EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00006964 (Gene tree)
Gene ID: -
Gene Symbol: xrn-2
Alias: -
Full Name: 5'-3' exoribonuclease 2 homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 10251 bases
Position: chrII:14155768-14166018
Accession: Q9U299
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48B6A	XRN_N	PF03159.18	1.4e-98	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48B6A.3	-	3049	NM_064557	Y48B6A.3	975 (aa)	NP_496958	Q9U299

Gene Model

Click here to download WBGene00006964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00006964's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00006964	xrn-2	89	55.090	ENSG00000088930	XRN2	87	55.814	Homo_sapiens
WBGene00006964	xrn-2	98	50.669	ENSAPOG00000009818	xrn2	85	54.152	Acanthochromis_polyacanthus
WBGene00006964	xrn-2	89	55.430	ENSAMEG00000012581	XRN2	87	56.163	Ailuropoda_melanoleuca
WBGene00006964	xrn-2	89	52.268	ENSACIG00000015047	xrn2	96	53.309	Amphilophus_citrinellus
WBGene00006964	xrn-2	88	54.023	ENSAOCG00000023632	xrn2	85	54.386	Amphiprion_ocellaris
WBGene00006964	xrn-2	98	50.974	ENSAPEG00000014871	xrn2	85	54.386	Amphiprion_percula
WBGene00006964	xrn-2	88	54.345	ENSATEG00000001273	xrn2	87	54.215	Anabas_testudineus
WBGene00006964	xrn-2	85	54.350	ENSAPLG00000013869	XRN2	86	54.644	Anas_platyrhynchos
WBGene00006964	xrn-2	99	50.000	ENSACAG00000005565	XRN2	86	53.738	Anolis_carolinensis
WBGene00006964	xrn-2	89	55.430	ENSANAG00000020126	XRN2	87	56.047	Aotus_nancymaae
WBGene00006964	xrn-2	88	53.580	ENSACLG00000010522	xrn2	96	66.667	Astatotilapia_calliptera
WBGene00006964	xrn-2	97	50.615	ENSAMXG00000018301	xrn2	86	54.007	Astyanax_mexicanus
WBGene00006964	xrn-2	88	54.724	ENSBTAG00000011304	XRN2	86	54.895	Bos_taurus
WBGene00006964	xrn-2	89	55.317	ENSCJAG00000005611	XRN2	87	55.930	Callithrix_jacchus
WBGene00006964	xrn-2	89	55.317	ENSCAFG00000005185	XRN2	87	56.047	Canis_familiaris
WBGene00006964	xrn-2	89	55.317	ENSCAFG00020027479	XRN2	87	56.047	Canis_lupus_dingo
WBGene00006964	xrn-2	88	55.287	ENSCHIG00000006921	XRN2	86	55.465	Capra_hircus
WBGene00006964	xrn-2	89	54.545	ENSTSYG00000008315	XRN2	87	55.257	Carlito_syrichta
WBGene00006964	xrn-2	84	46.917	ENSCAPG00000010773	XRN2	83	47.439	Cavia_aperea
WBGene00006964	xrn-2	88	55.838	ENSCPOG00000009407	XRN2	87	55.944	Cavia_porcellus
WBGene00006964	xrn-2	89	55.204	ENSCATG00000040350	XRN2	87	55.930	Cercocebus_atys
WBGene00006964	xrn-2	89	54.989	ENSCLAG00000013419	XRN2	87	55.711	Chinchilla_lanigera
WBGene00006964	xrn-2	89	55.204	ENSCSAG00000011094	XRN2	87	55.930	Chlorocebus_sabaeus
WBGene00006964	xrn-2	60	70.053	ENSCHOG00000013404	XRN2	63	70.053	Choloepus_hoffmanni
WBGene00006964	xrn-2	89	53.785	ENSCPBG00000023533	XRN2	86	55.217	Chrysemys_picta_bellii
WBGene00006964	xrn-2	86	51.512	ENSCING00000022336	-	100	51.628	Ciona_intestinalis
WBGene00006964	xrn-2	85	62.295	ENSCSAVG00000011217	-	95	62.295	Ciona_savignyi
WBGene00006964	xrn-2	89	55.204	ENSCANG00000040240	XRN2	87	55.930	Colobus_angolensis_palliatus
