EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00007971 (Gene tree)
Gene ID: -
Gene Symbol: rpb-3
Alias: -
Full Name: RNA Polymerase II (B) subunit
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 1368 bases
Position: chrI:8728687-8730054
Accession: Q93338
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C36B1	RNA_pol_A_bac	PF01000.26	1.7e-38	1	1
C36B1	RNA_pol_L	PF01193.24	4.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C36B1.3	-	1021	NM_059960	C36B1.3	282 (aa)	NP_492361	Q93338

Gene Model

Click here to download WBGene00007971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00007971's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00007971	rpb-3	67	30.332	ENSG00000171453	POLR1C	69	37.079	Homo_sapiens
WBGene00007971	rpb-3	98	56.318	ENSG00000102978	POLR2C	100	63.043	Homo_sapiens
WBGene00007971	rpb-3	98	55.235	ENSAPOG00000011708	polr2c	98	55.235	Acanthochromis_polyacanthus
WBGene00007971	rpb-3	98	55.957	ENSAMEG00000017026	POLR2C	98	55.957	Ailuropoda_melanoleuca
WBGene00007971	rpb-3	98	55.435	ENSACIG00000012060	polr2c	97	55.435	Amphilophus_citrinellus
WBGene00007971	rpb-3	88	54.839	ENSAOCG00000018000	-	91	54.839	Amphiprion_ocellaris
WBGene00007971	rpb-3	98	55.235	ENSAOCG00000015665	polr2c	98	55.235	Amphiprion_ocellaris
WBGene00007971	rpb-3	98	55.235	ENSAOCG00000010477	-	98	55.235	Amphiprion_ocellaris
WBGene00007971	rpb-3	98	55.235	ENSAPEG00000007221	polr2c	98	55.235	Amphiprion_percula
WBGene00007971	rpb-3	98	54.513	ENSATEG00000007143	polr2c	98	54.513	Anabas_testudineus
WBGene00007971	rpb-3	93	30.450	ENSATEG00000005985	polr1c	84	30.450	Anabas_testudineus
WBGene00007971	rpb-3	96	52.768	ENSAPLG00000005385	POLR2C	96	52.768	Anas_platyrhynchos
WBGene00007971	rpb-3	78	48.869	ENSACAG00000011302	-	97	48.869	Anolis_carolinensis
WBGene00007971	rpb-3	98	55.235	ENSACAG00000007514	-	98	55.235	Anolis_carolinensis
WBGene00007971	rpb-3	98	56.318	ENSANAG00000005302	POLR2C	98	56.318	Aotus_nancymaae
WBGene00007971	rpb-3	98	55.435	ENSACLG00000004854	polr2c	97	55.435	Astatotilapia_calliptera
WBGene00007971	rpb-3	98	54.152	ENSAMXG00000012805	polr2c	98	54.513	Astyanax_mexicanus
WBGene00007971	rpb-3	98	55.957	ENSBTAG00000001856	POLR2C	98	55.957	Bos_taurus
WBGene00007971	rpb-3	98	56.318	ENSCJAG00000012016	POLR2C	98	56.318	Callithrix_jacchus
WBGene00007971	rpb-3	98	55.957	ENSCAFG00000008720	POLR2C	98	55.957	Canis_familiaris
WBGene00007971	rpb-3	98	55.957	ENSCAFG00020007660	POLR2C	98	55.957	Canis_lupus_dingo
WBGene00007971	rpb-3	98	55.957	ENSCHIG00000012072	POLR2C	98	55.957	Capra_hircus
WBGene00007971	rpb-3	98	55.596	ENSTSYG00000011076	POLR2C	98	55.596	Carlito_syrichta
