EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00012342 (Gene tree)
Gene ID: -
Gene Symbol: mtr-4
Alias: -
Full Name: mRNA transport homolog 4
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 4927 bases
Position: chrIV:9825694-9830620
Accession: Q23223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W08D2	ResIII	PF04851.15	1.2e-05	1	1
W08D2	rRNA_proc-arch	PF13234.6	5.9e-57	1	1
W08D2	DEAD	PF00270.29	2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W08D2.7	-	3224	NM_069356	W08D2.7	1026 (aa)	NP_501757	Q23223

Gene Model

Click here to download WBGene00012342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00012342	mtr-4	75	44.118	WBGene00008502	skih-2	64	45.686

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012342	mtr-4	97	52.324	ENSG00000039123	MTREX	93	61.194	Homo_sapiens
WBGene00012342	mtr-4	91	52.754	ENSAPOG00000007814	mtrex	91	53.291	Acanthochromis_polyacanthus
WBGene00012342	mtr-4	94	53.450	ENSAMEG00000013856	MTREX	91	53.782	Ailuropoda_melanoleuca
WBGene00012342	mtr-4	91	53.518	ENSACIG00000015117	mtrex	94	53.503	Amphilophus_citrinellus
WBGene00012342	mtr-4	91	52.966	ENSAOCG00000011884	mtrex	91	53.503	Amphiprion_ocellaris
WBGene00012342	mtr-4	91	52.860	ENSAPEG00000019384	mtrex	91	53.397	Amphiprion_percula
WBGene00012342	mtr-4	91	53.879	ENSATEG00000015117	mtrex	91	54.091	Anabas_testudineus
WBGene00012342	mtr-4	95	53.122	ENSAPLG00000009694	MTREX	95	53.943	Anas_platyrhynchos
WBGene00012342	mtr-4	92	54.469	ENSACAG00000015200	MTREX	88	54.469	Anolis_carolinensis
WBGene00012342	mtr-4	94	53.251	ENSANAG00000023095	MTREX	93	53.628	Aotus_nancymaae
WBGene00012342	mtr-4	91	53.575	ENSACLG00000001921	mtrex	91	53.715	Astatotilapia_calliptera
WBGene00012342	mtr-4	86	52.974	ENSAMXG00000018751	mtrex	89	53.086	Astyanax_mexicanus
WBGene00012342	mtr-4	98	51.929	ENSBTAG00000010518	MTREX	91	53.733	Bos_taurus
WBGene00012342	mtr-4	94	53.251	ENSCJAG00000001773	MTREX	92	53.628	Callithrix_jacchus
WBGene00012342	mtr-4	94	53.196	ENSCAFG00000006818	MTREX	91	53.523	Canis_familiaris
WBGene00012342	mtr-4	94	53.196	ENSCAFG00020024352	MTREX	91	53.523	Canis_lupus_dingo
WBGene00012342	mtr-4	98	52.127	ENSCHIG00000024413	MTREX	91	53.733	Capra_hircus
WBGene00012342	mtr-4	90	58.268	ENSTSYG00000007389	MTREX	90	64.062	Carlito_syrichta
WBGene00012342	mtr-4	99	37.793	ENSCAPG00000008696	MTREX	94	40.190	Cavia_aperea
WBGene00012342	mtr-4	94	53.251	ENSCPOG00000009797	MTREX	91	53.628	Cavia_porcellus
WBGene00012342	mtr-4	94	53.251	ENSCCAG00000014177	MTREX	91	53.628	Cebus_capucinus
WBGene00012342	mtr-4	97	52.324	ENSCATG00000042153	MTREX	91	53.733	Cercocebus_atys
WBGene00012342	mtr-4	94	53.196	ENSCLAG00000006622	MTREX	91	53.628	Chinchilla_lanigera