WBGene00006964	xrn-2	88	54.943	ENSCGRG00001010676	Xrn2	88	55.128	Cricetulus_griseus_chok1gshd
WBGene00006964	xrn-2	85	54.245	ENSCGRG00000006378	Xrn2	86	54.426	Cricetulus_griseus_crigri
WBGene00006964	xrn-2	88	51.680	ENSCVAG00000018999	xrn2	98	55.413	Cyprinodon_variegatus
WBGene00006964	xrn-2	89	54.124	ENSDARG00000101900	xrn2	96	56.747	Danio_rerio
WBGene00006964	xrn-2	89	55.090	ENSDNOG00000001895	XRN2	87	55.814	Dasypus_novemcinctus
WBGene00006964	xrn-2	89	54.864	ENSDORG00000005434	Xrn2	86	55.465	Dipodomys_ordii
WBGene00006964	xrn-2	87	51.986	FBgn0031868	Rat1	88	51.809	Drosophila_melanogaster
WBGene00006964	xrn-2	79	63.221	ENSETEG00000001740	XRN2	79	63.221	Echinops_telfairi
WBGene00006964	xrn-2	85	54.181	ENSEBUG00000016136	xrn2	100	54.299	Eptatretus_burgeri
WBGene00006964	xrn-2	88	56.185	ENSEASG00005002484	XRN2	87	56.294	Equus_asinus_asinus
WBGene00006964	xrn-2	88	56.185	ENSECAG00000018988	XRN2	87	55.263	Equus_caballus
WBGene00006964	xrn-2	60	51.104	ENSEEUG00000009265	XRN2	59	51.104	Erinaceus_europaeus
WBGene00006964	xrn-2	96	51.187	ENSELUG00000000552	xrn2	85	54.196	Esox_lucius
WBGene00006964	xrn-2	89	55.090	ENSFCAG00000007970	XRN2	87	55.814	Felis_catus
WBGene00006964	xrn-2	88	54.461	ENSFALG00000004508	XRN2	86	54.877	Ficedula_albicollis
WBGene00006964	xrn-2	89	55.215	ENSFDAG00000016311	XRN2	87	55.944	Fukomys_damarensis
WBGene00006964	xrn-2	55	50.735	ENSFHEG00000013039	xrn2	93	61.983	Fundulus_heteroclitus
WBGene00006964	xrn-2	87	52.526	ENSGMOG00000013436	xrn2	100	52.644	Gadus_morhua
WBGene00006964	xrn-2	88	54.514	ENSGALG00000008372	XRN2	86	54.930	Gallus_gallus
WBGene00006964	xrn-2	89	53.165	ENSGAFG00000014284	xrn2	93	61.111	Gambusia_affinis
WBGene00006964	xrn-2	88	52.619	ENSGACG00000011870	xrn2	96	55.805	Gasterosteus_aculeatus
WBGene00006964	xrn-2	89	54.011	ENSGAGG00000004884	XRN2	86	55.100	Gopherus_agassizii
WBGene00006964	xrn-2	89	55.090	ENSGGOG00000013738	XRN2	87	55.814	Gorilla_gorilla
WBGene00006964	xrn-2	56	53.047	ENSHBUG00000005077	xrn2	96	66.667	Haplochromis_burtoni
WBGene00006964	xrn-2	89	54.989	ENSHGLG00000014831	XRN2	86	55.711	Heterocephalus_glaber_female
WBGene00006964	xrn-2	89	54.989	ENSHGLG00100013130	XRN2	86	55.711	Heterocephalus_glaber_male
WBGene00006964	xrn-2	92	52.360	ENSHCOG00000011994	xrn2	90	52.914	Hippocampus_comes
WBGene00006964	xrn-2	89	55.317	ENSSTOG00000000589	XRN2	87	56.047	Ictidomys_tridecemlineatus
WBGene00006964	xrn-2	89	55.090	ENSJJAG00000022128	Xrn2	87	55.698	Jaculus_jaculus
WBGene00006964	xrn-2	91	50.877	ENSLACG00000008307	XRN2	97	53.430	Latimeria_chalumnae
WBGene00006964	xrn-2	98	49.693	ENSLOCG00000016874	xrn2	91	54.783	Lepisosteus_oculatus
WBGene00006964	xrn-2	88	55.594	ENSLAFG00000014624	XRN2	87	55.698	Loxodonta_africana
WBGene00006964	xrn-2	89	55.204	ENSMFAG00000038122	XRN2	87	55.930	Macaca_fascicularis
WBGene00006964	xrn-2	89	55.204	ENSMMUG00000011405	XRN2	87	55.930	Macaca_mulatta
WBGene00006964	xrn-2	89	55.204	ENSMNEG00000040626	XRN2	87	55.930	Macaca_nemestrina
WBGene00006964	xrn-2	89	55.090	ENSMLEG00000041897	XRN2	87	55.814	Mandrillus_leucophaeus
