EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00011605 (Gene tree)
Gene ID: -
Gene Symbol: sftb-1
Alias: -
Full Name: Splicing Factor ThreeB (3b) Subunit homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 5486 bases
Position: chrIII:4263785-4269270
Accession: G5EEQ8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
T08A11	SF3b1	PF08920.10	1.2e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
T08A11.2	-	4270	NM_065452	T08A11.2	1322 (aa)	NP_497853	G5EEQ8

Gene Model

Click here to download WBGene00011605's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00011605's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00011605	sftb-1	98	66.516	ENSG00000115524	SF3B1	92	85.068	Homo_sapiens
WBGene00011605	sftb-1	97	65.465	ENSAPOG00000011894	sf3b1	98	65.243	Acanthochromis_polyacanthus
WBGene00011605	sftb-1	98	66.466	ENSAMEG00000013809	SF3B1	98	66.390	Ailuropoda_melanoleuca
WBGene00011605	sftb-1	99	64.614	ENSACIG00000020910	sf3b1	95	64.540	Amphilophus_citrinellus
WBGene00011605	sftb-1	97	65.442	ENSAOCG00000004478	sf3b1	98	65.292	Amphiprion_ocellaris
WBGene00011605	sftb-1	97	65.442	ENSAPEG00000012937	sf3b1	98	65.292	Amphiprion_percula
WBGene00011605	sftb-1	97	65.367	ENSATEG00000020435	sf3b1	98	65.217	Anabas_testudineus
WBGene00011605	sftb-1	98	66.717	ENSAPLG00000003993	SF3B1	98	66.616	Anas_platyrhynchos
WBGene00011605	sftb-1	98	66.465	ENSACAG00000009612	SF3B1	98	66.465	Anolis_carolinensis
WBGene00011605	sftb-1	98	66.516	ENSANAG00000021577	SF3B1	99	70.318	Aotus_nancymaae
WBGene00011605	sftb-1	99	64.628	ENSACLG00000023470	sf3b1	99	64.554	Astatotilapia_calliptera
WBGene00011605	sftb-1	99	64.307	ENSAMXG00000002219	sf3b1	99	64.307	Astyanax_mexicanus
WBGene00011605	sftb-1	98	66.516	ENSBTAG00000008915	SF3B1	98	66.440	Bos_taurus
WBGene00011605	sftb-1	98	66.516	ENSCJAG00000003902	SF3B1	98	66.440	Callithrix_jacchus
WBGene00011605	sftb-1	98	66.516	ENSCAFG00000010826	SF3B1	98	66.440	Canis_familiaris
WBGene00011605	sftb-1	98	66.516	ENSCAFG00020004750	SF3B1	98	66.440	Canis_lupus_dingo
WBGene00011605	sftb-1	98	66.516	ENSCHIG00000015226	SF3B1	99	66.440	Capra_hircus
WBGene00011605	sftb-1	98	66.440	ENSTSYG00000009214	SF3B1	98	66.365	Carlito_syrichta
WBGene00011605	sftb-1	98	66.516	ENSCAPG00000006547	SF3B1	98	66.440	Cavia_aperea
WBGene00011605	sftb-1	98	66.516	ENSCPOG00000009353	SF3B1	99	66.440	Cavia_porcellus
WBGene00011605	sftb-1	98	66.516	ENSCCAG00000020506	SF3B1	98	66.440	Cebus_capucinus
WBGene00011605	sftb-1	98	66.516	ENSCATG00000035735	SF3B1	98	66.440	Cercocebus_atys
