EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00008877 (Gene tree)
Gene ID: -
Gene Symbol: rtcb-1
Alias: -
Full Name: tRNA-splicing ligase RtcB homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 2267 bases
Position: chrI:9390829-9393095
Accession: P90838
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F16A11	RtcB	PF01139.17	4.5e-148	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F16A11.2b	-	1586	NR_136370	-	- (aa)	-	-
F16A11.2a	-	1644	NM_060097	F16A11.2a	505 (aa)	NP_492498	P90838

Gene Model

Click here to download WBGene00008877's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00008877's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00008877	rtcb-1	100	73.069	ENSG00000100220	RTCB	100	73.069	Homo_sapiens
WBGene00008877	rtcb-1	100	74.851	ENSAPOG00000006040	rtcb	100	74.851	Acanthochromis_polyacanthus
WBGene00008877	rtcb-1	100	73.069	ENSAMEG00000016152	RTCB	100	73.069	Ailuropoda_melanoleuca
WBGene00008877	rtcb-1	100	70.693	ENSACIG00000009083	rtcb	100	70.693	Amphilophus_citrinellus
WBGene00008877	rtcb-1	100	74.851	ENSAOCG00000005662	rtcb	100	76.304	Amphiprion_ocellaris
WBGene00008877	rtcb-1	100	74.851	ENSAPEG00000024701	rtcb	100	74.851	Amphiprion_percula
WBGene00008877	rtcb-1	96	71.663	ENSAPEG00000024653	rtcb	100	71.663	Amphiprion_percula
WBGene00008877	rtcb-1	100	74.257	ENSATEG00000000618	rtcb	100	74.257	Anabas_testudineus
WBGene00008877	rtcb-1	100	72.254	ENSACAG00000014817	RTCB	100	72.254	Anolis_carolinensis
WBGene00008877	rtcb-1	72	86.111	ENSANAG00000023724	-	86	86.111	Aotus_nancymaae
WBGene00008877	rtcb-1	100	62.178	ENSANAG00000018191	-	91	62.178	Aotus_nancymaae
WBGene00008877	rtcb-1	100	75.248	ENSACLG00000008367	rtcb	100	76.739	Astatotilapia_calliptera
WBGene00008877	rtcb-1	100	73.465	ENSAMXG00000042320	rtcb	100	73.465	Astyanax_mexicanus
WBGene00008877	rtcb-1	100	73.267	ENSBTAG00000011070	RTCB	100	73.267	Bos_taurus
WBGene00008877	rtcb-1	100	73.069	ENSCJAG00000006128	RTCB	100	73.069	Callithrix_jacchus
WBGene00008877	rtcb-1	100	73.069	ENSCAFG00000001785	RTCB	100	73.069	Canis_familiaris
WBGene00008877	rtcb-1	100	69.307	ENSCAFG00000010789	-	100	69.307	Canis_familiaris
WBGene00008877	rtcb-1	87	70.227	ENSCAFG00020018953	-	99	70.227	Canis_lupus_dingo
WBGene00008877	rtcb-1	100	73.069	ENSCAFG00020004890	-	100	73.069	Canis_lupus_dingo
WBGene00008877	rtcb-1	100	73.267	ENSCHIG00000027009	-	100	73.267	Capra_hircus
WBGene00008877	rtcb-1	100	73.069	ENSTSYG00000012320	RTCB	100	73.069	Carlito_syrichta
WBGene00008877	rtcb-1	94	74.895	ENSCAPG00000011647	RTCB	96	74.895	Cavia_aperea
WBGene00008877	rtcb-1	100	73.069	ENSCCAG00000000618	RTCB	100	73.069	Cebus_capucinus
WBGene00008877	rtcb-1	100	72.871	ENSCATG00000033424	RTCB	100	72.871	Cercocebus_atys