WBGene00006964	xrn-2	88	53.998	ENSMAMG00000008633	xrn2	86	54.322	Mastacembelus_armatus
WBGene00006964	xrn-2	88	54.503	ENSMZEG00005022362	xrn2	94	54.206	Maylandia_zebra
WBGene00006964	xrn-2	88	54.378	ENSMGAG00000003196	XRN2	86	54.790	Meleagris_gallopavo
WBGene00006964	xrn-2	89	54.649	ENSMAUG00000021842	Xrn2	86	55.361	Mesocricetus_auratus
WBGene00006964	xrn-2	89	54.977	ENSMICG00000008126	XRN2	87	55.698	Microcebus_murinus
WBGene00006964	xrn-2	89	55.505	ENSMOCG00000012588	Xrn2	87	55.711	Microtus_ochrogaster
WBGene00006964	xrn-2	87	54.312	ENSMMOG00000017576	xrn2	96	54.579	Mola_mola
WBGene00006964	xrn-2	89	55.074	ENSMODG00000006163	XRN2	87	55.504	Monodelphis_domestica
WBGene00006964	xrn-2	89	53.143	ENSMALG00000011355	xrn2	95	56.169	Monopterus_albus
WBGene00006964	xrn-2	89	54.422	MGP_CAROLIEiJ_G0024400	Xrn2	86	55.374	Mus_caroli
WBGene00006964	xrn-2	89	54.535	ENSMUSG00000027433	Xrn2	86	55.491	Mus_musculus
WBGene00006964	xrn-2	89	54.535	MGP_PahariEiJ_G0025843	Xrn2	86	55.491	Mus_pahari
WBGene00006964	xrn-2	89	54.535	MGP_SPRETEiJ_G0025318	Xrn2	83	65.546	Mus_spretus
WBGene00006964	xrn-2	89	54.162	ENSMPUG00000001198	XRN2	81	54.960	Mustela_putorius_furo
WBGene00006964	xrn-2	89	55.090	ENSMLUG00000001536	XRN2	87	55.814	Myotis_lucifugus
WBGene00006964	xrn-2	89	54.864	ENSNGAG00000018138	Xrn2	87	55.465	Nannospalax_galili
WBGene00006964	xrn-2	88	54.787	ENSNBRG00000008062	xrn2	96	66.667	Neolamprologus_brichardi
WBGene00006964	xrn-2	89	55.090	ENSNLEG00000009991	XRN2	87	55.814	Nomascus_leucogenys
WBGene00006964	xrn-2	51	55.497	ENSOPRG00000001397	-	54	55.497	Ochotona_princeps
WBGene00006964	xrn-2	89	55.215	ENSODEG00000010745	-	87	55.944	Octodon_degus
WBGene00006964	xrn-2	87	50.288	ENSODEG00000000860	-	88	51.246	Octodon_degus
WBGene00006964	xrn-2	98	51.653	ENSONIG00000018720	xrn2	85	54.396	Oreochromis_niloticus
WBGene00006964	xrn-2	88	55.530	ENSOANG00000015673	XRN2	87	55.594	Ornithorhynchus_anatinus
WBGene00006964	xrn-2	89	55.317	ENSOCUG00000013468	XRN2	87	56.047	Oryctolagus_cuniculus
WBGene00006964	xrn-2	97	50.920	ENSORLG00000017213	xrn2	93	54.353	Oryzias_latipes
WBGene00006964	xrn-2	97	51.075	ENSORLG00020001824	xrn2	87	54.225	Oryzias_latipes_hni
WBGene00006964	xrn-2	97	51.227	ENSORLG00015019747	xrn2	87	54.577	Oryzias_latipes_hsok
WBGene00006964	xrn-2	90	53.160	ENSOMEG00000019820	xrn2	85	54.108	Oryzias_melastigma
WBGene00006964	xrn-2	88	55.620	ENSOGAG00000001068	XRN2	87	55.711	Otolemur_garnettii
WBGene00006964	xrn-2	85	55.095	ENSOARG00000004443	XRN2	86	55.276	Ovis_aries
WBGene00006964	xrn-2	89	55.090	ENSPPAG00000033549	XRN2	87	55.814	Pan_paniscus
WBGene00006964	xrn-2	89	55.090	ENSPPRG00000008732	XRN2	87	55.814	Panthera_pardus
WBGene00006964	xrn-2	86	54.895	ENSPTIG00000015683	XRN2	84	55.635	Panthera_tigris_altaica
WBGene00006964	xrn-2	89	55.090	ENSPTRG00000013308	XRN2	87	55.814	Pan_troglodytes
WBGene00006964	xrn-2	89	55.204	ENSPANG00000018088	XRN2	87	55.930	Papio_anubis
WBGene00006964	xrn-2	87	54.439	ENSPKIG00000016889	xrn2	86	54.439	Paramormyrops_kingsleyae
