
WBGene00006697uaf-110054.054ENSFHEG00000016025u2af2a9353.813Fundulus_heteroclitus
WBGene00006697uaf-110054.795ENSFHEG00000015338-10054.795Fundulus_heteroclitus
WBGene00006697uaf-110053.020ENSGMOG00000004535u2af2a8858.416Gadus_morhua
WBGene00006697uaf-19255.882ENSGALG00000052748U2AF25758.734Gallus_gallus
WBGene00006697uaf-110054.795ENSGAFG00000005628-8557.545Gambusia_affinis
WBGene00006697uaf-110054.054ENSGAFG00000013626u2af2a7758.750Gambusia_affinis
WBGene00006697uaf-110054.730ENSGACG00000010632U2AF28758.897Gasterosteus_aculeatus
WBGene00006697uaf-110055.263ENSGACG00000014500-8357.431Gasterosteus_aculeatus
WBGene00006697uaf-110056.081ENSGAGG00000011849U2AF29962.745Gopherus_agassizii
WBGene00006697uaf-110056.081ENSGGOG00000036399-8662.443Gorilla_gorilla
WBGene00006697uaf-110054.730ENSHBUG00000013935u2af2a9359.000Haplochromis_burtoni
WBGene00006697uaf-110054.795ENSHBUG00000017424-8357.289Haplochromis_burtoni
WBGene00006697uaf-110054.605ENSHGLG00000005889U2AF29156.881Heterocephalus_glaber_female
WBGene00006697uaf-110054.605ENSHGLG00100004757U2AF29556.881Heterocephalus_glaber_male
WBGene00006697uaf-110054.054ENSHCOG00000019367u2af2a8857.457Hippocampus_comes
WBGene00006697uaf-110052.667ENSHCOG00000007327-10052.667Hippocampus_comes
WBGene00006697uaf-110053.425ENSIPUG00000009844-8656.298Ictalurus_punctatus
WBGene00006697uaf-110054.967ENSIPUG00000007717u2af2a8758.168Ictalurus_punctatus
WBGene00006697uaf-110053.691ENSIPUG00000009077u2af28658.396Ictalurus_punctatus
WBGene00006697uaf-110054.605ENSSTOG00000019595U2AF29156.881Ictidomys_tridecemlineatus
WBGene00006697uaf-110055.263ENSJJAG00000017705U2af29157.110Jaculus_jaculus
WBGene00006697uaf-110053.378ENSKMAG00000005960u2af2a9158.500Kryptolebias_marmoratus
WBGene00006697uaf-110054.795ENSKMAG00000006095-10054.795Kryptolebias_marmoratus
WBGene00006697uaf-110054.110ENSLBEG00000005001-8655.528Labrus_bergylta
WBGene00006697uaf-110055.405ENSLBEG00000016162u2af2a8759.250Labrus_bergylta
WBGene00006697uaf-110054.110ENSLBEG00000010685-10054.110Labrus_bergylta
WBGene00006697uaf-110056.081ENSLACG00000001648U2AF29960.929Latimeria_chalumnae
WBGene00006697uaf-110055.263ENSLOCG00000010843-9454.920Lepisosteus_oculatus
WBGene00006697uaf-15162.403ENSLOCG00000008050u2af2b7662.406Lepisosteus_oculatus
WBGene00006697uaf-110056.081ENSLAFG00000018056-9157.176Loxodonta_africana
WBGene00006697uaf-110054.054ENSLAFG00000028496-9153.721Loxodonta_africana
WBGene00006697uaf-110054.605ENSMFAG00000038383U2AF29156.881Macaca_fascicularis
WBGene00006697uaf-110053.947ENSMMUG00000004810U2AF29156.651Macaca_mulatta
WBGene00006697uaf-110056.081ENSMNEG00000042096U2AF29157.407Macaca_nemestrina
WBGene00006697uaf-110056.081ENSMLEG00000032219U2AF28457.407Mandrillus_leucophaeus
WBGene00006697uaf-110054.730ENSMAMG00000019817u2af2a9157.178Mastacembelus_armatus
WBGene00006697uaf-110054.795ENSMAMG00000020158-8357.513Mastacembelus_armatus
WBGene00006697uaf-110054.795ENSMZEG00005023318-8357.289Maylandia_zebra
WBGene00006697uaf-110054.730ENSMZEG00005016563u2af2a8759.000Maylandia_zebra
WBGene00006697uaf-110055.263ENSMAUG00000008180U2af29357.110Mesocricetus_auratus
WBGene00006697uaf-110056.081ENSMICG00000027681U2AF29157.407Microcebus_murinus
WBGene00006697uaf-110055.263ENSMOCG00000013214-9157.110Microtus_ochrogaster
WBGene00006697uaf-19951.370ENSMOCG00000007227-8355.243Microtus_ochrogaster
WBGene00006697uaf-110054.054ENSMOCG00000001018-9960.784Microtus_ochrogaster
