EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00012245 (Gene tree)
Gene ID: -
Gene Symbol: W04D2.6
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 5526 bases
Position: chrV:12498213-12503738
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W04D2	RRM_1	PF00076.22	2.6e-09	1	1
W04D2	RRM_1	PF00076.22	2.6e-09	1	1
W04D2	RRM_1	PF00076.22	2.6e-09	1	1
W04D2	RRM_1	PF00076.22	2.7e-09	1	1
W04D2	PWI	PF01480.17	1.9e-15	1	1
W04D2	PWI	PF01480.17	3.5e-15	1	1
W04D2	PWI	PF01480.17	3.5e-15	1	1
W04D2	PWI	PF01480.17	3.5e-15	1	1
W04D2	PWI	PF01480.17	3.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W04D2.6c.2	-	2351	NM_001269498	W04D2.6c.2	707 (aa)	NP_001256427	H2L2D0
W04D2.6b	-	1722	NM_073733	W04D2.6b	499 (aa)	NP_506134	Q8I4F3
W04D2.6c.1	-	2393	NM_001269498	W04D2.6c.1	707 (aa)	NP_001256427	H2L2D0
W04D2.6a	-	2378	NM_073732	W04D2.6a	705 (aa)	NP_506133	G5EE97
W04D2.6c.3	-	2384	NM_001269498	W04D2.6c.3	707 (aa)	NP_001256427	H2L2D0

Gene Model

Click here to download WBGene00012245's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012245's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012245	W04D2.6	90	33.745	ENSAPOG00000017757	rbm25a	75	40.252	Acanthochromis_polyacanthus
WBGene00012245	W04D2.6	81	32.527	ENSACIG00000019482	rbm25a	54	33.929	Amphilophus_citrinellus
WBGene00012245	W04D2.6	86	31.447	ENSACIG00000014178	rbm25b	54	30.973	Amphilophus_citrinellus
WBGene00012245	W04D2.6	81	34.491	ENSAOCG00000013695	rbm25a	53	35.035	Amphiprion_ocellaris
WBGene00012245	W04D2.6	85	34.222	ENSAOCG00000019308	rbm25b	54	34.703	Amphiprion_ocellaris
WBGene00012245	W04D2.6	81	34.491	ENSAPEG00000007514	rbm25a	55	33.921	Amphiprion_percula
WBGene00012245	W04D2.6	86	33.983	ENSAPEG00000009666	rbm25b	57	33.190	Amphiprion_percula
WBGene00012245	W04D2.6	86	33.125	ENSATEG00000020676	rbm25a	63	31.165	Anabas_testudineus
WBGene00012245	W04D2.6	86	33.766	ENSATEG00000017312	rbm25b	55	35.023	Anabas_testudineus
WBGene00012245	W04D2.6	90	32.645	ENSACLG00000027482	rbm25a	54	34.325	Astatotilapia_calliptera
WBGene00012245	W04D2.6	86	32.983	ENSACLG00000024359	rbm25b	55	34.956	Astatotilapia_calliptera
WBGene00012245	W04D2.6	56	47.788	ENSAMXG00000024525	rbm25b	75	39.106	Astyanax_mexicanus
WBGene00012245	W04D2.6	93	33.965	ENSCSAVG00000010097	-	59	33.005	Ciona_savignyi
WBGene00012245	W04D2.6	61	45.522	ENSCANG00000043874	RBM25	57	55.952	Colobus_angolensis_palliatus
WBGene00012245	W04D2.6	78	32.723	ENSCSEG00000009430	rbm25a	55	33.996	Cynoglossus_semilaevis
WBGene00012245	W04D2.6	86	34.216	ENSCSEG00000020737	rbm25b	71	42.657	Cynoglossus_semilaevis
WBGene00012245	W04D2.6	86	33.755	ENSCVAG00000003478	rbm25b	54	32.816	Cyprinodon_variegatus
WBGene00012245	W04D2.6	75	46.341	ENSCVAG00000005498	rbm25a	99	33.159	Cyprinodon_variegatus
WBGene00012245	W04D2.6	78	34.146	ENSDARG00000039266	rbm25a	95	48.684	Danio_rerio
WBGene00012245	W04D2.6	58	41.781	ENSELUG00000007730	rbm25b	55	32.533	Esox_lucius
WBGene00012245	W04D2.6	54	45.528	ENSFHEG00000005318	rbm25a	50	30.445	Fundulus_heteroclitus
WBGene00012245	W04D2.6	86	32.911	ENSFHEG00000003513	rbm25b	56	33.778	Fundulus_heteroclitus
WBGene00012245	W04D2.6	67	58.333	ENSGMOG00000014070	rbm25a	78	39.645	Gadus_morhua
WBGene00012245	W04D2.6	86	32.189	ENSGAFG00000018036	rbm25a	67	41.026	Gambusia_affinis
WBGene00012245	W04D2.6	86	31.602	ENSGAFG00000001092	rbm25b	51	32.168	Gambusia_affinis
