EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00012187 (Gene tree)
Gene ID: -
Gene Symbol: rpb-11
Alias: -
Full Name: Probable DNA-directed RNA polymerase II subunit RPB11
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 564 bases
Position: chrII:14060061-14060624
Accession: Q9XVH6
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W01G7	RNA_pol_L_2	PF13656.6	9.3e-27	1	1
W01G7	RNA_pol_L_2	PF13656.6	9.3e-27	1	1
W01G7	RNA_pol_L	PF01193.24	3.4e-09	1	1
W01G7	RNA_pol_L	PF01193.24	3.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W01G7.3.2	-	437	NM_064541	W01G7.3.2	122 (aa)	NP_496942	Q9XVH6
W01G7.3.1	-	461	NM_064541	W01G7.3.1	122 (aa)	NP_496942	Q9XVH6

Gene Model

Click here to download WBGene00012187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012187's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00012187	rpb-11	91	32.432	WBGene00010230	rpac-19	58	39.326

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012187	rpb-11	89	70.000	ENSG00000005075	POLR2J	94	70.000	Homo_sapiens
WBGene00012187	rpb-11	89	66.667	ENSG00000228049	POLR2J2	94	66.667	Homo_sapiens
WBGene00012187	rpb-11	89	68.182	ENSAPOG00000019538	polr2j	94	68.182	Acanthochromis_polyacanthus
WBGene00012187	rpb-11	91	66.964	ENSAMEG00000015480	-	88	66.964	Ailuropoda_melanoleuca
WBGene00012187	rpb-11	60	72.973	ENSACIG00000014549	POLR2J2	66	72.973	Amphilophus_citrinellus
WBGene00012187	rpb-11	89	67.273	ENSAOCG00000006937	polr2j	94	67.273	Amphiprion_ocellaris
WBGene00012187	rpb-11	89	68.182	ENSAPEG00000021761	polr2j	94	68.182	Amphiprion_percula
WBGene00012187	rpb-11	89	68.182	ENSATEG00000013312	-	94	68.182	Anabas_testudineus
WBGene00012187	rpb-11	89	68.182	ENSATEG00000009731	polr2j	94	68.182	Anabas_testudineus
WBGene00012187	rpb-11	77	68.085	ENSAPLG00000003744	-	93	68.085	Anas_platyrhynchos
WBGene00012187	rpb-11	89	65.455	ENSACAG00000000251	POLR2J	94	65.455	Anolis_carolinensis
WBGene00012187	rpb-11	89	68.182	ENSACLG00000014564	polr2j	94	68.182	Astatotilapia_calliptera
WBGene00012187	rpb-11	89	68.182	ENSAMXG00000007517	polr2j	94	68.182	Astyanax_mexicanus
WBGene00012187	rpb-11	67	47.561	ENSBTAG00000048046	-	65	47.561	Bos_taurus
WBGene00012187	rpb-11	89	70.000	ENSCJAG00000016203	-	94	70.000	Callithrix_jacchus
WBGene00012187	rpb-11	89	70.000	ENSCAFG00000013683	-	94	70.000	Canis_familiaris
WBGene00012187	rpb-11	74	71.111	ENSTSYG00000029243	-	77	71.111	Carlito_syrichta
WBGene00012187	rpb-11	89	70.000	ENSCPOG00000001401	-	94	70.000	Cavia_porcellus
WBGene00012187	rpb-11	89	50.459	ENSCATG00000016595	-	88	59.524	Cercocebus_atys
WBGene00012187	rpb-11	89	70.000	ENSCLAG00000005238	-	94	70.000	Chinchilla_lanigera
WBGene00012187	rpb-11	89	70.000	ENSCSAG00000018092	-	94	70.000	Chlorocebus_sabaeus