WBGene00008877	rtcb-1	100	73.267	ENSCLAG00000007997	RTCB	100	73.267	Chinchilla_lanigera
WBGene00008877	rtcb-1	100	72.871	ENSCSAG00000008351	RTCB	100	72.871	Chlorocebus_sabaeus
WBGene00008877	rtcb-1	100	61.386	ENSCHOG00000009123	RTCB	100	61.386	Choloepus_hoffmanni
WBGene00008877	rtcb-1	100	73.267	ENSCPBG00000023184	RTCB	100	73.267	Chrysemys_picta_bellii
WBGene00008877	rtcb-1	100	74.653	ENSCING00000003830	-	100	74.653	Ciona_intestinalis
WBGene00008877	rtcb-1	100	75.248	ENSCSAVG00000008124	-	99	75.248	Ciona_savignyi
WBGene00008877	rtcb-1	100	69.703	ENSCANG00000001891	RTCB	100	69.703	Colobus_angolensis_palliatus
WBGene00008877	rtcb-1	100	73.069	ENSCGRG00001011173	Rtcb	100	73.069	Cricetulus_griseus_chok1gshd
WBGene00008877	rtcb-1	93	74.894	ENSCGRG00000009587	-	96	74.894	Cricetulus_griseus_crigri
WBGene00008877	rtcb-1	100	73.069	ENSCSEG00000003986	rtcb	100	73.069	Cynoglossus_semilaevis
WBGene00008877	rtcb-1	81	74.878	ENSCVAG00000000569	rtcb	93	74.878	Cyprinodon_variegatus
WBGene00008877	rtcb-1	100	74.257	ENSDARG00000101047	rtcb	100	74.257	Danio_rerio
WBGene00008877	rtcb-1	80	69.779	ENSDNOG00000012425	RTCB	99	69.779	Dasypus_novemcinctus
WBGene00008877	rtcb-1	100	73.267	ENSDORG00000010855	Rtcb	100	73.267	Dipodomys_ordii
WBGene00008877	rtcb-1	99	74.950	FBgn0032781	RtcB	99	74.950	Drosophila_melanogaster
WBGene00008877	rtcb-1	100	69.307	ENSETEG00000001988	RTCB	100	69.307	Echinops_telfairi
WBGene00008877	rtcb-1	100	70.495	ENSEBUG00000014235	rtcb	100	70.495	Eptatretus_burgeri
WBGene00008877	rtcb-1	100	73.267	ENSEASG00005019059	RTCB	100	73.267	Equus_asinus_asinus
WBGene00008877	rtcb-1	100	73.267	ENSECAG00000023998	RTCB	100	73.267	Equus_caballus
WBGene00008877	rtcb-1	89	69.575	ENSEEUG00000006251	RTCB	100	69.575	Erinaceus_europaeus
WBGene00008877	rtcb-1	100	64.839	ENSELUG00000009275	rtcb	100	64.839	Esox_lucius
WBGene00008877	rtcb-1	100	73.069	ENSFCAG00000026480	RTCB	100	73.069	Felis_catus
WBGene00008877	rtcb-1	100	73.465	ENSFALG00000013334	RTCB	100	73.465	Ficedula_albicollis
WBGene00008877	rtcb-1	100	72.871	ENSFDAG00000018150	RTCB	100	72.871	Fukomys_damarensis
WBGene00008877	rtcb-1	100	74.851	ENSFHEG00000009595	rtcb	100	74.851	Fundulus_heteroclitus
WBGene00008877	rtcb-1	100	73.267	ENSGMOG00000018882	rtcb	100	73.267	Gadus_morhua
WBGene00008877	rtcb-1	100	73.663	ENSGALG00000012611	RTCB	100	73.663	Gallus_gallus
WBGene00008877	rtcb-1	100	74.455	ENSGAFG00000004198	rtcb	100	74.455	Gambusia_affinis
WBGene00008877	rtcb-1	100	73.267	ENSGACG00000000586	rtcb	100	73.267	Gasterosteus_aculeatus
WBGene00008877	rtcb-1	93	71.702	ENSGAGG00000019133	RTCB	98	71.702	Gopherus_agassizii
WBGene00008877	rtcb-1	100	73.069	ENSGGOG00000011402	RTCB	100	73.069	Gorilla_gorilla
WBGene00008877	rtcb-1	100	75.248	ENSHBUG00000020571	rtcb	100	75.248	Haplochromis_burtoni