WBGene00011605	sftb-1	98	66.516	ENSCLAG00000014767	SF3B1	98	66.440	Chinchilla_lanigera
WBGene00011605	sftb-1	98	66.516	ENSCSAG00000011505	SF3B1	98	66.440	Chlorocebus_sabaeus
WBGene00011605	sftb-1	73	73.165	ENSCHOG00000009860	SF3B1	71	73.056	Choloepus_hoffmanni
WBGene00011605	sftb-1	98	66.616	ENSCPBG00000021902	SF3B1	99	70.008	Chrysemys_picta_bellii
WBGene00011605	sftb-1	68	62.314	ENSCING00000002558	-	100	62.420	Ciona_intestinalis
WBGene00011605	sftb-1	99	64.749	ENSCSAVG00000002559	-	100	65.351	Ciona_savignyi
WBGene00011605	sftb-1	98	66.516	ENSCANG00000029415	SF3B1	98	66.440	Colobus_angolensis_palliatus
WBGene00011605	sftb-1	98	66.516	ENSCGRG00001016990	Sf3b1	98	66.440	Cricetulus_griseus_chok1gshd
WBGene00011605	sftb-1	98	66.516	ENSCGRG00000005301	Sf3b1	98	66.440	Cricetulus_griseus_crigri
WBGene00011605	sftb-1	97	62.199	ENSCSEG00000003860	sf3b1	98	62.199	Cynoglossus_semilaevis
WBGene00011605	sftb-1	95	64.927	ENSCVAG00000003680	sf3b1	98	64.774	Cyprinodon_variegatus
WBGene00011605	sftb-1	98	65.693	ENSDARG00000056138	sf3b1	98	66.067	Danio_rerio
WBGene00011605	sftb-1	98	66.466	ENSDNOG00000011754	SF3B1	98	66.390	Dasypus_novemcinctus
WBGene00011605	sftb-1	93	68.815	ENSDORG00000002399	Sf3b1	97	68.735	Dipodomys_ordii
WBGene00011605	sftb-1	97	67.494	FBgn0031266	Sf3b1	97	67.543	Drosophila_melanogaster
WBGene00011605	sftb-1	82	64.986	ENSETEG00000009188	SF3B1	99	64.896	Echinops_telfairi
WBGene00011605	sftb-1	99	64.671	ENSEBUG00000004325	sf3b1	100	68.692	Eptatretus_burgeri
WBGene00011605	sftb-1	98	66.516	ENSEASG00005020159	SF3B1	96	66.440	Equus_asinus_asinus
WBGene00011605	sftb-1	98	66.516	ENSECAG00000021657	SF3B1	96	66.440	Equus_caballus
WBGene00011605	sftb-1	75	88.688	ENSEEUG00000000836	SF3B1	73	88.688	Erinaceus_europaeus
WBGene00011605	sftb-1	98	64.929	ENSELUG00000005977	sf3b1	96	64.929	Esox_lucius
WBGene00011605	sftb-1	98	66.516	ENSFCAG00000005038	SF3B1	98	66.440	Felis_catus
WBGene00011605	sftb-1	98	66.717	ENSFALG00000004281	SF3B1	98	66.616	Ficedula_albicollis
WBGene00011605	sftb-1	98	66.516	ENSFDAG00000017510	SF3B1	98	66.440	Fukomys_damarensis
WBGene00011605	sftb-1	99	64.837	ENSFHEG00000014333	sf3b1	99	64.763	Fundulus_heteroclitus
WBGene00011605	sftb-1	99	64.238	ENSGMOG00000006773	sf3b1	99	64.413	Gadus_morhua
WBGene00011605	sftb-1	98	66.717	ENSGALG00000008038	SF3B1	98	66.642	Gallus_gallus
WBGene00011605	sftb-1	98	64.841	ENSGAFG00000000704	sf3b1	99	64.693	Gambusia_affinis
WBGene00011605	sftb-1	99	64.789	ENSGACG00000008839	sf3b1	99	64.863	Gasterosteus_aculeatus
WBGene00011605	sftb-1	98	66.616	ENSGAGG00000017478	SF3B1	97	66.616	Gopherus_agassizii