WBGene00006697uaf-110054.110ENSMMOG00000000531-8854.745Mola_mola
WBGene00006697uaf-110054.730ENSMMOG00000016600u2af2a9259.045Mola_mola
WBGene00006697uaf-110054.054ENSMALG00000009985u2af2a9356.193Monopterus_albus
WBGene00006697uaf-110054.795ENSMALG00000019795-10054.795Monopterus_albus
WBGene00006697uaf-110056.081MGP_CAROLIEiJ_G0029150U2af29157.407Mus_caroli
WBGene00006697uaf-110056.081ENSMUSG00000030435U2af29962.745Mus_musculus
WBGene00006697uaf-110056.081MGP_PahariEiJ_G0021017U2af29157.407Mus_pahari
WBGene00006697uaf-110056.081MGP_SPRETEiJ_G0030203U2af29157.407Mus_spretus
WBGene00006697uaf-110056.081ENSMPUG00000007135U2AF29157.407Mustela_putorius_furo
WBGene00006697uaf-110055.263ENSMLUG00000011051-9361.778Myotis_lucifugus
WBGene00006697uaf-110055.263ENSNGAG00000020369U2af29157.110Nannospalax_galili
WBGene00006697uaf-110054.730ENSNBRG00000002568u2af2a9359.000Neolamprologus_brichardi
WBGene00006697uaf-110054.795ENSNBRG00000011100-8656.030Neolamprologus_brichardi
WBGene00006697uaf-110056.081ENSNLEG00000010562U2AF29962.745Nomascus_leucogenys
WBGene00006697uaf-110052.941ENSMEUG00000002346U2AF29549.535Notamacropus_eugenii
WBGene00006697uaf-19747.552ENSODEG00000009254-9446.617Octodon_degus
WBGene00006697uaf-110055.263ENSODEG00000012729-9152.752Octodon_degus
WBGene00006697uaf-110054.795ENSONIG00000009682-8357.289Oreochromis_niloticus
WBGene00006697uaf-110054.730ENSONIG00000012793u2af2a8359.747Oreochromis_niloticus
WBGene00006697uaf-110053.378ENSORLG00000011545u2af2a9158.500Oryzias_latipes
WBGene00006697uaf-110053.378ENSORLG00020006941u2af2a9158.500Oryzias_latipes_hni
WBGene00006697uaf-110053.378ENSORLG00015012843u2af2a8558.750Oryzias_latipes_hsok
WBGene00006697uaf-110053.378ENSOMEG00000011386u2af2a9258.500Oryzias_melastigma
WBGene00006697uaf-18842.166ENSOGAG00000034729-7648.235Otolemur_garnettii
WBGene00006697uaf-110054.605ENSOGAG00000007206-9156.881Otolemur_garnettii
WBGene00006697uaf-18753.881ENSOARG00000001091U2AF28455.611Ovis_aries
WBGene00006697uaf-110054.605ENSPPAG00000039782U2AF29156.881Pan_paniscus
WBGene00006697uaf-110054.605ENSPPRG00000013843U2AF29156.881Panthera_pardus
WBGene00006697uaf-17466.038ENSPTIG00000005489U2AF28656.965Panthera_tigris_altaica
WBGene00006697uaf-110056.081ENSPTRG00000011523U2AF29962.745Pan_troglodytes
WBGene00006697uaf-110056.081ENSPANG00000008459U2AF29157.407Papio_anubis
WBGene00006697uaf-110054.483ENSPKIG00000014878-8855.474Paramormyrops_kingsleyae
WBGene00006697uaf-110054.248ENSPKIG00000024346u2af2b9258.809Paramormyrops_kingsleyae
WBGene00006697uaf-110050.943ENSPSIG00000008014U2AF28748.529Pelodiscus_sinensis
WBGene00006697uaf-110054.730ENSPMGG00000022980u2af2a9154.390Periophthalmus_magnuspinnatus
WBGene00006697uaf-110056.081ENSPEMG00000007378U2af29962.745Peromyscus_maniculatus_bairdii
WBGene00006697uaf-110056.081ENSPMAG00000004097u2af2a8659.091Petromyzon_marinus
WBGene00006697uaf-110054.605ENSPCIG00000018013U2AF29156.881Phascolarctos_cinereus
WBGene00006697uaf-110055.479ENSPFOG00000006433-8557.801Poecilia_formosa
WBGene00006697uaf-110054.054ENSPFOG00000010799u2af2a8558.603Poecilia_formosa
WBGene00006697uaf-110054.054ENSPLAG00000014365u2af2a8758.750Poecilia_latipinna
WBGene00006697uaf-110055.479ENSPLAG00000003275-8657.841Poecilia_latipinna
WBGene00006697uaf-110055.479ENSPMEG00000003734-8657.326Poecilia_mexicana
WBGene00006697uaf-110054.054ENSPMEG00000002969u2af2a8758.750Poecilia_mexicana