WBGene00008877	rtcb-1	93	53.390	ENSHGLG00000001066	-	99	53.390	Heterocephalus_glaber_female
WBGene00008877	rtcb-1	100	72.871	ENSHGLG00000004492	RTCB	100	72.871	Heterocephalus_glaber_female
WBGene00008877	rtcb-1	100	72.871	ENSHGLG00100008965	RTCB	100	72.871	Heterocephalus_glaber_male
WBGene00008877	rtcb-1	100	73.373	ENSHCOG00000006450	rtcb	100	73.373	Hippocampus_comes
WBGene00008877	rtcb-1	100	74.059	ENSIPUG00000015443	rtcb	100	74.059	Ictalurus_punctatus
WBGene00008877	rtcb-1	100	73.267	ENSSTOG00000003878	RTCB	100	73.267	Ictidomys_tridecemlineatus
WBGene00008877	rtcb-1	100	73.069	ENSJJAG00000010667	Rtcb	100	73.069	Jaculus_jaculus
WBGene00008877	rtcb-1	100	74.455	ENSKMAG00000013178	rtcb	100	74.455	Kryptolebias_marmoratus
WBGene00008877	rtcb-1	100	73.465	ENSLBEG00000010566	RTCB	100	73.465	Labrus_bergylta
WBGene00008877	rtcb-1	100	72.871	ENSLBEG00000000214	rtcb	100	72.871	Labrus_bergylta
WBGene00008877	rtcb-1	100	72.673	ENSLACG00000013033	RTCB	100	72.673	Latimeria_chalumnae
WBGene00008877	rtcb-1	100	73.069	ENSLOCG00000016515	rtcb	99	73.069	Lepisosteus_oculatus
WBGene00008877	rtcb-1	100	72.871	ENSLAFG00000002082	RTCB	100	72.871	Loxodonta_africana
WBGene00008877	rtcb-1	100	72.871	ENSMFAG00000034419	RTCB	100	72.871	Macaca_fascicularis
WBGene00008877	rtcb-1	100	72.871	ENSMMUG00000006720	RTCB	100	72.871	Macaca_mulatta
WBGene00008877	rtcb-1	100	72.871	ENSMNEG00000040669	RTCB	100	72.871	Macaca_nemestrina
WBGene00008877	rtcb-1	100	72.871	ENSMLEG00000040505	RTCB	100	72.871	Mandrillus_leucophaeus
WBGene00008877	rtcb-1	100	74.257	ENSMAMG00000020676	rtcb	100	74.257	Mastacembelus_armatus
WBGene00008877	rtcb-1	100	75.248	ENSMZEG00005018942	rtcb	100	75.248	Maylandia_zebra
WBGene00008877	rtcb-1	100	73.373	ENSMGAG00000012805	RTCB	100	73.373	Meleagris_gallopavo
WBGene00008877	rtcb-1	60	79.646	ENSMAUG00000008301	Rtcb	100	79.646	Mesocricetus_auratus
WBGene00008877	rtcb-1	100	58.218	ENSMICG00000036677	-	100	58.218	Microcebus_murinus
WBGene00008877	rtcb-1	100	73.069	ENSMICG00000013303	-	100	73.069	Microcebus_murinus
WBGene00008877	rtcb-1	100	73.267	ENSMOCG00000002440	Rtcb	100	73.267	Microtus_ochrogaster
WBGene00008877	rtcb-1	100	74.455	ENSMMOG00000005987	rtcb	100	74.455	Mola_mola
WBGene00008877	rtcb-1	100	73.069	ENSMODG00000001414	RTCB	100	73.069	Monodelphis_domestica
WBGene00008877	rtcb-1	100	73.861	ENSMALG00000007603	rtcb	100	73.861	Monopterus_albus
WBGene00008877	rtcb-1	100	73.267	MGP_CAROLIEiJ_G0015689	Rtcb	100	73.267	Mus_caroli
WBGene00008877	rtcb-1	100	73.267	ENSMUSG00000001783	Rtcb	100	73.267	Mus_musculus
WBGene00008877	rtcb-1	100	73.267	MGP_PahariEiJ_G0031396	Rtcb	100	73.267	Mus_pahari
WBGene00008877	rtcb-1	100	73.267	MGP_SPRETEiJ_G0016507	Rtcb	100	73.267	Mus_spretus