WBGene00007971	rpb-3	68	50.000	ENSCAPG00000006608	POLR2C	79	50.000	Cavia_aperea
WBGene00007971	rpb-3	98	55.957	ENSCPOG00000004554	POLR2C	98	55.957	Cavia_porcellus
WBGene00007971	rpb-3	98	56.318	ENSCCAG00000035768	POLR2C	98	56.318	Cebus_capucinus
WBGene00007971	rpb-3	98	56.318	ENSCATG00000040803	POLR2C	98	56.318	Cercocebus_atys
WBGene00007971	rpb-3	98	55.957	ENSCLAG00000013676	POLR2C	98	55.957	Chinchilla_lanigera
WBGene00007971	rpb-3	98	56.318	ENSCSAG00000004901	POLR2C	98	56.318	Chlorocebus_sabaeus
WBGene00007971	rpb-3	98	52.347	ENSCHOG00000002986	POLR2C	98	52.347	Choloepus_hoffmanni
WBGene00007971	rpb-3	88	55.645	ENSCPBG00000022758	POLR2C	91	55.645	Chrysemys_picta_bellii
WBGene00007971	rpb-3	68	33.168	ENSCING00000003563	-	55	33.168	Ciona_intestinalis
WBGene00007971	rpb-3	95	51.736	ENSCING00000021895	-	99	51.736	Ciona_intestinalis
WBGene00007971	rpb-3	98	54.348	ENSCSAVG00000002167	-	97	54.348	Ciona_savignyi
WBGene00007971	rpb-3	98	56.318	ENSCANG00000034876	POLR2C	98	56.318	Colobus_angolensis_palliatus
WBGene00007971	rpb-3	98	55.957	ENSCGRG00001019477	Polr2c	98	55.957	Cricetulus_griseus_chok1gshd
WBGene00007971	rpb-3	98	55.957	ENSCGRG00000013273	Polr2c	98	55.957	Cricetulus_griseus_crigri
WBGene00007971	rpb-3	98	55.435	ENSCSEG00000001719	polr2c	97	55.435	Cynoglossus_semilaevis
WBGene00007971	rpb-3	67	31.313	ENSCSEG00000018097	polr1c	55	31.313	Cynoglossus_semilaevis
WBGene00007971	rpb-3	98	55.957	ENSCVAG00000004718	-	98	55.957	Cyprinodon_variegatus
WBGene00007971	rpb-3	74	60.766	ENSCVAG00000017931	polr2c	82	60.766	Cyprinodon_variegatus
WBGene00007971	rpb-3	98	53.791	ENSDARG00000033596	polr2c	98	53.791	Danio_rerio
WBGene00007971	rpb-3	91	36.398	ENSDNOG00000036028	-	96	36.398	Dasypus_novemcinctus
WBGene00007971	rpb-3	98	55.957	ENSDNOG00000030752	-	79	55.957	Dasypus_novemcinctus
WBGene00007971	rpb-3	98	55.957	ENSDORG00000000081	Polr2c	98	55.957	Dipodomys_ordii
WBGene00007971	rpb-3	99	57.857	FBgn0026373	RpII33	99	57.857	Drosophila_melanogaster
WBGene00007971	rpb-3	98	45.487	ENSETEG00000004185	POLR2C	98	45.487	Echinops_telfairi
WBGene00007971	rpb-3	72	30.594	ENSEBUG00000013725	polr1c	63	30.594	Eptatretus_burgeri
WBGene00007971	rpb-3	98	50.181	ENSEBUG00000016262	polr2c	98	50.181	Eptatretus_burgeri
WBGene00007971	rpb-3	98	55.957	ENSEASG00005005406	POLR2C	98	55.957	Equus_asinus_asinus
WBGene00007971	rpb-3	98	55.957	ENSECAG00000015818	POLR2C	98	55.957	Equus_caballus
WBGene00007971	rpb-3	98	45.126	ENSEEUG00000003658	POLR2C	98	45.126	Erinaceus_europaeus
WBGene00007971	rpb-3	92	30.037	ENSELUG00000013027	polr1c	81	30.037	Esox_lucius
