EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00009246 (Gene tree)
Gene ID: -
Gene Symbol: gfm-1
Alias: -
Full Name: Elongation factor G%2C mitochondrial
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 4603 bases
Position: chrII:13117483-13122085
Accession: Q9XV52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F29C12	GTP_EFTU	PF00009.27	2.4e-60	1	1
F29C12	GTP_EFTU	PF00009.27	2.4e-60	1	1
F29C12	GTP_EFTU_D2	PF03144.25	4.2e-13	1	1
F29C12	GTP_EFTU_D2	PF03144.25	4.2e-13	1	1
F29C12	EFG_IV	PF03764.18	7.1e-33	1	1
F29C12	EFG_IV	PF03764.18	7.1e-33	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F29C12.4.2	-	2478	NM_064386	F29C12.4.2	750 (aa)	NP_496787	Q9XV52
F29C12.4.1	-	2409	NM_064386	F29C12.4.1	750 (aa)	NP_496787	Q9XV52

Gene Model

Click here to download WBGene00009246's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00009246's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00009246	gfm-1	71	36.196	WBGene00001167	eef-2	73	36.196

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00009246	gfm-1	99	55.526	ENSG00000168827	GFM1	100	81.667	Homo_sapiens
WBGene00009246	gfm-1	89	57.036	ENSAPOG00000016489	gfm1	96	57.036	Acanthochromis_polyacanthus
WBGene00009246	gfm-1	99	55.689	ENSAMEG00000013542	GFM1	97	55.842	Ailuropoda_melanoleuca
WBGene00009246	gfm-1	95	53.436	ENSACIG00000014465	gfm1	91	53.704	Amphilophus_citrinellus
WBGene00009246	gfm-1	92	57.659	ENSAOCG00000006023	gfm1	93	57.659	Amphiprion_ocellaris
WBGene00009246	gfm-1	92	57.803	ENSAPEG00000024499	gfm1	96	57.659	Amphiprion_percula
WBGene00009246	gfm-1	95	56.742	ENSATEG00000013789	gfm1	94	57.061	Anabas_testudineus
WBGene00009246	gfm-1	95	55.961	ENSAPLG00000005022	GFM1	97	56.125	Anas_platyrhynchos
WBGene00009246	gfm-1	95	56.601	ENSACAG00000006829	GFM1	95	56.919	Anolis_carolinensis
WBGene00009246	gfm-1	99	55.246	ENSANAG00000035983	GFM1	97	55.391	Aotus_nancymaae
WBGene00009246	gfm-1	95	58.287	ENSACLG00000016586	gfm1	96	57.550	Astatotilapia_calliptera
WBGene00009246	gfm-1	99	55.855	ENSAMXG00000013435	gfm1	94	57.326	Astyanax_mexicanus
WBGene00009246	gfm-1	99	55.020	ENSBTAG00000027795	GFM1	97	55.163	Bos_taurus
WBGene00009246	gfm-1	99	55.288	ENSCJAG00000000363	GFM1	97	55.435	Callithrix_jacchus
WBGene00009246	gfm-1	98	56.114	ENSCAFG00000009006	GFM1	98	56.090	Canis_familiaris
WBGene00009246	gfm-1	99	55.615	ENSCAFG00020005878	GFM1	99	55.451	Canis_lupus_dingo
WBGene00009246	gfm-1	99	55.020	ENSCHIG00000015220	GFM1	97	55.163	Capra_hircus
WBGene00009246	gfm-1	99	55.930	ENSTSYG00000002013	GFM1	96	56.088	Carlito_syrichta
