EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00010230 (Gene tree)
Gene ID: -
Gene Symbol: rpac-19
Alias: -
Full Name: Probable DNA-directed RNA polymerases I and III subunit RPAC2
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 672 bases
Position: chrIII:9629246-9629917
Accession: P34476
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F58A4	RNA_pol_L_2	PF13656.6	1.5e-25	1	1
F58A4	RNA_pol_L_2	PF13656.6	1.5e-25	1	1
F58A4	RNA_pol_L	PF01193.24	3.2e-08	1	1
F58A4	RNA_pol_L	PF01193.24	3.2e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F58A4.9.2	-	545	NM_066731	F58A4.9.2	144 (aa)	NP_499132	P34476
F58A4.9.1	-	574	NM_066731	F58A4.9.1	144 (aa)	NP_499132	P34476

Gene Model

Click here to download WBGene00010230's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00010230's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00010230	rpac-19	58	39.326	WBGene00012187	rpb-11	91	32.432

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00010230	rpac-19	57	37.805	ENSG00000186184	POLR1D	71	37.805	Homo_sapiens
WBGene00010230	rpac-19	59	36.471	ENSAPOG00000021882	polr1d	75	38.750	Acanthochromis_polyacanthus
WBGene00010230	rpac-19	57	37.805	ENSAMEG00000019095	POLR1D	66	37.805	Ailuropoda_melanoleuca
WBGene00010230	rpac-19	57	37.805	ENSACIG00000013328	polr1d	71	37.805	Amphilophus_citrinellus
WBGene00010230	rpac-19	56	38.750	ENSAOCG00000018500	polr1d	70	38.750	Amphiprion_ocellaris
WBGene00010230	rpac-19	56	38.750	ENSAPEG00000009489	polr1d	82	38.710	Amphiprion_percula
WBGene00010230	rpac-19	56	35.000	ENSATEG00000019322	polr1d	71	35.000	Anabas_testudineus
WBGene00010230	rpac-19	61	43.182	ENSACAG00000015753	POLR1D	76	43.182	Anolis_carolinensis
WBGene00010230	rpac-19	57	37.805	ENSANAG00000024486	POLR1D	62	37.805	Aotus_nancymaae
WBGene00010230	rpac-19	57	37.805	ENSACLG00000023805	polr1d	73	37.805	Astatotilapia_calliptera
WBGene00010230	rpac-19	60	39.080	ENSAMXG00000036118	polr1d	57	46.154	Astyanax_mexicanus
WBGene00010230	rpac-19	57	37.805	ENSBTAG00000033252	-	62	37.805	Bos_taurus
WBGene00010230	rpac-19	57	37.805	ENSBTAG00000008642	POLR1D	62	37.805	Bos_taurus
WBGene00010230	rpac-19	57	37.805	ENSCJAG00000044669	POLR1D	62	37.805	Callithrix_jacchus
WBGene00010230	rpac-19	57	37.805	ENSCAFG00000006755	POLR1D	62	37.805	Canis_familiaris
WBGene00010230	rpac-19	57	37.805	ENSCHIG00000021910	POLR1D	62	37.805	Capra_hircus
WBGene00010230	rpac-19	57	36.585	ENSTSYG00000026817	-	62	36.585	Carlito_syrichta
WBGene00010230	rpac-19	57	37.805	ENSCCAG00000021349	-	62	37.805	Cebus_capucinus
WBGene00010230	rpac-19	57	37.805	ENSCATG00000030710	-	62	37.805	Cercocebus_atys
WBGene00010230	rpac-19	57	37.805	ENSCLAG00000017623	POLR1D	66	37.805	Chinchilla_lanigera
WBGene00010230	rpac-19	56	40.000	ENSCPBG00000004719	POLR1D	79	40.000	Chrysemys_picta_bellii
WBGene00010230	rpac-19	57	37.805	ENSCANG00000028632	-	62	37.805	Colobus_angolensis_palliatus
WBGene00010230	rpac-19	57	35.366	ENSCANG00000037694	-	62	35.366	Colobus_angolensis_palliatus
WBGene00010230	rpac-19	57	39.024	ENSCGRG00001021251	Polr1d	62	39.024	Cricetulus_griseus_chok1gshd
