EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00008151 (Gene tree)
Gene ID: -
Gene Symbol: C47E12.7
Alias: -
Full Name: Ribosomal RNA processing protein 1 homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 1553 bases
Position: chrIV:9980724-9982276
Accession: Q18674
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C47E12	Nop52	PF05997.12	7.8e-53	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C47E12.7	-	1323	NM_069397	C47E12.7	397 (aa)	NP_501798	Q18674

Gene Model

Click here to download WBGene00008151's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00008151's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00008151	C47E12.7	56	33.190	ENSAOCG00000017894	-	64	33.195	Amphiprion_ocellaris
WBGene00008151	C47E12.7	74	32.686	ENSCING00000003304	-	76	32.686	Ciona_intestinalis
WBGene00008151	C47E12.7	56	31.858	ENSCGRG00001023882	-	59	41.791	Cricetulus_griseus_chok1gshd
WBGene00008151	C47E12.7	57	31.915	ENSLBEG00000021417	RRP1	58	31.915	Labrus_bergylta
WBGene00008151	C47E12.7	62	30.000	ENSLAFG00000000766	RRP1B	59	30.000	Loxodonta_africana
WBGene00008151	C47E12.7	56	30.638	ENSMOCG00000015687	Rrp1	53	31.020	Microtus_ochrogaster
WBGene00008151	C47E12.7	55	32.727	ENSMMOG00000019175	rrp1	58	32.203	Mola_mola
WBGene00008151	C47E12.7	70	31.579	ENSMALG00000010310	rrp1	70	31.579	Monopterus_albus
WBGene00008151	C47E12.7	57	31.799	MGP_CAROLIEiJ_G0015508	Rrp1	51	31.474	Mus_caroli
WBGene00008151	C47E12.7	57	32.218	MGP_SPRETEiJ_G0016321	Rrp1	51	31.873	Mus_spretus
WBGene00008151	C47E12.7	58	31.429	ENSMPUG00000009826	RRP1	50	31.429	Mustela_putorius_furo
WBGene00008151	C47E12.7	53	31.416	ENSNGAG00000022344	Rrp1	54	30.797	Nannospalax_galili
WBGene00008151	C47E12.7	53	31.481	ENSOANG00000006472	-	58	31.481	Ornithorhynchus_anatinus
WBGene00008151	C47E12.7	58	33.755	ENSSMAG00000016847	-	59	33.755	Scophthalmus_maximus