WBGene00009246	gfm-1	95	49.229	ENSCAPG00000005699	GFM1	95	49.288	Cavia_aperea
WBGene00009246	gfm-1	99	55.348	ENSCPOG00000001194	GFM1	97	55.495	Cavia_porcellus
WBGene00009246	gfm-1	99	54.920	ENSCCAG00000025561	GFM1	97	55.061	Cebus_capucinus
WBGene00009246	gfm-1	99	55.718	ENSCATG00000037622	GFM1	97	55.870	Cercocebus_atys
WBGene00009246	gfm-1	99	55.274	ENSCLAG00000002503	GFM1	97	55.420	Chinchilla_lanigera
WBGene00009246	gfm-1	99	55.585	ENSCSAG00000012162	GFM1	97	55.735	Chlorocebus_sabaeus
WBGene00009246	gfm-1	99	49.730	ENSCHOG00000004867	GFM1	94	50.833	Choloepus_hoffmanni
WBGene00009246	gfm-1	95	56.461	ENSCPBG00000018367	GFM1	94	56.633	Chrysemys_picta_bellii
WBGene00009246	gfm-1	95	51.393	ENSCING00000011960	-	90	52.594	Ciona_intestinalis
WBGene00009246	gfm-1	93	54.000	ENSCSAVG00000008514	-	98	52.722	Ciona_savignyi
WBGene00009246	gfm-1	99	55.526	ENSCANG00000031714	GFM1	97	55.601	Colobus_angolensis_palliatus
WBGene00009246	gfm-1	99	55.556	ENSCGRG00001022095	GFM1	97	55.707	Cricetulus_griseus_chok1gshd
WBGene00009246	gfm-1	99	55.556	ENSCGRG00000012043	GFM1	97	55.707	Cricetulus_griseus_crigri
WBGene00009246	gfm-1	93	53.352	ENSCSEG00000017088	gfm1	96	53.352	Cynoglossus_semilaevis
WBGene00009246	gfm-1	95	57.465	ENSCVAG00000004126	gfm1	98	56.491	Cyprinodon_variegatus
WBGene00009246	gfm-1	92	58.406	ENSDARG00000063624	gfm1	93	58.406	Danio_rerio
WBGene00009246	gfm-1	55	51.589	ENSDNOG00000016385	-	97	52.010	Dasypus_novemcinctus
WBGene00009246	gfm-1	99	56.150	ENSDORG00000014165	Gfm1	97	56.309	Dipodomys_ordii
WBGene00009246	gfm-1	95	59.379	FBgn0263133	mEFG1	94	59.291	Drosophila_melanogaster
WBGene00009246	gfm-1	99	51.265	ENSETEG00000019197	GFM1	97	51.351	Echinops_telfairi
WBGene00009246	gfm-1	88	53.414	ENSEBUG00000012794	gfm1	98	53.414	Eptatretus_burgeri
WBGene00009246	gfm-1	87	48.687	ENSEEUG00000000429	GFM1	88	48.687	Erinaceus_europaeus
WBGene00009246	gfm-1	95	57.584	ENSELUG00000014728	gfm1	94	57.775	Esox_lucius
WBGene00009246	gfm-1	99	55.481	ENSFCAG00000013291	GFM1	97	55.631	Felis_catus
WBGene00009246	gfm-1	90	55.407	ENSFALG00000007619	GFM1	98	55.572	Ficedula_albicollis
WBGene00009246	gfm-1	99	54.813	ENSFDAG00000016559	GFM1	97	54.953	Fukomys_damarensis
WBGene00009246	gfm-1	95	56.882	ENSFHEG00000006091	gfm1	94	57.204	Fundulus_heteroclitus
WBGene00009246	gfm-1	93	56.454	ENSGMOG00000010161	gfm1	97	56.454	Gadus_morhua
WBGene00009246	gfm-1	98	56.190	ENSGALG00000009634	GFM1	97	56.354	Gallus_gallus
WBGene00009246	gfm-1	95	56.742	ENSGAFG00000012527	gfm1	94	57.061	Gambusia_affinis