WBGene00012187	rpb-11	93	65.217	ENSCING00000020531	-	98	65.217	Ciona_intestinalis
WBGene00012187	rpb-11	93	63.478	ENSCSAVG00000006948	-	98	63.478	Ciona_savignyi
WBGene00012187	rpb-11	89	70.000	ENSCGRG00001012814	Polr2j	94	70.000	Cricetulus_griseus_chok1gshd
WBGene00012187	rpb-11	89	56.364	ENSCGRG00000008433	Polr2j	94	56.364	Cricetulus_griseus_crigri
WBGene00012187	rpb-11	89	68.182	ENSCSEG00000020352	polr2j	94	68.182	Cynoglossus_semilaevis
WBGene00012187	rpb-11	89	68.182	ENSCVAG00000014267	polr2j	94	68.182	Cyprinodon_variegatus
WBGene00012187	rpb-11	89	67.273	ENSDARG00000035146	polr2j	94	67.273	Danio_rerio
WBGene00012187	rpb-11	89	70.000	ENSDORG00000005934	Polr2j	94	70.000	Dipodomys_ordii
WBGene00012187	rpb-11	95	64.957	FBgn0032634	Rpb11	100	64.957	Drosophila_melanogaster
WBGene00012187	rpb-11	90	45.455	ENSEBUG00000016100	polr2j	93	45.455	Eptatretus_burgeri
WBGene00012187	rpb-11	89	70.000	ENSEASG00005016864	-	94	70.000	Equus_asinus_asinus
WBGene00012187	rpb-11	89	68.182	ENSELUG00000012822	polr2j	94	68.182	Esox_lucius
WBGene00012187	rpb-11	89	70.000	ENSFCAG00000000377	-	94	70.000	Felis_catus
WBGene00012187	rpb-11	89	70.000	ENSFALG00000009523	POLR2J	94	70.000	Ficedula_albicollis
WBGene00012187	rpb-11	89	70.000	ENSFDAG00000010507	-	94	70.000	Fukomys_damarensis
WBGene00012187	rpb-11	89	68.182	ENSFHEG00000006625	polr2j	94	68.182	Fundulus_heteroclitus
WBGene00012187	rpb-11	89	67.273	ENSGMOG00000018207	polr2j	94	67.273	Gadus_morhua
WBGene00012187	rpb-11	89	70.000	ENSGALG00000030808	-	94	70.000	Gallus_gallus
WBGene00012187	rpb-11	89	68.182	ENSGAFG00000019555	polr2j	94	68.182	Gambusia_affinis
WBGene00012187	rpb-11	89	68.182	ENSGACG00000003310	polr2j	94	68.182	Gasterosteus_aculeatus
WBGene00012187	rpb-11	76	68.817	ENSGAGG00000018304	-	85	68.817	Gopherus_agassizii
WBGene00012187	rpb-11	76	66.667	ENSGGOG00000004519	-	74	66.667	Gorilla_gorilla
WBGene00012187	rpb-11	89	68.182	ENSHBUG00000008467	polr2j	94	68.182	Haplochromis_burtoni
WBGene00012187	rpb-11	89	70.000	ENSHGLG00000013598	POLR2J	100	66.964	Heterocephalus_glaber_female
WBGene00012187	rpb-11	89	70.000	ENSHGLG00100011242	POLR2J	100	66.964	Heterocephalus_glaber_male
WBGene00012187	rpb-11	89	67.273	ENSHCOG00000014827	polr2j	64	67.273	Hippocampus_comes
WBGene00012187	rpb-11	89	68.182	ENSIPUG00000023960	polr2j	94	68.182	Ictalurus_punctatus
WBGene00012187	rpb-11	89	70.000	ENSSTOG00000006377	POLR2J	94	70.476	Ictidomys_tridecemlineatus
WBGene00012187	rpb-11	89	70.000	ENSJJAG00000013854	-	94	70.000	Jaculus_jaculus
WBGene00012187	rpb-11	94	65.517	ENSJJAG00000018834	-	98	66.087	Jaculus_jaculus
WBGene00012187	rpb-11	89	68.182	ENSKMAG00000014581	polr2j	74	68.182	Kryptolebias_marmoratus
WBGene00012187	rpb-11	89	68.182	ENSLBEG00000005885	polr2j	94	68.182	Labrus_bergylta
