EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: WBGene00006888 (Gene tree)
Gene ID: -
Gene Symbol: vbh-1
Alias: -
Full Name: Vasa-and Belle-like Helicase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 12042 bases
Position: chrI:3150346-3162387
Accession: Q65XX1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y54E10A	DEAD	PF00270.29	6.3e-47	1	1
Y54E10A	DEAD	PF00270.29	6.3e-47	1	1
Y54E10A	DEAD	PF00270.29	6.3e-47	1	1
Y54E10A	DEAD	PF00270.29	6.3e-47	1	1
Y54E10A	DEAD	PF00270.29	6.3e-47	1	1
Y54E10A	DEAD	PF00270.29	6.7e-47	1	1
Y54E10A	DEAD	PF00270.29	6.7e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y54E10A.9a.1	-	2587	NM_058712	Y54E10A.9a.1	641 (aa)	NP_491113	Q9N3F4
Y54E10A.9a.2	-	2316	NM_058712	Y54E10A.9a.2	641 (aa)	NP_491113	Q9N3F4
Y54E10A.9b.2	-	3290	-	Y54E10A.9b.2	644 (aa)	-	Q95XY1
Y54E10A.9b.3	-	2330	NM_058711	Y54E10A.9b.3	644 (aa)	NP_491112	Q95XY1
Y54E10A.9b.1	-	3310	-	Y54E10A.9b.1	644 (aa)	-	Q95XY1
Y54E10A.9c.2	-	2285	NM_001026622	Y54E10A.9c.2	660 (aa)	NP_001021793	Q65XX1
Y54E10A.9c.1	-	2556	NM_001026622	Y54E10A.9c.1	660 (aa)	NP_001021793	Q65XX1

Gene Model

Click here to download WBGene00006888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00006888's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00006888	vbh-1	54	40.984	WBGene00021938	Y55F3BR.1	53	42.373
WBGene00006888	vbh-1	68	38.581	WBGene00001598	glh-1	58	38.581
WBGene00006888	vbh-1	78	60.437	WBGene00002244	laf-1	76	61.475
WBGene00006888	vbh-1	64	39.036	WBGene00013214	Y54G11A.3	80	39.268
WBGene00006888	vbh-1	63	38.902	WBGene00019245	sacy-1	64	38.942
WBGene00006888	vbh-1	57	32.065	WBGene00001840	hel-1	82	32.065
WBGene00006888	vbh-1	68	30.131	WBGene00022148	ddx-27	51	31.202
WBGene00006888	vbh-1	63	31.159	WBGene00011032	R05D11.4	67	31.296
WBGene00006888	vbh-1	66	31.364	WBGene00019219	H20J04.4	91	30.149
WBGene00006888	vbh-1	71	36.632	WBGene00001600	glh-3	60	38.128
WBGene00006888	vbh-1	66	34.537	WBGene00012059	T26G10.1	75	36.247
WBGene00006888	vbh-1	64	32.603	WBGene00018007	F33D11.10	98	32.603
WBGene00006888	vbh-1	62	38.119	WBGene00018776	F53H1.1	52	38.119
WBGene00006888	vbh-1	61	31.633	WBGene00002083	inf-1	93	31.633
WBGene00006888	vbh-1	56	31.016	WBGene00013983	ZK512.2	61	31.016
WBGene00006888	vbh-1	62	37.767	WBGene00017162	ddx-23	56	37.767
WBGene00006888	vbh-1	62	33.333	WBGene00022029	Y65B4A.6	97	34.058
WBGene00006888	vbh-1	71	40.252	WBGene00010260	ddx-17	86	39.479