WBGene00006964	xrn-2	81	55.082	ENSPSIG00000014666	XRN2	99	55.082	Pelodiscus_sinensis
WBGene00006964	xrn-2	88	55.145	ENSPEMG00000000111	Xrn2	86	55.374	Peromyscus_maniculatus_bairdii
WBGene00006964	xrn-2	97	50.153	ENSPFOG00000004182	xrn2	86	53.721	Poecilia_formosa
WBGene00006964	xrn-2	87	53.721	ENSPLAG00000007351	xrn2	93	53.676	Poecilia_latipinna
WBGene00006964	xrn-2	92	49.567	ENSPMEG00000011798	xrn2	85	53.300	Poecilia_mexicana
WBGene00006964	xrn-2	87	53.918	ENSPREG00000012452	xrn2	93	53.918	Poecilia_reticulata
WBGene00006964	xrn-2	89	54.977	ENSPPYG00000010755	XRN2	86	55.958	Pongo_abelii
WBGene00006964	xrn-2	88	52.558	ENSPCAG00000011191	XRN2	86	52.638	Procavia_capensis
WBGene00006964	xrn-2	89	51.247	ENSPCOG00000016468	XRN2	85	51.865	Propithecus_coquereli
WBGene00006964	xrn-2	81	50.085	ENSPVAG00000004596	XRN2	79	50.085	Pteropus_vampyrus
WBGene00006964	xrn-2	88	53.580	ENSPNYG00000001765	xrn2	98	51.254	Pundamilia_nyererei
WBGene00006964	xrn-2	98	50.748	ENSPNAG00000010956	xrn2	86	54.335	Pygocentrus_nattereri
WBGene00006964	xrn-2	89	54.453	ENSRNOG00000011785	Xrn2	86	55.594	Rattus_norvegicus
WBGene00006964	xrn-2	87	56.126	ENSRBIG00000036193	XRN2	100	56.126	Rhinopithecus_bieti
WBGene00006964	xrn-2	89	55.204	ENSRROG00000044400	XRN2	78	55.930	Rhinopithecus_roxellana
WBGene00006964	xrn-2	80	39.605	YOR048C	RAT1	84	39.257	Saccharomyces_cerevisiae
WBGene00006964	xrn-2	89	55.543	ENSSBOG00000021014	XRN2	87	56.163	Saimiri_boliviensis_boliviensis
WBGene00006964	xrn-2	90	53.073	ENSSFOG00015001091	xrn2	86	54.482	Scleropages_formosus
WBGene00006964	xrn-2	89	53.417	ENSSMAG00000007834	xrn2	84	53.630	Scophthalmus_maximus
WBGene00006964	xrn-2	87	53.426	ENSSDUG00000012802	xrn2	95	53.497	Seriola_dumerili
WBGene00006964	xrn-2	88	54.157	ENSSLDG00000021273	xrn2	94	54.439	Seriola_lalandi_dorsalis
WBGene00006964	xrn-2	89	52.086	ENSSPUG00000005485	XRN2	85	52.934	Sphenodon_punctatus
WBGene00006964	xrn-2	97	50.881	ENSSPAG00000016027	xrn2	85	53.981	Stegastes_partitus
WBGene00006964	xrn-2	89	53.454	ENSSSCG00000007109	XRN2	86	54.133	Sus_scrofa
WBGene00006964	xrn-2	88	52.710	ENSTGUG00000007535	XRN2	87	52.975	Taeniopygia_guttata
WBGene00006964	xrn-2	88	53.403	ENSTRUG00000015489	xrn2	84	53.684	Takifugu_rubripes
WBGene00006964	xrn-2	93	51.987	ENSTNIG00000010712	xrn2	86	53.909	Tetraodon_nigroviridis
WBGene00006964	xrn-2	88	55.324	ENSTBEG00000004119	XRN2	87	55.491	Tupaia_belangeri
WBGene00006964	xrn-2	82	57.895	ENSTTRG00000009087	XRN2	80	57.895	Tursiops_truncatus
WBGene00006964	xrn-2	79	65.952	ENSUAMG00000024634	XRN2	92	65.952	Ursus_americanus
WBGene00006964	xrn-2	86	55.012	ENSUMAG00000004012	XRN2	82	55.755	Ursus_maritimus
WBGene00006964	xrn-2	68	63.694	ENSVPAG00000010694	XRN2	77	50.466	Vicugna_pacos
WBGene00006964	xrn-2	89	55.317	ENSVVUG00000012178	XRN2	87	56.047	Vulpes_vulpes
WBGene00006964	xrn-2	96	50.780	ENSXETG00000023501	xrn2	87	54.343	Xenopus_tropicalis
WBGene00006964	xrn-2	87	53.801	ENSXMAG00000000242	xrn2	93	61.353	Xiphophorus_maculatus