WBGene00012187	rpb-11	89	68.182	ENSLOCG00000001885	polr2j	83	68.182	Lepisosteus_oculatus
WBGene00012187	rpb-11	89	70.000	ENSLAFG00000021507	-	94	70.000	Loxodonta_africana
WBGene00012187	rpb-11	84	71.154	ENSMMUG00000012019	POLR2J	80	71.154	Macaca_mulatta
WBGene00012187	rpb-11	89	68.182	ENSMAMG00000009374	polr2j	94	68.182	Mastacembelus_armatus
WBGene00012187	rpb-11	89	68.182	ENSMZEG00005011932	polr2j	94	68.182	Maylandia_zebra
WBGene00012187	rpb-11	89	70.000	ENSMGAG00000003534	POLR2J	94	70.000	Meleagris_gallopavo
WBGene00012187	rpb-11	89	70.000	ENSMAUG00000013049	Polr2j	94	70.000	Mesocricetus_auratus
WBGene00012187	rpb-11	74	70.000	ENSMICG00000026811	-	91	70.000	Microcebus_murinus
WBGene00012187	rpb-11	89	70.000	ENSMOCG00000001294	Polr2j	94	70.000	Microtus_ochrogaster
WBGene00012187	rpb-11	89	67.273	ENSMMOG00000013265	polr2j	94	67.273	Mola_mola
WBGene00012187	rpb-11	84	71.154	ENSMODG00000013617	-	81	71.154	Monodelphis_domestica
WBGene00012187	rpb-11	89	68.182	ENSMALG00000020749	polr2j	94	68.182	Monopterus_albus
WBGene00012187	rpb-11	89	70.000	MGP_CAROLIEiJ_G0027851	Polr2j	95	70.476	Mus_caroli
WBGene00012187	rpb-11	89	70.000	ENSMUSG00000039771	Polr2j	94	71.154	Mus_musculus
WBGene00012187	rpb-11	89	70.000	MGP_PahariEiJ_G0024434	Polr2j	94	70.000	Mus_pahari
WBGene00012187	rpb-11	89	70.000	MGP_SPRETEiJ_G0028853	Polr2j	94	71.154	Mus_spretus
WBGene00012187	rpb-11	89	70.000	ENSMLUG00000010467	POLR2J	94	70.000	Myotis_lucifugus
WBGene00012187	rpb-11	89	70.000	ENSNGAG00000023412	Polr2j	93	71.154	Nannospalax_galili
WBGene00012187	rpb-11	62	72.368	ENSNBRG00000006580	polr2j	59	72.368	Neolamprologus_brichardi
WBGene00012187	rpb-11	89	70.000	ENSODEG00000015648	-	94	70.476	Octodon_degus
WBGene00012187	rpb-11	89	56.364	ENSODEG00000008559	-	94	56.364	Octodon_degus
WBGene00012187	rpb-11	89	68.182	ENSONIG00000000259	polr2j	94	68.182	Oreochromis_niloticus
WBGene00012187	rpb-11	89	67.273	ENSOANG00000020912	POLR2J	94	67.273	Ornithorhynchus_anatinus
WBGene00012187	rpb-11	84	71.154	ENSOCUG00000023609	POLR2J	82	71.154	Oryctolagus_cuniculus
WBGene00012187	rpb-11	89	68.182	ENSORLG00000029046	polr2j	78	68.182	Oryzias_latipes
WBGene00012187	rpb-11	89	68.182	ENSORLG00020007625	polr2j	78	68.182	Oryzias_latipes_hni
WBGene00012187	rpb-11	89	68.182	ENSORLG00015003457	polr2j	78	68.182	Oryzias_latipes_hsok
WBGene00012187	rpb-11	89	68.182	ENSOMEG00000002097	polr2j	94	68.182	Oryzias_melastigma
WBGene00012187	rpb-11	85	53.774	ENSOGAG00000008250	-	83	53.774	Otolemur_garnettii
WBGene00012187	rpb-11	89	70.000	ENSOARG00000014204	-	92	70.000	Ovis_aries
WBGene00012187	rpb-11	89	70.000	ENSPPRG00000012439	-	94	70.000	Panthera_pardus
WBGene00012187	rpb-11	87	64.151	ENSPTIG00000018714	-	87	71.111	Panthera_tigris_altaica