WBGene00009246	gfm-1	95	56.522	ENSGACG00000009864	gfm1	97	54.011	Gasterosteus_aculeatus
WBGene00009246	gfm-1	99	55.526	ENSGGOG00000003085	GFM1	97	55.601	Gorilla_gorilla
WBGene00009246	gfm-1	95	58.006	ENSHBUG00000002120	gfm1	94	58.345	Haplochromis_burtoni
WBGene00009246	gfm-1	99	54.947	ENSHGLG00000016855	GFM1	97	55.088	Heterocephalus_glaber_female
WBGene00009246	gfm-1	99	54.947	ENSHGLG00100013049	GFM1	97	55.088	Heterocephalus_glaber_male
WBGene00009246	gfm-1	95	56.197	ENSHCOG00000007638	gfm1	96	60.773	Hippocampus_comes
WBGene00009246	gfm-1	96	57.660	ENSIPUG00000005873	gfm1	93	58.621	Ictalurus_punctatus
WBGene00009246	gfm-1	99	54.717	ENSSTOG00000010150	GFM1	96	55.556	Ictidomys_tridecemlineatus
WBGene00009246	gfm-1	99	55.422	ENSJJAG00000016447	Gfm1	97	55.571	Jaculus_jaculus
WBGene00009246	gfm-1	92	58.960	ENSKMAG00000020768	gfm1	93	58.960	Kryptolebias_marmoratus
WBGene00009246	gfm-1	92	56.522	ENSLBEG00000021315	gfm1	98	56.522	Labrus_bergylta
WBGene00009246	gfm-1	95	55.478	ENSLACG00000012295	GFM1	95	55.635	Latimeria_chalumnae
WBGene00009246	gfm-1	95	53.212	ENSLOCG00000003778	gfm1	96	53.333	Lepisosteus_oculatus
WBGene00009246	gfm-1	97	55.785	ENSLAFG00000010945	GFM1	95	56.151	Loxodonta_africana
WBGene00009246	gfm-1	99	55.585	ENSMFAG00000035731	GFM1	97	55.735	Macaca_fascicularis
WBGene00009246	gfm-1	99	55.585	ENSMMUG00000004961	GFM1	97	55.735	Macaca_mulatta
WBGene00009246	gfm-1	99	55.319	ENSMNEG00000033245	GFM1	97	55.466	Macaca_nemestrina
WBGene00009246	gfm-1	95	55.961	ENSMLEG00000030908	GFM1	97	55.756	Mandrillus_leucophaeus
WBGene00009246	gfm-1	95	56.742	ENSMAMG00000011760	gfm1	94	57.061	Mastacembelus_armatus
WBGene00009246	gfm-1	95	58.287	ENSMZEG00005016639	gfm1	94	58.631	Maylandia_zebra
WBGene00009246	gfm-1	99	54.973	ENSMGAG00000010641	GFM1	97	55.116	Meleagris_gallopavo
WBGene00009246	gfm-1	95	57.163	ENSMAUG00000000611	Gfm1	93	57.347	Mesocricetus_auratus
WBGene00009246	gfm-1	95	57.504	ENSMICG00000049086	GFM1	93	57.692	Microcebus_murinus
WBGene00009246	gfm-1	95	56.601	ENSMOCG00000000465	Gfm1	93	56.776	Microtus_ochrogaster
WBGene00009246	gfm-1	99	56.680	ENSMMOG00000012538	gfm1	98	56.986	Mola_mola
WBGene00009246	gfm-1	95	56.882	ENSMODG00000015673	GFM1	94	57.061	Monodelphis_domestica
WBGene00009246	gfm-1	95	57.123	ENSMALG00000012508	gfm1	93	57.571	Monopterus_albus
WBGene00009246	gfm-1	99	54.886	MGP_CAROLIEiJ_G0025052	Gfm1	97	59.470	Mus_caroli
WBGene00009246	gfm-1	99	55.020	ENSMUSG00000027774	Gfm1	97	55.163	Mus_musculus
WBGene00009246	gfm-1	95	56.742	MGP_PahariEiJ_G0026495	Gfm1	92	62.475	Mus_pahari