WBGene00010230	rpac-19	57	39.024	ENSCGRG00000011639	Polr1d	62	39.024	Cricetulus_griseus_crigri
WBGene00010230	rpac-19	56	36.250	ENSCSEG00000018268	polr1d	68	36.250	Cynoglossus_semilaevis
WBGene00010230	rpac-19	56	40.000	ENSCVAG00000018527	polr1d	70	40.000	Cyprinodon_variegatus
WBGene00010230	rpac-19	61	38.043	ENSDARG00000037570	polr1d	82	38.043	Danio_rerio
WBGene00010230	rpac-19	57	36.585	ENSDNOG00000046247	-	61	36.585	Dasypus_novemcinctus
WBGene00010230	rpac-19	57	39.024	ENSDNOG00000043676	-	62	39.024	Dasypus_novemcinctus
WBGene00010230	rpac-19	57	39.024	ENSDORG00000029155	Polr1d	62	39.024	Dipodomys_ordii
WBGene00010230	rpac-19	57	37.805	ENSETEG00000012797	POLR1D	66	37.805	Echinops_telfairi
WBGene00010230	rpac-19	58	35.714	ENSEBUG00000011748	polr1d	58	35.714	Eptatretus_burgeri
WBGene00010230	rpac-19	57	37.805	ENSEASG00005022487	POLR1D	64	37.805	Equus_asinus_asinus
WBGene00010230	rpac-19	57	37.805	ENSEEUG00000013144	POLR1D	66	37.805	Erinaceus_europaeus
WBGene00010230	rpac-19	61	34.091	ENSELUG00000005105	rpac2	77	34.091	Esox_lucius
WBGene00010230	rpac-19	57	37.805	ENSFCAG00000030162	POLR1D	62	37.805	Felis_catus
WBGene00010230	rpac-19	61	32.955	ENSFALG00000011463	POLR1D	87	32.955	Ficedula_albicollis
WBGene00010230	rpac-19	57	36.585	ENSFDAG00000004463	POLR1D	62	36.585	Fukomys_damarensis
WBGene00010230	rpac-19	56	38.750	ENSFHEG00000015410	polr1d	70	38.750	Fundulus_heteroclitus
WBGene00010230	rpac-19	61	35.484	ENSGAFG00000001693	polr1d	70	38.750	Gambusia_affinis
WBGene00010230	rpac-19	61	33.696	ENSGACG00000018585	polr1d	78	33.696	Gasterosteus_aculeatus
WBGene00010230	rpac-19	61	37.500	ENSGAGG00000008503	POLR1D	77	37.500	Gopherus_agassizii
WBGene00010230	rpac-19	57	37.805	ENSGGOG00000004235	POLR1D	62	37.805	Gorilla_gorilla
WBGene00010230	rpac-19	55	38.554	ENSHBUG00000002111	polr1d	70	37.500	Haplochromis_burtoni
WBGene00010230	rpac-19	57	36.585	ENSHGLG00000003202	POLR1D	62	36.585	Heterocephalus_glaber_female
WBGene00010230	rpac-19	57	36.585	ENSHGLG00100009393	POLR1D	62	36.585	Heterocephalus_glaber_male
WBGene00010230	rpac-19	56	41.250	ENSHCOG00000003258	polr1d	70	41.250	Hippocampus_comes
WBGene00010230	rpac-19	56	41.250	ENSIPUG00000014810	polr1d	70	41.250	Ictalurus_punctatus
WBGene00010230	rpac-19	57	37.805	ENSSTOG00000013877	POLR1D	62	37.805	Ictidomys_tridecemlineatus
WBGene00010230	rpac-19	57	39.024	ENSJJAG00000022671	-	68	39.024	Jaculus_jaculus
WBGene00010230	rpac-19	65	36.170	ENSKMAG00000015256	polr1d	81	36.170	Kryptolebias_marmoratus
WBGene00010230	rpac-19	56	35.000	ENSLBEG00000015919	polr1d	70	35.000	Labrus_bergylta
WBGene00010230	rpac-19	58	39.286	ENSLACG00000006810	POLR1D	73	37.931	Latimeria_chalumnae
WBGene00010230	rpac-19	57	39.024	ENSLAFG00000032290	POLR1D	62	39.024	Loxodonta_africana
WBGene00010230	rpac-19	57	37.805	ENSMFAG00000045264	POLR1D	64	37.805	Macaca_fascicularis
WBGene00010230	rpac-19	57	37.805	ENSMMUG00000020386	POLR1D	71	37.805	Macaca_mulatta
WBGene00010230	rpac-19	57	37.805	ENSMNEG00000008630	-	62	37.805	Macaca_nemestrina