WBGene00006697uaf-110055.479ENSPREG00000013036-10055.479Poecilia_reticulata
WBGene00006697uaf-110054.054ENSPREG00000008739u2af2a9158.750Poecilia_reticulata
WBGene00006697uaf-17450.435ENSPPYG00000010429-7761.455Pongo_abelii
WBGene00006697uaf-110052.703ENSPCAG00000003709-9653.671Procavia_capensis
WBGene00006697uaf-18247.991ENSPCAG00000014399-8448.775Procavia_capensis
WBGene00006697uaf-110054.605ENSPCOG00000025870U2AF29156.881Propithecus_coquereli
WBGene00006697uaf-110053.947ENSPVAG00000004540U2AF29156.651Pteropus_vampyrus
WBGene00006697uaf-110054.795ENSPNYG00000011605-8357.289Pundamilia_nyererei
WBGene00006697uaf-110054.730ENSPNYG00000001438u2af2a9359.000Pundamilia_nyererei
WBGene00006697uaf-110054.305ENSPNAG00000017620u2af2a8658.458Pygocentrus_nattereri
WBGene00006697uaf-110054.110ENSPNAG00000007182-8357.545Pygocentrus_nattereri
WBGene00006697uaf-110053.691ENSPNAG00000027289u2af2b8857.895Pygocentrus_nattereri
WBGene00006697uaf-110056.081ENSRNOG00000015914U2af29157.407Rattus_norvegicus
WBGene00006697uaf-110054.605ENSRBIG00000041018U2AF29156.651Rhinopithecus_bieti
WBGene00006697uaf-17756.589ENSRROG00000031103-9655.750Rhinopithecus_roxellana
WBGene00006697uaf-110055.405ENSRROG00000031238-9254.233Rhinopithecus_roxellana
WBGene00006697uaf-110056.081ENSSBOG00000023891U2AF29157.407Saimiri_boliviensis_boliviensis
WBGene00006697uaf-15349.359ENSSHAG00000001167U2AF26552.098Sarcophilus_harrisii
WBGene00006697uaf-110053.595ENSSFOG00015019182u2af2b8959.250Scleropages_formosus
WBGene00006697uaf-110054.483ENSSFOG00015003884-9357.436Scleropages_formosus
WBGene00006697uaf-110053.741ENSSMAG00000013779-8356.633Scophthalmus_maximus
WBGene00006697uaf-110053.378ENSSMAG00000012582u2af2a8758.500Scophthalmus_maximus
WBGene00006697uaf-110054.730ENSSDUG00000009457u2af2a8859.000Seriola_dumerili
WBGene00006697uaf-110054.795ENSSDUG00000021434-8255.721Seriola_dumerili
WBGene00006697uaf-110054.730ENSSLDG00000022742u2af2a8759.000Seriola_lalandi_dorsalis
WBGene00006697uaf-110054.795ENSSLDG00000016151-8655.721Seriola_lalandi_dorsalis
WBGene00006697uaf-110056.081ENSSPUG00000010229U2AF28558.809Sphenodon_punctatus
WBGene00006697uaf-110054.795ENSSPAG00000005241-8357.289Stegastes_partitus
WBGene00006697uaf-110054.730ENSSPAG00000022519u2af2a8859.000Stegastes_partitus
WBGene00006697uaf-110056.081ENSSSCG00000034815U2AF29157.407Sus_scrofa
WBGene00006697uaf-110056.849ENSTRUG00000006885-10056.849Takifugu_rubripes
WBGene00006697uaf-110056.643ENSTRUG00000005514u2af2a8959.747Takifugu_rubripes
WBGene00006697uaf-110054.730ENSTNIG00000008106U2AF28459.747Tetraodon_nigroviridis
WBGene00006697uaf-110056.164ENSTNIG00000011257-8657.071Tetraodon_nigroviridis
WBGene00006697uaf-17354.891ENSTBEG00000009104U2AF29657.224Tupaia_belangeri
WBGene00006697uaf-110054.605ENSTTRG00000000987U2AF29156.881Tursiops_truncatus
WBGene00006697uaf-110054.605ENSUAMG00000019883U2AF29556.651Ursus_americanus
WBGene00006697uaf-110056.081ENSUMAG00000024586U2AF29962.745Ursus_maritimus
WBGene00006697uaf-110056.081ENSVVUG00000006956U2AF26357.407Vulpes_vulpes
WBGene00006697uaf-110056.081ENSXETG00000019128u2af28858.477Xenopus_tropicalis
WBGene00006697uaf-110054.054ENSXCOG00000019406u2af2a9158.750Xiphophorus_couchianus
WBGene00006697uaf-110054.054ENSXMAG00000011979u2af2a8758.750Xiphophorus_maculatus
WBGene00006697uaf-110054.795ENSXMAG00000000768-8057.801Xiphophorus_maculatus

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