WBGene00012245	W04D2.6	90	32.645	ENSHBUG00000016908	rbm25a	76	34.951	Haplochromis_burtoni
WBGene00012245	W04D2.6	86	32.983	ENSHBUG00000018499	rbm25b	55	34.956	Haplochromis_burtoni
WBGene00012245	W04D2.6	86	32.812	ENSHCOG00000000142	rbm25b	53	33.643	Hippocampus_comes
WBGene00012245	W04D2.6	91	30.879	ENSKMAG00000016242	rbm25a	55	33.489	Kryptolebias_marmoratus
WBGene00012245	W04D2.6	86	33.404	ENSLBEG00000010667	rbm25b	53	34.713	Labrus_bergylta
WBGene00012245	W04D2.6	57	33.411	ENSLACG00000011845	RBM25	62	48.182	Latimeria_chalumnae
WBGene00012245	W04D2.6	76	33.252	ENSMAMG00000000165	rbm25a	51	33.415	Mastacembelus_armatus
WBGene00012245	W04D2.6	90	32.645	ENSMZEG00005011183	rbm25a	66	58.333	Maylandia_zebra
WBGene00012245	W04D2.6	86	32.983	ENSMZEG00005001453	rbm25b	55	34.956	Maylandia_zebra
WBGene00012245	W04D2.6	86	33.040	ENSMMOG00000009065	rbm25a	53	33.793	Mola_mola
WBGene00012245	W04D2.6	70	34.509	ENSMALG00000020459	rbm25a	89	33.586	Monopterus_albus
WBGene00012245	W04D2.6	54	33.255	ENSNBRG00000003761	rbm25a	54	34.598	Neolamprologus_brichardi
WBGene00012245	W04D2.6	57	33.105	ENSOCUG00000013737	RBM25	58	55.952	Oryctolagus_cuniculus
WBGene00012245	W04D2.6	70	33.067	ENSORLG00000009958	rbm25a	99	33.159	Oryzias_latipes
WBGene00012245	W04D2.6	87	33.766	ENSORLG00020016422	rbm25b	54	33.406	Oryzias_latipes_hni
WBGene00012245	W04D2.6	64	42.177	ENSOMEG00000022138	rbm25a	74	41.935	Oryzias_melastigma
WBGene00012245	W04D2.6	86	33.747	ENSOMEG00000023172	rbm25b	71	43.357	Oryzias_melastigma
WBGene00012245	W04D2.6	78	34.389	ENSPKIG00000003203	rbm25b	54	33.108	Paramormyrops_kingsleyae
WBGene00012245	W04D2.6	78	31.873	ENSPMGG00000001791	rbm25a	99	31.678	Periophthalmus_magnuspinnatus
WBGene00012245	W04D2.6	86	34.232	ENSPMGG00000015740	rbm25b	56	34.945	Periophthalmus_magnuspinnatus
WBGene00012245	W04D2.6	86	32.833	ENSPLAG00000018338	rbm25a	67	58.333	Poecilia_latipinna
WBGene00012245	W04D2.6	86	32.833	ENSPMEG00000024470	rbm25a	67	58.333	Poecilia_mexicana
WBGene00012245	W04D2.6	81	32.805	ENSPREG00000009228	rbm25a	67	58.333	Poecilia_reticulata
WBGene00012245	W04D2.6	90	32.645	ENSPNYG00000022596	rbm25a	62	58.333	Pundamilia_nyererei
WBGene00012245	W04D2.6	57	46.610	ENSPNAG00000012024	rbm25b	74	40.828	Pygocentrus_nattereri
WBGene00012245	W04D2.6	78	32.420	ENSSFOG00015007093	rbm25	55	34.375	Scleropages_formosus
WBGene00012245	W04D2.6	71	40.107	ENSSMAG00000002520	rbm25b	66	55.952	Scophthalmus_maximus
WBGene00012245	W04D2.6	86	32.083	ENSSMAG00000009745	rbm25a	55	32.895	Scophthalmus_maximus
WBGene00012245	W04D2.6	81	33.114	ENSSDUG00000017984	rbm25a	55	34.298	Seriola_dumerili
WBGene00012245	W04D2.6	81	33.114	ENSSLDG00000010342	rbm25a	54	34.298	Seriola_lalandi_dorsalis
WBGene00012245	W04D2.6	81	32.340	ENSSPAG00000011114	rbm25a	55	33.261	Stegastes_partitus
WBGene00012245	W04D2.6	73	55.952	ENSSPAG00000016168	rbm25b	73	38.462	Stegastes_partitus
WBGene00012245	W04D2.6	85	31.702	ENSTRUG00000003076	rbm25a	57	32.889	Takifugu_rubripes
WBGene00012245	W04D2.6	84	34.157	ENSTRUG00000017964	rbm25b	55	34.607	Takifugu_rubripes
WBGene00012245	W04D2.6	70	32.461	ENSTNIG00000004673	rbm25a	99	34.121	Tetraodon_nigroviridis
WBGene00012245	W04D2.6	86	33.040	ENSTNIG00000012222	rbm25b	67	35.417	Tetraodon_nigroviridis
WBGene00012245	W04D2.6	88	32.427	ENSXCOG00000004043	RBM25	70	41.958	Xiphophorus_couchianus