WBGene00007971	rpb-3	98	55.235	ENSELUG00000012259	polr2c	98	55.235	Esox_lucius
WBGene00007971	rpb-3	98	55.957	ENSFCAG00000034622	POLR2C	98	55.957	Felis_catus
WBGene00007971	rpb-3	98	55.235	ENSFALG00000006931	POLR2C	98	55.235	Ficedula_albicollis
WBGene00007971	rpb-3	98	54.513	ENSFDAG00000008641	POLR2C	98	54.513	Fukomys_damarensis
WBGene00007971	rpb-3	98	55.596	ENSFHEG00000020739	polr2c	98	55.596	Fundulus_heteroclitus
WBGene00007971	rpb-3	92	30.403	ENSFHEG00000000262	polr1c	81	30.403	Fundulus_heteroclitus
WBGene00007971	rpb-3	98	54.152	ENSGMOG00000004203	polr2c	98	54.152	Gadus_morhua
WBGene00007971	rpb-3	98	55.235	ENSGALG00000001168	POLR2C	98	55.235	Gallus_gallus
WBGene00007971	rpb-3	67	30.918	ENSGAFG00000010153	polr1c	56	30.918	Gambusia_affinis
WBGene00007971	rpb-3	98	55.596	ENSGAFG00000021951	polr2c	98	55.596	Gambusia_affinis
WBGene00007971	rpb-3	67	32.161	ENSGACG00000002453	polr1c	52	32.161	Gasterosteus_aculeatus
WBGene00007971	rpb-3	98	54.152	ENSGACG00000002194	polr2c	98	54.152	Gasterosteus_aculeatus
WBGene00007971	rpb-3	88	55.645	ENSGAGG00000016942	POLR2C	85	55.645	Gopherus_agassizii
WBGene00007971	rpb-3	98	56.318	ENSGGOG00000012415	POLR2C	98	56.318	Gorilla_gorilla
WBGene00007971	rpb-3	98	55.435	ENSHBUG00000023040	polr2c	97	55.435	Haplochromis_burtoni
WBGene00007971	rpb-3	98	55.957	ENSHGLG00000013465	POLR2C	98	55.957	Heterocephalus_glaber_female
WBGene00007971	rpb-3	98	55.957	ENSHGLG00100011949	POLR2C	98	55.957	Heterocephalus_glaber_male
WBGene00007971	rpb-3	94	30.233	ENSHCOG00000002179	polr1c	85	30.233	Hippocampus_comes
WBGene00007971	rpb-3	98	56.679	ENSHCOG00000007066	polr2c	98	56.679	Hippocampus_comes
WBGene00007971	rpb-3	98	55.596	ENSIPUG00000009231	polr2c	98	55.957	Ictalurus_punctatus
WBGene00007971	rpb-3	98	49.819	ENSSTOG00000031354	-	98	49.819	Ictidomys_tridecemlineatus
WBGene00007971	rpb-3	98	55.957	ENSSTOG00000015150	-	98	55.957	Ictidomys_tridecemlineatus
WBGene00007971	rpb-3	98	55.957	ENSJJAG00000023057	Polr2c	98	55.957	Jaculus_jaculus
WBGene00007971	rpb-3	98	55.596	ENSKMAG00000016196	polr2c	98	55.596	Kryptolebias_marmoratus
WBGene00007971	rpb-3	92	30.970	ENSKMAG00000014305	polr1c	79	30.970	Kryptolebias_marmoratus
WBGene00007971	rpb-3	98	53.069	ENSLBEG00000007369	polr2c	98	53.069	Labrus_bergylta
WBGene00007971	rpb-3	98	44.753	ENSLACG00000003703	POLR2C	98	44.753	Latimeria_chalumnae
WBGene00007971	rpb-3	98	55.596	ENSLOCG00000003215	polr2c	98	55.596	Lepisosteus_oculatus
WBGene00007971	rpb-3	98	55.957	ENSLAFG00000027230	POLR2C	98	55.957	Loxodonta_africana
WBGene00007971	rpb-3	98	56.318	ENSMFAG00000016861	POLR2C	98	56.318	Macaca_fascicularis
WBGene00007971	rpb-3	98	56.318	ENSMMUG00000020474	POLR2C	98	56.318	Macaca_mulatta