WBGene00008877	rtcb-1	100	73.069	ENSMPUG00000012285	RTCB	100	73.069	Mustela_putorius_furo
WBGene00008877	rtcb-1	100	71.400	ENSMLUG00000007803	RTCB	100	71.400	Myotis_lucifugus
WBGene00008877	rtcb-1	70	74.667	ENSNGAG00000005093	Rtcb	100	74.667	Nannospalax_galili
WBGene00008877	rtcb-1	100	75.446	ENSNBRG00000017202	rtcb	100	75.446	Neolamprologus_brichardi
WBGene00008877	rtcb-1	100	73.069	ENSNLEG00000004960	RTCB	100	73.069	Nomascus_leucogenys
WBGene00008877	rtcb-1	100	54.851	ENSMEUG00000007809	-	100	54.851	Notamacropus_eugenii
WBGene00008877	rtcb-1	73	72.036	ENSOPRG00000003488	RTCB	79	72.036	Ochotona_princeps
WBGene00008877	rtcb-1	100	49.901	ENSODEG00000005042	-	100	49.901	Octodon_degus
WBGene00008877	rtcb-1	77	76.015	ENSODEG00000013033	-	100	76.015	Octodon_degus
WBGene00008877	rtcb-1	100	74.257	ENSONIG00000007474	rtcb	100	74.257	Oreochromis_niloticus
WBGene00008877	rtcb-1	100	73.069	ENSOANG00000005524	RTCB	100	73.069	Ornithorhynchus_anatinus
WBGene00008877	rtcb-1	93	72.128	ENSOCUG00000008270	RTCB	96	72.128	Oryctolagus_cuniculus
WBGene00008877	rtcb-1	100	74.059	ENSORLG00000020093	rtcb	100	74.059	Oryzias_latipes
WBGene00008877	rtcb-1	100	73.861	ENSORLG00020003706	rtcb	99	75.527	Oryzias_latipes_hni
WBGene00008877	rtcb-1	100	74.059	ENSORLG00015002968	rtcb	100	74.059	Oryzias_latipes_hsok
WBGene00008877	rtcb-1	100	73.861	ENSOMEG00000021278	rtcb	100	73.861	Oryzias_melastigma
WBGene00008877	rtcb-1	100	73.069	ENSOGAG00000001425	RTCB	100	73.069	Otolemur_garnettii
WBGene00008877	rtcb-1	100	73.267	ENSOARG00000018008	RTCB	100	73.267	Ovis_aries
WBGene00008877	rtcb-1	100	73.069	ENSPPAG00000028667	RTCB	100	73.069	Pan_paniscus
WBGene00008877	rtcb-1	100	73.069	ENSPPRG00000004038	RTCB	100	73.069	Panthera_pardus
WBGene00008877	rtcb-1	94	72.421	ENSPTIG00000020499	RTCB	97	72.421	Panthera_tigris_altaica
WBGene00008877	rtcb-1	100	73.069	ENSPTRG00000014287	RTCB	100	73.069	Pan_troglodytes
WBGene00008877	rtcb-1	100	72.871	ENSPANG00000016035	RTCB	100	72.871	Papio_anubis
WBGene00008877	rtcb-1	100	73.663	ENSPKIG00000001881	rtcb	100	73.663	Paramormyrops_kingsleyae
WBGene00008877	rtcb-1	91	74.783	ENSPSIG00000011690	RTCB	100	74.783	Pelodiscus_sinensis
WBGene00008877	rtcb-1	100	73.663	ENSPMGG00000016672	rtcb	100	73.663	Periophthalmus_magnuspinnatus
WBGene00008877	rtcb-1	100	73.267	ENSPEMG00000019548	Rtcb	100	73.267	Peromyscus_maniculatus_bairdii
WBGene00008877	rtcb-1	100	73.069	ENSPMAG00000005657	rtcb	100	73.069	Petromyzon_marinus
WBGene00008877	rtcb-1	100	73.069	ENSPCIG00000009467	RTCB	100	73.069	Phascolarctos_cinereus
WBGene00008877	rtcb-1	100	74.653	ENSPFOG00000003058	rtcb	100	74.653	Poecilia_formosa
WBGene00008877	rtcb-1	100	74.653	ENSPLAG00000017663	rtcb	100	74.653	Poecilia_latipinna