WBGene00011605	sftb-1	98	65.145	ENSGGOG00000009264	SF3B1	98	65.221	Gorilla_gorilla
WBGene00011605	sftb-1	99	64.602	ENSHBUG00000007705	sf3b1	99	64.528	Haplochromis_burtoni
WBGene00011605	sftb-1	98	66.516	ENSHGLG00000008285	-	98	66.440	Heterocephalus_glaber_female
WBGene00011605	sftb-1	98	64.857	ENSHGLG00100005535	-	98	64.781	Heterocephalus_glaber_male
WBGene00011605	sftb-1	98	64.885	ENSHCOG00000016775	sf3b1	98	64.736	Hippocampus_comes
WBGene00011605	sftb-1	99	65.214	ENSIPUG00000013171	sf3b1	99	65.214	Ictalurus_punctatus
WBGene00011605	sftb-1	98	66.516	ENSSTOG00000011034	SF3B1	96	68.735	Ictidomys_tridecemlineatus
WBGene00011605	sftb-1	98	66.516	ENSJJAG00000010903	Sf3b1	99	66.440	Jaculus_jaculus
WBGene00011605	sftb-1	99	64.265	ENSKMAG00000004009	sf3b1	99	64.044	Kryptolebias_marmoratus
WBGene00011605	sftb-1	99	64.736	ENSLBEG00000022208	sf3b1	99	64.885	Labrus_bergylta
WBGene00011605	sftb-1	98	63.177	ENSLACG00000014832	SF3B1	98	63.001	Latimeria_chalumnae
WBGene00011605	sftb-1	97	66.167	ENSLOCG00000003899	sf3b1	98	66.317	Lepisosteus_oculatus
WBGene00011605	sftb-1	98	66.516	ENSLAFG00000001956	SF3B1	98	66.440	Loxodonta_africana
WBGene00011605	sftb-1	98	66.516	ENSMMUG00000022430	SF3B1	98	66.415	Macaca_mulatta
WBGene00011605	sftb-1	98	66.516	ENSMNEG00000042333	SF3B1	99	70.318	Macaca_nemestrina
WBGene00011605	sftb-1	94	67.037	ENSMLEG00000026141	SF3B1	99	66.484	Mandrillus_leucophaeus
WBGene00011605	sftb-1	97	65.758	ENSMAMG00000010241	sf3b1	98	65.606	Mastacembelus_armatus
WBGene00011605	sftb-1	99	64.628	ENSMZEG00005021254	sf3b1	99	64.554	Maylandia_zebra
WBGene00011605	sftb-1	98	66.793	ENSMGAG00000007017	SF3B1	99	66.717	Meleagris_gallopavo
WBGene00011605	sftb-1	98	62.066	ENSMAUG00000009071	Sf3b1	98	63.396	Mesocricetus_auratus
WBGene00011605	sftb-1	99	65.556	ENSMICG00000013879	SF3B1	100	65.481	Microcebus_murinus
WBGene00011605	sftb-1	98	62.896	ENSMOCG00000000455	Sf3b1	98	62.792	Microtus_ochrogaster
WBGene00011605	sftb-1	81	64.446	ENSMMOG00000000475	sf3b1	97	64.266	Mola_mola
WBGene00011605	sftb-1	98	66.465	ENSMODG00000012275	SF3B1	98	66.390	Monodelphis_domestica
WBGene00011605	sftb-1	97	65.442	ENSMALG00000017211	sf3b1	98	65.292	Monopterus_albus
WBGene00011605	sftb-1	98	66.516	MGP_CAROLIEiJ_G0014141	Sf3b1	98	66.440	Mus_caroli
WBGene00011605	sftb-1	98	66.516	ENSMUSG00000025982	Sf3b1	98	66.440	Mus_musculus
WBGene00011605	sftb-1	98	66.516	MGP_SPRETEiJ_G0014947	Sf3b1	98	66.440	Mus_spretus
WBGene00011605	sftb-1	98	66.516	ENSMPUG00000007799	SF3B1	98	66.440	Mustela_putorius_furo