WBGene00007971	rpb-3	98	56.318	ENSMNEG00000033565	POLR2C	98	56.318	Macaca_nemestrina
WBGene00007971	rpb-3	98	56.318	ENSMLEG00000032412	POLR2C	98	56.318	Mandrillus_leucophaeus
WBGene00007971	rpb-3	92	30.224	ENSMAMG00000008700	polr1c	79	30.224	Mastacembelus_armatus
WBGene00007971	rpb-3	98	55.235	ENSMAMG00000013205	polr2c	98	55.235	Mastacembelus_armatus
WBGene00007971	rpb-3	98	55.435	ENSMZEG00005015329	polr2c	97	55.435	Maylandia_zebra
WBGene00007971	rpb-3	98	48.375	ENSMAUG00000019031	-	100	48.375	Mesocricetus_auratus
WBGene00007971	rpb-3	98	49.097	ENSMAUG00000000779	-	98	49.097	Mesocricetus_auratus
WBGene00007971	rpb-3	98	57.040	ENSMICG00000045178	POLR2C	98	57.040	Microcebus_murinus
WBGene00007971	rpb-3	98	55.072	ENSMOCG00000013652	Polr2c	97	55.072	Microtus_ochrogaster
WBGene00007971	rpb-3	98	54.152	ENSMMOG00000010560	polr2c	98	54.152	Mola_mola
WBGene00007971	rpb-3	98	55.235	ENSMODG00000013540	POLR2C	98	55.235	Monodelphis_domestica
WBGene00007971	rpb-3	98	55.235	ENSMALG00000004581	polr2c	98	55.235	Monopterus_albus
WBGene00007971	rpb-3	98	55.957	MGP_CAROLIEiJ_G0031409	Polr2c	98	55.957	Mus_caroli
WBGene00007971	rpb-3	98	55.957	ENSMUSG00000031783	Polr2c	98	55.957	Mus_musculus
WBGene00007971	rpb-3	98	55.957	MGP_PahariEiJ_G0023007	Polr2c	98	55.957	Mus_pahari
WBGene00007971	rpb-3	98	55.957	MGP_SPRETEiJ_G0032528	Polr2c	98	55.957	Mus_spretus
WBGene00007971	rpb-3	98	55.957	ENSMPUG00000004483	POLR2C	98	55.957	Mustela_putorius_furo
WBGene00007971	rpb-3	70	48.980	ENSMLUG00000023530	-	97	48.980	Myotis_lucifugus
WBGene00007971	rpb-3	98	54.874	ENSMLUG00000029495	-	98	54.874	Myotis_lucifugus
WBGene00007971	rpb-3	98	55.957	ENSMLUG00000025422	-	98	55.957	Myotis_lucifugus
WBGene00007971	rpb-3	98	55.957	ENSMLUG00000015833	-	98	55.957	Myotis_lucifugus
WBGene00007971	rpb-3	98	42.806	ENSNGAG00000010540	-	97	42.806	Nannospalax_galili
WBGene00007971	rpb-3	98	55.957	ENSNGAG00000012249	-	98	55.957	Nannospalax_galili
WBGene00007971	rpb-3	98	44.404	ENSNLEG00000003034	POLR2C	98	44.404	Nomascus_leucogenys
WBGene00007971	rpb-3	98	50.903	ENSMEUG00000014741	POLR2C	98	50.903	Notamacropus_eugenii
WBGene00007971	rpb-3	98	54.710	ENSOPRG00000006979	POLR2C	97	54.710	Ochotona_princeps
WBGene00007971	rpb-3	98	55.957	ENSODEG00000016934	POLR2C	98	55.957	Octodon_degus
WBGene00007971	rpb-3	98	55.435	ENSONIG00000010914	polr2c	97	55.435	Oreochromis_niloticus
WBGene00007971	rpb-3	82	53.448	ENSOANG00000009337	POLR2C	97	53.448	Ornithorhynchus_anatinus
WBGene00007971	rpb-3	98	55.797	ENSOCUG00000014984	POLR2C	97	55.797	Oryctolagus_cuniculus