WBGene00008877	rtcb-1	100	74.653	ENSPMEG00000006227	rtcb	100	74.653	Poecilia_mexicana
WBGene00008877	rtcb-1	100	75.050	ENSPREG00000018467	rtcb	100	75.050	Poecilia_reticulata
WBGene00008877	rtcb-1	100	73.069	ENSPPYG00000011752	RTCB	100	73.069	Pongo_abelii
WBGene00008877	rtcb-1	93	59.023	ENSPCAG00000013641	RTCB	100	59.023	Procavia_capensis
WBGene00008877	rtcb-1	100	73.069	ENSPCOG00000017243	RTCB	100	73.069	Propithecus_coquereli
WBGene00008877	rtcb-1	93	71.277	ENSPVAG00000002380	RTCB	100	71.277	Pteropus_vampyrus
WBGene00008877	rtcb-1	100	75.248	ENSPNYG00000022760	rtcb	100	75.248	Pundamilia_nyererei
WBGene00008877	rtcb-1	100	73.861	ENSPNAG00000009209	rtcb	100	73.861	Pygocentrus_nattereri
WBGene00008877	rtcb-1	100	73.267	ENSRNOG00000004813	Rtcb	100	73.267	Rattus_norvegicus
WBGene00008877	rtcb-1	100	66.272	ENSRBIG00000042090	RTCB	100	66.272	Rhinopithecus_bieti
WBGene00008877	rtcb-1	100	69.505	ENSSBOG00000020085	-	100	69.505	Saimiri_boliviensis_boliviensis
WBGene00008877	rtcb-1	94	74.895	ENSSHAG00000016277	RTCB	100	74.895	Sarcophilus_harrisii
WBGene00008877	rtcb-1	100	72.475	ENSSFOG00015011572	RTCB	100	72.475	Scleropages_formosus
WBGene00008877	rtcb-1	100	74.653	ENSSFOG00015000763	rtcb	100	74.653	Scleropages_formosus
WBGene00008877	rtcb-1	100	73.069	ENSSMAG00000005096	rtcb	100	73.069	Scophthalmus_maximus
WBGene00008877	rtcb-1	100	73.465	ENSSDUG00000012605	rtcb	100	73.465	Seriola_dumerili
WBGene00008877	rtcb-1	100	73.267	ENSSLDG00000019458	rtcb	100	73.267	Seriola_lalandi_dorsalis
WBGene00008877	rtcb-1	66	88.571	ENSSARG00000004799	-	70	88.571	Sorex_araneus
WBGene00008877	rtcb-1	100	72.871	ENSSPUG00000012814	RTCB	100	72.871	Sphenodon_punctatus
WBGene00008877	rtcb-1	100	74.851	ENSSPAG00000004623	rtcb	100	74.851	Stegastes_partitus
WBGene00008877	rtcb-1	100	73.069	ENSSSCG00000000158	RTCB	100	73.069	Sus_scrofa
WBGene00008877	rtcb-1	100	73.465	ENSTGUG00000010947	RTCB	99	73.465	Taeniopygia_guttata
WBGene00008877	rtcb-1	91	75.652	ENSTRUG00000009880	rtcb	100	75.652	Takifugu_rubripes
WBGene00008877	rtcb-1	100	73.861	ENSTNIG00000002484	rtcb	100	73.861	Tetraodon_nigroviridis
WBGene00008877	rtcb-1	100	62.772	ENSTBEG00000004418	RTCB	100	62.772	Tupaia_belangeri
WBGene00008877	rtcb-1	93	72.128	ENSTTRG00000006417	RTCB	100	72.128	Tursiops_truncatus
WBGene00008877	rtcb-1	100	73.069	ENSUAMG00000022792	RTCB	100	73.069	Ursus_americanus
WBGene00008877	rtcb-1	100	73.069	ENSUMAG00000017225	RTCB	100	73.069	Ursus_maritimus
WBGene00008877	rtcb-1	100	72.871	ENSVPAG00000005375	RTCB	100	72.871	Vicugna_pacos
WBGene00008877	rtcb-1	100	73.069	ENSVVUG00000023408	RTCB	100	75.430	Vulpes_vulpes
WBGene00008877	rtcb-1	100	72.673	ENSXETG00000011523	rtcb	100	72.673	Xenopus_tropicalis
WBGene00008877	rtcb-1	100	74.455	ENSXMAG00000002855	rtcb	100	74.455	Xiphophorus_maculatus