WBGene00011605	sftb-1	98	65.611	ENSMLUG00000000840	SF3B1	98	65.535	Myotis_lucifugus
WBGene00011605	sftb-1	99	65.678	ENSNGAG00000021884	-	99	65.579	Nannospalax_galili
WBGene00011605	sftb-1	89	68.503	ENSNBRG00000015816	sf3b1	91	68.257	Neolamprologus_brichardi
WBGene00011605	sftb-1	98	66.516	ENSNLEG00000006861	SF3B1	98	66.440	Nomascus_leucogenys
WBGene00011605	sftb-1	64	86.686	ENSMEUG00000015848	-	66	86.686	Notamacropus_eugenii
WBGene00011605	sftb-1	92	63.108	ENSOPRG00000008596	SF3B1	92	62.948	Ochotona_princeps
WBGene00011605	sftb-1	98	66.516	ENSODEG00000011153	-	98	66.440	Octodon_degus
WBGene00011605	sftb-1	99	64.628	ENSONIG00000013758	sf3b1	99	64.554	Oreochromis_niloticus
WBGene00011605	sftb-1	82	72.818	ENSOCUG00000012722	-	94	72.727	Oryctolagus_cuniculus
WBGene00011605	sftb-1	97	65.419	ENSORLG00000020219	sf3b1	98	65.344	Oryzias_latipes
WBGene00011605	sftb-1	97	65.419	ENSORLG00020001746	sf3b1	98	65.344	Oryzias_latipes_hni
WBGene00011605	sftb-1	62	58.488	ENSORLG00015001759	sf3b1	95	58.372	Oryzias_latipes_hsok
WBGene00011605	sftb-1	97	65.295	ENSOMEG00000019231	sf3b1	98	65.172	Oryzias_melastigma
WBGene00011605	sftb-1	98	66.516	ENSOARG00000015374	SF3B1	98	66.440	Ovis_aries
WBGene00011605	sftb-1	98	66.516	ENSPPAG00000035007	SF3B1	98	66.440	Pan_paniscus
WBGene00011605	sftb-1	98	66.516	ENSPPRG00000009090	SF3B1	98	66.440	Panthera_pardus
WBGene00011605	sftb-1	98	66.516	ENSPTIG00000021557	SF3B1	98	66.440	Panthera_tigris_altaica
WBGene00011605	sftb-1	98	63.278	ENSPTRG00000012771	SF3B1	98	63.202	Pan_troglodytes
WBGene00011605	sftb-1	98	66.516	ENSPANG00000013417	SF3B1	98	66.440	Papio_anubis
WBGene00011605	sftb-1	99	64.676	ENSPKIG00000000784	sf3b1	99	64.823	Paramormyrops_kingsleyae
WBGene00011605	sftb-1	98	66.566	ENSPSIG00000017222	SF3B1	97	66.566	Pelodiscus_sinensis
WBGene00011605	sftb-1	89	65.551	ENSPMGG00000004330	sf3b1	97	65.633	Periophthalmus_magnuspinnatus
WBGene00011605	sftb-1	98	66.516	ENSPEMG00000010699	Sf3b1	99	66.440	Peromyscus_maniculatus_bairdii
WBGene00011605	sftb-1	99	65.464	ENSPMAG00000001311	sf3b1	99	65.660	Petromyzon_marinus
WBGene00011605	sftb-1	98	66.465	ENSPCIG00000010642	SF3B1	98	66.390	Phascolarctos_cinereus
WBGene00011605	sftb-1	99	64.602	ENSPFOG00000000073	sf3b1	99	64.454	Poecilia_formosa
WBGene00011605	sftb-1	99	64.576	ENSPLAG00000002293	sf3b1	99	64.428	Poecilia_latipinna
WBGene00011605	sftb-1	99	64.649	ENSPMEG00000000446	sf3b1	97	64.502	Poecilia_mexicana
WBGene00011605	sftb-1	99	64.797	ENSPREG00000019652	sf3b1	99	64.649	Poecilia_reticulata
WBGene00011605	sftb-1	82	73.636	ENSPPYG00000013044	SF3B1	93	73.545	Pongo_abelii