WBGene00007971	rpb-3	98	54.513	ENSORLG00000015108	polr2c	98	54.513	Oryzias_latipes
WBGene00007971	rpb-3	98	54.874	ENSORLG00020013566	polr2c	98	54.874	Oryzias_latipes_hni
WBGene00007971	rpb-3	67	32.512	ENSORLG00020006489	POLR1C	53	32.512	Oryzias_latipes_hni
WBGene00007971	rpb-3	98	54.513	ENSORLG00015003751	polr2c	98	54.513	Oryzias_latipes_hsok
WBGene00007971	rpb-3	98	55.235	ENSOMEG00000019444	polr2c	98	55.235	Oryzias_melastigma
WBGene00007971	rpb-3	97	34.307	ENSOGAG00000029610	-	98	34.307	Otolemur_garnettii
WBGene00007971	rpb-3	98	56.679	ENSOGAG00000016866	POLR2C	98	56.679	Otolemur_garnettii
WBGene00007971	rpb-3	98	55.957	ENSOARG00000000302	POLR2C	98	55.957	Ovis_aries
WBGene00007971	rpb-3	67	30.332	ENSPPAG00000043678	POLR1C	56	30.332	Pan_paniscus
WBGene00007971	rpb-3	98	51.986	ENSPPAG00000042822	POLR2C	98	51.986	Pan_paniscus
WBGene00007971	rpb-3	98	55.957	ENSPPRG00000003215	POLR2C	98	55.957	Panthera_pardus
WBGene00007971	rpb-3	95	54.307	ENSPTIG00000010297	POLR2C	94	54.307	Panthera_tigris_altaica
WBGene00007971	rpb-3	67	30.332	ENSPTRG00000018202	POLR1C	56	30.332	Pan_troglodytes
WBGene00007971	rpb-3	98	56.318	ENSPTRG00000008157	POLR2C	98	56.318	Pan_troglodytes
WBGene00007971	rpb-3	98	56.318	ENSPANG00000006264	POLR2C	98	56.318	Papio_anubis
WBGene00007971	rpb-3	98	54.513	ENSPKIG00000005228	polr2c	98	54.513	Paramormyrops_kingsleyae
WBGene00007971	rpb-3	88	55.645	ENSPSIG00000016112	POLR2C	88	55.645	Pelodiscus_sinensis
WBGene00007971	rpb-3	74	58.654	ENSPMGG00000021249	polr2c	83	58.654	Periophthalmus_magnuspinnatus
WBGene00007971	rpb-3	98	55.957	ENSPEMG00000014204	Polr2c	98	55.957	Peromyscus_maniculatus_bairdii
WBGene00007971	rpb-3	84	59.322	ENSPMAG00000004827	polr2c	100	59.322	Petromyzon_marinus
WBGene00007971	rpb-3	67	30.332	ENSPCIG00000028137	POLR1C	51	30.332	Phascolarctos_cinereus
WBGene00007971	rpb-3	98	55.235	ENSPCIG00000015111	POLR2C	98	55.235	Phascolarctos_cinereus
WBGene00007971	rpb-3	98	55.596	ENSPFOG00000024666	polr2c	98	55.596	Poecilia_formosa
WBGene00007971	rpb-3	98	55.596	ENSPLAG00000019750	polr2c	98	55.596	Poecilia_latipinna
WBGene00007971	rpb-3	98	55.596	ENSPMEG00000001741	polr2c	98	55.596	Poecilia_mexicana
WBGene00007971	rpb-3	98	50.357	ENSPREG00000003090	polr2c	98	50.357	Poecilia_reticulata
WBGene00007971	rpb-3	98	56.318	ENSPPYG00000007390	POLR2C	98	56.318	Pongo_abelii
WBGene00007971	rpb-3	82	54.545	ENSPCAG00000002423	POLR2C	97	54.545	Procavia_capensis
WBGene00007971	rpb-3	98	57.040	ENSPCOG00000017282	POLR2C	98	57.040	Propithecus_coquereli
WBGene00007971	rpb-3	98	55.957	ENSPVAG00000001399	POLR2C	98	55.957	Pteropus_vampyrus
WBGene00007971	rpb-3	98	55.435	ENSPNYG00000003756	polr2c	97	55.435	Pundamilia_nyererei