WBGene00012187	rpb-11	76	68.817	ENSPSIG00000010173	-	93	68.817	Pelodiscus_sinensis
WBGene00012187	rpb-11	89	68.182	ENSPMGG00000021256	polr2j	94	68.182	Periophthalmus_magnuspinnatus
WBGene00012187	rpb-11	89	70.000	ENSPEMG00000015733	Polr2j	94	70.000	Peromyscus_maniculatus_bairdii
WBGene00012187	rpb-11	89	70.000	ENSPCIG00000009026	-	94	70.000	Phascolarctos_cinereus
WBGene00012187	rpb-11	89	68.182	ENSPFOG00000012001	polr2j	93	68.182	Poecilia_formosa
WBGene00012187	rpb-11	89	68.182	ENSPLAG00000014075	polr2j	94	68.182	Poecilia_latipinna
WBGene00012187	rpb-11	89	68.182	ENSPMEG00000020585	polr2j	94	68.182	Poecilia_mexicana
WBGene00012187	rpb-11	89	68.182	ENSPREG00000015255	polr2j	94	68.182	Poecilia_reticulata
WBGene00012187	rpb-11	97	64.228	ENSPCOG00000024573	-	94	70.000	Propithecus_coquereli
WBGene00012187	rpb-11	85	70.476	ENSPVAG00000017770	-	60	70.476	Pteropus_vampyrus
WBGene00012187	rpb-11	89	68.182	ENSPNYG00000014832	polr2j	94	68.182	Pundamilia_nyererei
WBGene00012187	rpb-11	89	67.273	ENSPNAG00000016595	polr2j	94	67.273	Pygocentrus_nattereri
WBGene00012187	rpb-11	89	70.000	ENSRNOG00000001430	Polr2j	94	70.000	Rattus_norvegicus
WBGene00012187	rpb-11	89	70.000	ENSSBOG00000025579	-	94	70.000	Saimiri_boliviensis_boliviensis
WBGene00012187	rpb-11	51	69.355	ENSSHAG00000010443	-	73	69.355	Sarcophilus_harrisii
WBGene00012187	rpb-11	89	66.055	ENSSFOG00015003371	polr2j	83	66.055	Scleropages_formosus
WBGene00012187	rpb-11	89	68.182	ENSSMAG00000006729	polr2j	94	68.182	Scophthalmus_maximus
WBGene00012187	rpb-11	89	68.182	ENSSDUG00000018490	polr2j	94	68.182	Seriola_dumerili
WBGene00012187	rpb-11	89	68.182	ENSSLDG00000022354	polr2j	94	68.182	Seriola_lalandi_dorsalis
WBGene00012187	rpb-11	89	70.000	ENSSPUG00000010802	-	94	70.000	Sphenodon_punctatus
WBGene00012187	rpb-11	89	68.182	ENSSPAG00000021953	polr2j	94	68.182	Stegastes_partitus
WBGene00012187	rpb-11	89	63.303	ENSSSCG00000003703	-	78	63.303	Sus_scrofa
WBGene00012187	rpb-11	89	70.000	ENSSSCG00000007688	-	94	70.000	Sus_scrofa
WBGene00012187	rpb-11	76	68.817	ENSTGUG00000004501	-	93	68.817	Taeniopygia_guttata
WBGene00012187	rpb-11	51	69.355	ENSTGUG00000004510	-	90	69.355	Taeniopygia_guttata
WBGene00012187	rpb-11	89	68.182	ENSTRUG00000020842	polr2j	94	68.182	Takifugu_rubripes
WBGene00012187	rpb-11	89	67.273	ENSTNIG00000002994	polr2j	94	67.273	Tetraodon_nigroviridis
WBGene00012187	rpb-11	85	58.095	ENSTBEG00000005797	-	69	58.095	Tupaia_belangeri
WBGene00012187	rpb-11	89	70.000	ENSUAMG00000011310	-	94	70.000	Ursus_americanus
WBGene00012187	rpb-11	89	70.000	ENSUMAG00000012594	-	94	70.000	Ursus_maritimus
WBGene00012187	rpb-11	89	69.091	ENSXETG00000001108	polr2j	94	69.091	Xenopus_tropicalis
WBGene00012187	rpb-11	89	68.182	ENSXMAG00000012422	polr2j	94	68.182	Xiphophorus_maculatus