WBGene00010230	rpac-19	57	37.805	ENSMLEG00000041048	-	62	37.805	Mandrillus_leucophaeus
WBGene00010230	rpac-19	58	35.714	ENSMAMG00000014834	polr1d	79	35.714	Mastacembelus_armatus
WBGene00010230	rpac-19	57	37.805	ENSMZEG00005006638	polr1d	73	37.805	Maylandia_zebra
WBGene00010230	rpac-19	56	36.250	ENSMGAG00000005322	POLR1D	73	36.250	Meleagris_gallopavo
WBGene00010230	rpac-19	57	39.024	ENSMAUG00000001946	Polr1d	62	39.024	Mesocricetus_auratus
WBGene00010230	rpac-19	57	37.805	ENSMICG00000016883	-	62	37.805	Microcebus_murinus
WBGene00010230	rpac-19	60	31.034	ENSMICG00000007349	-	64	31.034	Microcebus_murinus
WBGene00010230	rpac-19	57	39.024	ENSMOCG00000021288	Polr1d	62	39.024	Microtus_ochrogaster
WBGene00010230	rpac-19	56	40.000	ENSMMOG00000009605	polr1d	70	40.000	Mola_mola
WBGene00010230	rpac-19	57	41.463	ENSMODG00000023881	POLR1D	72	41.463	Monodelphis_domestica
WBGene00010230	rpac-19	56	37.500	ENSMALG00000010652	polr1d	70	37.500	Monopterus_albus
WBGene00010230	rpac-19	57	39.024	MGP_CAROLIEiJ_G0028034	Polr1d	62	39.024	Mus_caroli
WBGene00010230	rpac-19	57	39.024	ENSMUSG00000029642	Polr1d	62	39.024	Mus_musculus
WBGene00010230	rpac-19	57	39.024	MGP_PahariEiJ_G0024600	Polr1d	62	39.024	Mus_pahari
WBGene00010230	rpac-19	57	37.805	MGP_SPRETEiJ_G0029032	Polr1d	62	37.805	Mus_spretus
WBGene00010230	rpac-19	56	37.500	ENSMLUG00000027169	-	61	37.500	Myotis_lucifugus
WBGene00010230	rpac-19	54	35.897	ENSMLUG00000004118	-	59	35.897	Myotis_lucifugus
WBGene00010230	rpac-19	57	39.024	ENSNGAG00000006014	Polr1d	71	39.024	Nannospalax_galili
WBGene00010230	rpac-19	56	37.500	ENSNBRG00000020327	polr1d	70	37.500	Neolamprologus_brichardi
WBGene00010230	rpac-19	57	37.805	ENSNLEG00000000358	POLR1D	62	37.805	Nomascus_leucogenys
WBGene00010230	rpac-19	57	37.805	ENSODEG00000005294	-	62	37.805	Octodon_degus
WBGene00010230	rpac-19	69	34.343	ENSOANG00000008708	-	87	34.343	Ornithorhynchus_anatinus
WBGene00010230	rpac-19	57	37.805	ENSOCUG00000015706	POLR1D	50	37.805	Oryctolagus_cuniculus
WBGene00010230	rpac-19	65	36.170	ENSORLG00000010257	polr1d	81	36.170	Oryzias_latipes
WBGene00010230	rpac-19	65	36.170	ENSORLG00020000533	polr1d	62	36.170	Oryzias_latipes_hni
WBGene00010230	rpac-19	65	37.234	ENSORLG00015013267	polr1d	61	37.234	Oryzias_latipes_hsok
WBGene00010230	rpac-19	53	39.474	ENSOMEG00000014912	polr1d	59	38.636	Oryzias_melastigma
WBGene00010230	rpac-19	57	36.585	ENSOGAG00000014601	POLR1D	62	36.585	Otolemur_garnettii
WBGene00010230	rpac-19	57	37.805	ENSOARG00000017005	POLR1D	63	37.805	Ovis_aries
WBGene00010230	rpac-19	57	37.805	ENSPPAG00000028138	POLR1D	62	37.805	Pan_paniscus
WBGene00010230	rpac-19	57	37.805	ENSPPRG00000003381	POLR1D	62	37.805	Panthera_pardus
WBGene00010230	rpac-19	57	37.805	ENSPTIG00000018137	POLR1D	62	37.805	Panthera_tigris_altaica
WBGene00010230	rpac-19	57	37.805	ENSPTRG00000005734	POLR1D	62	37.805	Pan_troglodytes
WBGene00010230	rpac-19	57	37.805	ENSPANG00000020259	-	62	37.805	Papio_anubis
WBGene00010230	rpac-19	61	33.696	ENSPKIG00000021891	polr1d	62	33.696	Paramormyrops_kingsleyae
WBGene00010230	rpac-19	56	41.250	ENSPSIG00000011822	POLR1D	62	41.250	Pelodiscus_sinensis
