EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00011580 (Gene tree)
Gene ID: -
Gene Symbol: ddx-19
Alias: -
Full Name: DEAD boX helicase homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 4773 bases
Position: chrII:8884901-8889673
Accession: B7WN81
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
T07D4	DEAD	PF00270.29	1.4e-30	1	1
T07D4	DEAD	PF00270.29	1.4e-30	1	1
T07D4	DEAD	PF00270.29	2.3e-30	1	1
T07D4	DEAD	PF00270.29	2.3e-30	1	1
T07D4	DEAD	PF00270.29	2.5e-30	1	1
T07D4	DEAD	PF00270.29	5.9e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
T07D4.4c	-	2209	NM_063492	T07D4.4c	613 (aa)	NP_495893	O62372
T07D4.4b	-	2291	NM_001267257	T07D4.4b	638 (aa)	NP_001254186	B7WN80
T07D4.4a	-	3436	NM_063490	T07D4.4a	1022 (aa)	NP_495891	Q22308
T07D4.4e.2	-	1863	NM_001306538	T07D4.4e.2	497 (aa)	NP_001293467	B7WN81
T07D4.4e.1	-	1924	NM_001306538	T07D4.4e.1	497 (aa)	NP_001293467	B7WN81
T07D4.4d	-	2191	NM_001267257	T07D4.4d	607 (aa)	NP_001254186	B7WN80

Gene Model

Click here to download WBGene00011580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00011580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00011580	ddx-19	80	34.663	WBGene00018007	F33D11.10	94	34.663
WBGene00011580	ddx-19	75	30.239	WBGene00000479	cgh-1	81	30.607
WBGene00011580	ddx-19	75	30.585	WBGene00012059	T26G10.1	75	30.051
WBGene00011580	ddx-19	80	34.663	WBGene00022029	Y65B4A.6	99	33.887
WBGene00011580	ddx-19	80	37.065	WBGene00002083	inf-1	93	37.065

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00011580	ddx-19	86	45.688	FBgn0024804	Dbp80	95	43.382	Drosophila_melanogaster
WBGene00011580	ddx-19	84	42.721	YOR046C	DBP5	83	42.721	Saccharomyces_cerevisiae