WBGene00009246	gfm-1	99	55.020	MGP_SPRETEiJ_G0025994	Gfm1	97	59.659	Mus_spretus
WBGene00009246	gfm-1	99	55.615	ENSMPUG00000002859	GFM1	97	55.767	Mustela_putorius_furo
WBGene00009246	gfm-1	99	55.348	ENSMLUG00000000452	GFM1	97	55.495	Myotis_lucifugus
WBGene00009246	gfm-1	95	56.180	ENSNGAG00000012375	Gfm1	92	57.391	Nannospalax_galili
WBGene00009246	gfm-1	95	58.287	ENSNBRG00000004631	gfm1	96	58.631	Neolamprologus_brichardi
WBGene00009246	gfm-1	99	55.256	ENSNLEG00000004176	GFM1	97	55.061	Nomascus_leucogenys
WBGene00009246	gfm-1	90	52.155	ENSMEUG00000007784	GFM1	99	52.155	Notamacropus_eugenii
WBGene00009246	gfm-1	99	54.947	ENSOPRG00000009860	GFM1	96	55.632	Ochotona_princeps
WBGene00009246	gfm-1	99	55.348	ENSODEG00000004316	GFM1	97	55.495	Octodon_degus
WBGene00009246	gfm-1	95	58.287	ENSONIG00000003772	gfm1	94	58.631	Oreochromis_niloticus
WBGene00009246	gfm-1	99	55.615	ENSOCUG00000013561	GFM1	99	55.451	Oryctolagus_cuniculus
WBGene00009246	gfm-1	94	56.719	ENSORLG00000006487	gfm1	98	57.040	Oryzias_latipes
WBGene00009246	gfm-1	95	56.821	ENSORLG00020003362	gfm1	94	57.143	Oryzias_latipes_hni
WBGene00009246	gfm-1	95	56.681	ENSORLG00015005829	gfm1	94	57.000	Oryzias_latipes_hsok
WBGene00009246	gfm-1	95	56.821	ENSOMEG00000012894	gfm1	94	57.143	Oryzias_melastigma
WBGene00009246	gfm-1	99	55.615	ENSOGAG00000008298	GFM1	97	55.767	Otolemur_garnettii
WBGene00009246	gfm-1	95	56.224	ENSOARG00000002409	GFM1	97	56.392	Ovis_aries
WBGene00009246	gfm-1	99	55.526	ENSPPAG00000033881	GFM1	97	55.601	Pan_paniscus
WBGene00009246	gfm-1	99	55.481	ENSPPRG00000009281	GFM1	97	55.631	Panthera_pardus
WBGene00009246	gfm-1	99	55.615	ENSPTIG00000012416	GFM1	97	55.767	Panthera_tigris_altaica
WBGene00009246	gfm-1	99	55.526	ENSPTRG00000015570	GFM1	97	55.601	Pan_troglodytes
WBGene00009246	gfm-1	99	55.585	ENSPANG00000016512	GFM1	97	55.735	Papio_anubis
WBGene00009246	gfm-1	95	57.444	ENSPKIG00000004876	gfm1	94	57.632	Paramormyrops_kingsleyae
WBGene00009246	gfm-1	99	55.182	ENSPSIG00000012567	GFM1	97	55.328	Pelodiscus_sinensis
WBGene00009246	gfm-1	95	56.503	ENSPMGG00000014068	gfm1	97	56.818	Periophthalmus_magnuspinnatus
WBGene00009246	gfm-1	99	55.288	ENSPEMG00000008942	Gfm1	97	55.435	Peromyscus_maniculatus_bairdii
WBGene00009246	gfm-1	82	56.678	ENSPCIG00000020195	GFM1	96	56.678	Phascolarctos_cinereus
WBGene00009246	gfm-1	95	57.444	ENSPFOG00000011022	gfm1	94	57.775	Poecilia_formosa
WBGene00009246	gfm-1	95	57.444	ENSPLAG00000019585	gfm1	95	58.432	Poecilia_latipinna
WBGene00009246	gfm-1	95	57.584	ENSPMEG00000012376	gfm1	94	57.917	Poecilia_mexicana