WBGene00011605	sftb-1	98	66.365	ENSPCAG00000009292	SF3B1	98	66.290	Procavia_capensis
WBGene00011605	sftb-1	98	66.440	ENSPCOG00000024074	SF3B1	98	66.365	Propithecus_coquereli
WBGene00011605	sftb-1	98	66.516	ENSPVAG00000008302	SF3B1	98	66.440	Pteropus_vampyrus
WBGene00011605	sftb-1	99	64.628	ENSPNYG00000014939	sf3b1	99	64.554	Pundamilia_nyererei
WBGene00011605	sftb-1	97	65.318	ENSPNAG00000008288	sf3b1	98	65.318	Pygocentrus_nattereri
WBGene00011605	sftb-1	98	66.516	ENSRNOG00000013516	Sf3b1	98	66.440	Rattus_norvegicus
WBGene00011605	sftb-1	98	64.178	ENSRBIG00000026096	SF3B1	98	64.103	Rhinopithecus_bieti
WBGene00011605	sftb-1	98	66.516	ENSRROG00000031308	SF3B1	98	66.440	Rhinopithecus_roxellana
WBGene00011605	sftb-1	98	66.516	ENSSBOG00000020080	SF3B1	98	66.440	Saimiri_boliviensis_boliviensis
WBGene00011605	sftb-1	98	66.541	ENSSHAG00000017564	SF3B1	98	66.466	Sarcophilus_harrisii
WBGene00011605	sftb-1	99	65.390	ENSSFOG00015021535	sf3b1	99	65.364	Scleropages_formosus
WBGene00011605	sftb-1	97	64.697	ENSSMAG00000013977	sf3b1	97	64.622	Scophthalmus_maximus
WBGene00011605	sftb-1	97	65.566	ENSSDUG00000017422	sf3b1	98	65.416	Seriola_dumerili
WBGene00011605	sftb-1	97	65.566	ENSSLDG00000019495	sf3b1	98	65.416	Seriola_lalandi_dorsalis
WBGene00011605	sftb-1	75	80.071	ENSSARG00000007016	SF3B1	75	80.071	Sorex_araneus
WBGene00011605	sftb-1	98	66.239	ENSSPUG00000000410	SF3B1	98	66.239	Sphenodon_punctatus
WBGene00011605	sftb-1	99	64.697	ENSSPAG00000010451	sf3b1	97	64.549	Stegastes_partitus
WBGene00011605	sftb-1	89	70.401	ENSSSCG00000016075	SF3B1	99	70.318	Sus_scrofa
WBGene00011605	sftb-1	98	66.717	ENSTGUG00000010553	SF3B1	98	66.642	Taeniopygia_guttata
WBGene00011605	sftb-1	97	65.393	ENSTRUG00000015534	sf3b1	98	65.318	Takifugu_rubripes
WBGene00011605	sftb-1	74	74.898	ENSTBEG00000008714	SF3B1	89	74.797	Tupaia_belangeri
WBGene00011605	sftb-1	84	78.003	ENSTTRG00000003414	SF3B1	85	78.003	Tursiops_truncatus
WBGene00011605	sftb-1	93	64.992	ENSUAMG00000018506	SF3B1	95	82.973	Ursus_americanus
WBGene00011605	sftb-1	98	66.516	ENSUMAG00000020945	SF3B1	98	66.440	Ursus_maritimus
WBGene00011605	sftb-1	87	78.638	ENSVPAG00000005798	SF3B1	88	78.535	Vicugna_pacos
WBGene00011605	sftb-1	98	66.516	ENSVVUG00000025948	SF3B1	93	66.440	Vulpes_vulpes
WBGene00011605	sftb-1	99	64.959	ENSXETG00000013339	sf3b1	99	64.736	Xenopus_tropicalis
WBGene00011605	sftb-1	99	63.946	ENSXCOG00000018086	sf3b1	99	63.794	Xiphophorus_couchianus
WBGene00011605	sftb-1	99	64.723	ENSXMAG00000007369	sf3b1	99	64.649	Xiphophorus_maculatus