WBGene00007971	rpb-3	98	55.957	ENSPNAG00000012133	polr2c	98	55.957	Pygocentrus_nattereri
WBGene00007971	rpb-3	98	55.957	ENSRNOG00000015720	Polr2c	98	55.957	Rattus_norvegicus
WBGene00007971	rpb-3	98	56.318	ENSRBIG00000026549	POLR2C	98	56.318	Rhinopithecus_bieti
WBGene00007971	rpb-3	98	56.318	ENSRROG00000045745	POLR2C	98	56.318	Rhinopithecus_roxellana
WBGene00007971	rpb-3	94	40.741	YIL021W	RPB3	81	40.741	Saccharomyces_cerevisiae
WBGene00007971	rpb-3	98	56.318	ENSSBOG00000030004	POLR2C	98	56.318	Saimiri_boliviensis_boliviensis
WBGene00007971	rpb-3	67	30.332	ENSSBOG00000025735	POLR1C	62	30.332	Saimiri_boliviensis_boliviensis
WBGene00007971	rpb-3	98	55.235	ENSSFOG00015023460	polr2c	98	55.235	Scleropages_formosus
WBGene00007971	rpb-3	98	54.348	ENSSMAG00000002827	polr2c	79	54.348	Scophthalmus_maximus
WBGene00007971	rpb-3	98	54.874	ENSSDUG00000003354	polr2c	98	54.874	Seriola_dumerili
WBGene00007971	rpb-3	98	54.874	ENSSLDG00000003555	polr2c	98	54.874	Seriola_lalandi_dorsalis
WBGene00007971	rpb-3	57	49.383	ENSSARG00000001565	-	100	49.383	Sorex_araneus
WBGene00007971	rpb-3	98	55.596	ENSSPUG00000012934	POLR2C	98	55.596	Sphenodon_punctatus
WBGene00007971	rpb-3	98	55.235	ENSSPAG00000005108	polr2c	98	55.235	Stegastes_partitus
WBGene00007971	rpb-3	98	55.957	ENSSSCG00000025454	POLR2C	98	55.957	Sus_scrofa
WBGene00007971	rpb-3	98	55.235	ENSTGUG00000004996	POLR2C	98	55.235	Taeniopygia_guttata
WBGene00007971	rpb-3	98	54.874	ENSTRUG00000004676	polr2c	98	54.874	Takifugu_rubripes
WBGene00007971	rpb-3	98	54.513	ENSTNIG00000008851	polr2c	98	54.513	Tetraodon_nigroviridis
WBGene00007971	rpb-3	98	54.513	ENSTBEG00000009442	POLR2C	98	54.513	Tupaia_belangeri
WBGene00007971	rpb-3	82	54.113	ENSTTRG00000010060	POLR2C	97	54.113	Tursiops_truncatus
WBGene00007971	rpb-3	98	55.957	ENSUAMG00000014170	POLR2C	98	55.957	Ursus_americanus
WBGene00007971	rpb-3	90	55.512	ENSUMAG00000021686	POLR2C	95	55.512	Ursus_maritimus
WBGene00007971	rpb-3	68	53.646	ENSVPAG00000007590	POLR2C	100	53.646	Vicugna_pacos
WBGene00007971	rpb-3	54	53.642	ENSVVUG00000003058	-	93	53.642	Vulpes_vulpes
WBGene00007971	rpb-3	98	55.235	ENSVVUG00000023516	-	98	55.235	Vulpes_vulpes
WBGene00007971	rpb-3	98	51.986	ENSXETG00000013784	polr2c	98	51.986	Xenopus_tropicalis
WBGene00007971	rpb-3	67	31.068	ENSXCOG00000014185	polr1c	55	31.068	Xiphophorus_couchianus
WBGene00007971	rpb-3	98	55.596	ENSXCOG00000020734	polr2c	98	55.596	Xiphophorus_couchianus
WBGene00007971	rpb-3	67	30.918	ENSXMAG00000015076	polr1c	56	30.918	Xiphophorus_maculatus
WBGene00007971	rpb-3	98	55.596	ENSXMAG00000015984	polr2c	98	55.596	Xiphophorus_maculatus