WBGene00009246	gfm-1	95	57.303	ENSPREG00000001332	gfm1	89	57.632	Poecilia_reticulata
WBGene00009246	gfm-1	99	55.256	ENSPPYG00000014244	GFM1	97	55.331	Pongo_abelii
WBGene00009246	gfm-1	94	56.472	ENSPCAG00000008934	GFM1	98	56.647	Procavia_capensis
WBGene00009246	gfm-1	99	55.795	ENSPCOG00000022259	GFM1	99	55.720	Propithecus_coquereli
WBGene00009246	gfm-1	99	55.214	ENSPVAG00000013605	GFM1	97	55.360	Pteropus_vampyrus
WBGene00009246	gfm-1	95	58.006	ENSPNYG00000006037	gfm1	95	58.345	Pundamilia_nyererei
WBGene00009246	gfm-1	99	55.780	ENSPNAG00000001237	gfm1	98	56.071	Pygocentrus_nattereri
WBGene00009246	gfm-1	99	55.020	ENSRNOG00000012873	Gfm1	97	55.163	Rattus_norvegicus
WBGene00009246	gfm-1	99	55.526	ENSRBIG00000031363	GFM1	97	55.601	Rhinopithecus_bieti
WBGene00009246	gfm-1	99	55.526	ENSRROG00000031081	GFM1	97	55.601	Rhinopithecus_roxellana
WBGene00009246	gfm-1	92	51.006	YLR069C	-	90	51.006	Saccharomyces_cerevisiae
WBGene00009246	gfm-1	99	55.186	ENSSBOG00000023252	GFM1	98	54.727	Saimiri_boliviensis_boliviensis
WBGene00009246	gfm-1	95	56.039	ENSSHAG00000017772	GFM1	94	56.205	Sarcophilus_harrisii
WBGene00009246	gfm-1	95	56.276	ENSSFOG00015003117	gfm1	96	56.205	Scleropages_formosus
WBGene00009246	gfm-1	92	57.514	ENSSMAG00000013221	gfm1	93	57.514	Scophthalmus_maximus
WBGene00009246	gfm-1	95	57.444	ENSSDUG00000018665	gfm1	94	57.775	Seriola_dumerili
WBGene00009246	gfm-1	95	57.444	ENSSLDG00000020606	gfm1	94	57.775	Seriola_lalandi_dorsalis
WBGene00009246	gfm-1	95	55.882	ENSSPUG00000018686	GFM1	97	55.882	Sphenodon_punctatus
WBGene00009246	gfm-1	95	57.444	ENSSPAG00000008800	gfm1	94	57.775	Stegastes_partitus
WBGene00009246	gfm-1	99	55.422	ENSSSCG00000025651	GFM1	96	55.571	Sus_scrofa
WBGene00009246	gfm-1	95	57.584	ENSTRUG00000009244	gfm1	94	57.917	Takifugu_rubripes
WBGene00009246	gfm-1	95	58.427	ENSTNIG00000007729	gfm1	94	58.773	Tetraodon_nigroviridis
WBGene00009246	gfm-1	90	49.704	ENSTBEG00000017404	GFM1	88	49.774	Tupaia_belangeri
WBGene00009246	gfm-1	99	54.752	ENSTTRG00000001735	GFM1	96	55.027	Tursiops_truncatus
WBGene00009246	gfm-1	99	55.214	ENSUAMG00000026381	GFM1	97	55.360	Ursus_americanus
WBGene00009246	gfm-1	99	55.214	ENSUMAG00000011268	GFM1	97	55.360	Ursus_maritimus
WBGene00009246	gfm-1	99	52.878	ENSVPAG00000009444	GFM1	97	52.989	Vicugna_pacos
WBGene00009246	gfm-1	95	57.083	ENSVVUG00000020091	GFM1	98	56.090	Vulpes_vulpes
WBGene00009246	gfm-1	95	57.303	ENSXETG00000032551	GFM1	93	57.489	Xenopus_tropicalis
WBGene00009246	gfm-1	95	57.163	ENSXMAG00000000261	gfm1	94	57.489	Xiphophorus_maculatus