EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00006936 (Gene tree)
Gene ID: -
Gene Symbol: glp-4
Alias: -
Full Name: Valine--tRNA ligase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 11464 bases
Position: chrI:13547898-13559361
Accession: Q9U1Q4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y87G2A	tRNA-synt_1g	PF09334.11	1.1e-10	1	1
Y87G2A	tRNA-synt_1g	PF09334.11	1.1e-10	1	1
Y87G2A	Anticodon_1	PF08264.13	2.8e-37	1	1
Y87G2A	Anticodon_1	PF08264.13	2.8e-37	1	1
Y87G2A	tRNA-synt_1	PF00133.22	5.3e-199	1	1
Y87G2A	tRNA-synt_1	PF00133.22	5.3e-199	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y87G2A.5.1	-	3568	NM_060976	Y87G2A.5.1	1050 (aa)	NP_493377	Q9U1Q4
Y87G2A.5.2	-	3744	NM_060976	Y87G2A.5.2	1050 (aa)	NP_493377	Q9U1Q4

Gene Model

Click here to download WBGene00006936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00006936's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00006936	glp-4	77	36.495	WBGene00006935	vars-1	94	33.817

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00006936	glp-4	76	43.243	ENSCING00000008182	-	97	43.243	Ciona_intestinalis
WBGene00006936	glp-4	72	54.128	ENSCING00000009087	-	99	54.128	Ciona_intestinalis
WBGene00006936	glp-4	80	38.976	ENSCSAVG00000000521	-	99	41.863	Ciona_savignyi
WBGene00006936	glp-4	99	54.563	FBgn0027079	ValRS	95	54.626	Drosophila_melanogaster
WBGene00006936	glp-4	94	48.096	YGR094W	-	90	47.925	Saccharomyces_cerevisiae