WBGene00012342	mtr-4	95	51.308	ENSCSAG00000016445	MTREX	91	51.871	Chlorocebus_sabaeus
WBGene00012342	mtr-4	54	72.222	ENSCHOG00000010936	-	55	72.222	Choloepus_hoffmanni
WBGene00012342	mtr-4	96	53.030	ENSCPBG00000026551	MTREX	86	54.259	Chrysemys_picta_bellii
WBGene00012342	mtr-4	93	51.871	ENSCING00000003239	-	91	52.497	Ciona_intestinalis
WBGene00012342	mtr-4	93	51.603	ENSCSAVG00000009304	-	100	52.258	Ciona_savignyi
WBGene00012342	mtr-4	100	51.480	ENSCANG00000035770	MTREX	91	53.733	Colobus_angolensis_palliatus
WBGene00012342	mtr-4	95	53.055	ENSCGRG00001024680	Mtrex	91	53.733	Cricetulus_griseus_chok1gshd
WBGene00012342	mtr-4	95	53.055	ENSCGRG00000000307	Mtrex	91	53.733	Cricetulus_griseus_crigri
WBGene00012342	mtr-4	91	53.454	ENSCSEG00000018621	mtrex	92	52.356	Cynoglossus_semilaevis
WBGene00012342	mtr-4	91	54.091	ENSCVAG00000004556	mtrex	91	54.091	Cyprinodon_variegatus
WBGene00012342	mtr-4	91	54.189	ENSDARG00000013457	mtrex	91	54.189	Danio_rerio
WBGene00012342	mtr-4	97	52.087	ENSDNOG00000015375	MTREX	91	53.628	Dasypus_novemcinctus
WBGene00012342	mtr-4	94	53.044	ENSDORG00000006782	Mtrex	91	53.417	Dipodomys_ordii
WBGene00012342	mtr-4	100	48.448	FBgn0001986	Mtr4	90	51.572	Drosophila_melanogaster
WBGene00012342	mtr-4	72	53.558	ENSETEG00000000727	MTREX	72	53.558	Echinops_telfairi
WBGene00012342	mtr-4	92	53.368	ENSEBUG00000012869	mtrex	92	53.368	Eptatretus_burgeri
WBGene00012342	mtr-4	98	51.929	ENSEASG00005013270	MTREX	91	53.523	Equus_asinus_asinus
WBGene00012342	mtr-4	98	52.028	ENSECAG00000023723	MTREX	87	58.564	Equus_caballus
WBGene00012342	mtr-4	92	47.803	ENSEEUG00000000527	MTREX	91	47.961	Erinaceus_europaeus
WBGene00012342	mtr-4	91	53.700	ENSELUG00000004898	mtrex	99	54.017	Esox_lucius
WBGene00012342	mtr-4	100	51.098	ENSFCAG00000010575	MTREX	91	53.628	Felis_catus
WBGene00012342	mtr-4	92	54.250	ENSFALG00000010850	MTREX	92	54.250	Ficedula_albicollis
WBGene00012342	mtr-4	94	52.887	ENSFDAG00000011199	MTREX	91	53.312	Fukomys_damarensis
WBGene00012342	mtr-4	91	53.674	ENSFHEG00000023014	mtrex	91	53.781	Fundulus_heteroclitus
WBGene00012342	mtr-4	88	53.341	ENSGMOG00000014702	mtrex	91	53.560	Gadus_morhua
WBGene00012342	mtr-4	92	54.259	ENSGALG00000014709	MTREX	79	54.259	Gallus_gallus
WBGene00012342	mtr-4	91	53.994	ENSGAFG00000012425	mtrex	95	53.994	Gambusia_affinis
WBGene00012342	mtr-4	88	53.493	ENSGACG00000016260	mtrex	96	53.696	Gasterosteus_aculeatus
WBGene00012342	mtr-4	94	53.767	ENSGAGG00000020036	MTREX	92	54.259	Gopherus_agassizii
WBGene00012342	mtr-4	97	52.324	ENSGGOG00000001867	MTREX	91	53.733	Gorilla_gorilla
WBGene00012342	mtr-4	91	53.575	ENSHBUG00000006229	mtrex	91	53.715	Haplochromis_burtoni