WBGene00010230	rpac-19	56	34.568	ENSPMGG00000012998	POLR1D	60	34.568	Periophthalmus_magnuspinnatus
WBGene00010230	rpac-19	56	37.647	ENSPMGG00000010359	polr1d	74	37.647	Periophthalmus_magnuspinnatus
WBGene00010230	rpac-19	57	36.585	ENSPEMG00000006336	-	63	36.585	Peromyscus_maniculatus_bairdii
WBGene00010230	rpac-19	57	37.805	ENSPMAG00000004228	polr1d	69	37.805	Petromyzon_marinus
WBGene00010230	rpac-19	57	41.463	ENSPCIG00000001673	POLR1D	72	41.463	Phascolarctos_cinereus
WBGene00010230	rpac-19	56	38.750	ENSPFOG00000023343	polr1d	83	40.278	Poecilia_formosa
WBGene00010230	rpac-19	56	38.750	ENSPLAG00000009675	polr1d	70	38.750	Poecilia_latipinna
WBGene00010230	rpac-19	56	38.750	ENSPMEG00000004628	polr1d	70	38.750	Poecilia_mexicana
WBGene00010230	rpac-19	56	38.750	ENSPREG00000022032	polr1d	70	38.750	Poecilia_reticulata
WBGene00010230	rpac-19	57	36.585	ENSPCOG00000028175	POLR1D	62	36.585	Propithecus_coquereli
WBGene00010230	rpac-19	56	37.500	ENSPNYG00000000107	polr1d	70	37.500	Pundamilia_nyererei
WBGene00010230	rpac-19	56	40.000	ENSPNAG00000001512	polr1d	70	37.349	Pygocentrus_nattereri
WBGene00010230	rpac-19	57	36.585	ENSRBIG00000000336	-	62	36.585	Rhinopithecus_bieti
WBGene00010230	rpac-19	57	37.805	ENSRBIG00000036378	-	62	37.805	Rhinopithecus_bieti
WBGene00010230	rpac-19	57	37.805	ENSRROG00000042232	-	62	37.805	Rhinopithecus_roxellana
WBGene00010230	rpac-19	57	36.585	ENSRROG00000026751	-	62	36.585	Rhinopithecus_roxellana
WBGene00010230	rpac-19	57	37.805	ENSSBOG00000028482	-	62	37.805	Saimiri_boliviensis_boliviensis
WBGene00010230	rpac-19	57	41.463	ENSSHAG00000001190	POLR1D	64	41.463	Sarcophilus_harrisii
WBGene00010230	rpac-19	56	37.500	ENSSFOG00015011375	polr1d	70	37.500	Scleropages_formosus
WBGene00010230	rpac-19	56	35.000	ENSSMAG00000011861	polr1d	70	35.000	Scophthalmus_maximus
WBGene00010230	rpac-19	56	35.000	ENSSDUG00000011930	polr1d	70	35.000	Seriola_dumerili
WBGene00010230	rpac-19	57	35.366	ENSSLDG00000023871	polr1d	69	35.366	Seriola_lalandi_dorsalis
WBGene00010230	rpac-19	57	37.805	ENSSARG00000007840	POLR1D	62	37.805	Sorex_araneus
WBGene00010230	rpac-19	61	38.636	ENSSPUG00000005786	POLR1D	75	38.636	Sphenodon_punctatus
WBGene00010230	rpac-19	56	36.250	ENSSPAG00000011764	polr1d	70	36.250	Stegastes_partitus
WBGene00010230	rpac-19	57	37.805	ENSSSCG00000009310	POLR1D	62	37.805	Sus_scrofa
WBGene00010230	rpac-19	61	34.091	ENSTGUG00000005450	POLR1D	92	34.091	Taeniopygia_guttata
WBGene00010230	rpac-19	56	41.250	ENSTRUG00000019741	polr1d	70	41.250	Takifugu_rubripes
WBGene00010230	rpac-19	57	37.805	ENSTBEG00000007006	POLR1D	66	37.805	Tupaia_belangeri
WBGene00010230	rpac-19	57	37.805	ENSUAMG00000011413	POLR1D	62	37.805	Ursus_americanus
WBGene00010230	rpac-19	57	37.805	ENSUMAG00000016968	POLR1D	64	37.805	Ursus_maritimus
WBGene00010230	rpac-19	57	37.805	ENSVVUG00000009216	POLR1D	62	37.805	Vulpes_vulpes
WBGene00010230	rpac-19	56	38.750	ENSXCOG00000011731	polr1d	62	38.750	Xiphophorus_couchianus
WBGene00010230	rpac-19	56	40.000	ENSXMAG00000017538	polr1d	62	40.000	Xiphophorus_maculatus