WBGene00012342	mtr-4	96	52.520	ENSHGLG00000019445	SKIV2L2	91	53.628	Heterocephalus_glaber_female
WBGene00012342	mtr-4	96	52.520	ENSHGLG00100011833	SKIV2L2	91	53.628	Heterocephalus_glaber_male
WBGene00012342	mtr-4	92	51.923	ENSHCOG00000019995	mtrex	100	51.822	Hippocampus_comes
WBGene00012342	mtr-4	91	54.304	ENSIPUG00000024348	skiv2l2	91	54.410	Ictalurus_punctatus
WBGene00012342	mtr-4	95	52.953	ENSSTOG00000010802	MTREX	91	53.628	Ictidomys_tridecemlineatus
WBGene00012342	mtr-4	92	51.214	ENSJJAG00000020975	Mtrex	91	51.214	Jaculus_jaculus
WBGene00012342	mtr-4	95	52.449	ENSKMAG00000012642	mtrex	93	53.797	Kryptolebias_marmoratus
WBGene00012342	mtr-4	91	53.178	ENSLBEG00000019367	mtrex	97	53.291	Labrus_bergylta
WBGene00012342	mtr-4	99	51.988	ENSLACG00000009075	MTREX	92	54.469	Latimeria_chalumnae
WBGene00012342	mtr-4	91	54.362	ENSLOCG00000010186	mtrex	91	54.362	Lepisosteus_oculatus
WBGene00012342	mtr-4	94	51.187	ENSLAFG00000010497	MTREX	91	51.525	Loxodonta_africana
WBGene00012342	mtr-4	97	52.324	ENSMFAG00000031610	MTREX	91	53.733	Macaca_fascicularis
WBGene00012342	mtr-4	97	52.343	ENSMMUG00000010379	MTREX	91	53.733	Macaca_mulatta
WBGene00012342	mtr-4	97	52.324	ENSMNEG00000032746	MTREX	91	53.733	Macaca_nemestrina
WBGene00012342	mtr-4	97	52.324	ENSMLEG00000041051	MTREX	91	53.733	Mandrillus_leucophaeus
WBGene00012342	mtr-4	91	53.560	ENSMAMG00000016753	mtrex	94	53.994	Mastacembelus_armatus
WBGene00012342	mtr-4	91	53.575	ENSMZEG00005000414	mtrex	91	53.715	Maylandia_zebra
WBGene00012342	mtr-4	91	42.630	ENSMGAG00000003980	MTREX	95	42.630	Meleagris_gallopavo
WBGene00012342	mtr-4	95	52.953	ENSMAUG00000010727	Mtrex	91	53.733	Mesocricetus_auratus
WBGene00012342	mtr-4	97	51.980	ENSMICG00000012779	MTREX	91	53.628	Microcebus_murinus
WBGene00012342	mtr-4	92	53.838	ENSMOCG00000019886	Mtrex	91	53.838	Microtus_ochrogaster
WBGene00012342	mtr-4	91	53.185	ENSMMOG00000002476	mtrex	94	53.291	Mola_mola
WBGene00012342	mtr-4	97	51.944	ENSMODG00000019494	MTREX	92	53.207	Monodelphis_domestica
WBGene00012342	mtr-4	91	51.660	ENSMALG00000002917	mtrex	97	51.763	Monopterus_albus
WBGene00012342	mtr-4	96	52.328	MGP_CAROLIEiJ_G0018896	Mtrex	91	53.417	Mus_caroli
WBGene00012342	mtr-4	95	52.648	ENSMUSG00000016018	Mtrex	91	53.417	Mus_musculus
WBGene00012342	mtr-4	94	52.990	MGP_PahariEiJ_G0015967	Mtrex	91	53.417	Mus_pahari
WBGene00012342	mtr-4	95	52.648	MGP_SPRETEiJ_G0019775	Mtrex	91	53.417	Mus_spretus
WBGene00012342	mtr-4	94	53.299	ENSMPUG00000007619	MTREX	91	53.628	Mustela_putorius_furo
WBGene00012342	mtr-4	98	51.629	ENSMLUG00000001152	MTREX	91	53.354	Myotis_lucifugus
WBGene00012342	mtr-4	95	52.953	ENSNGAG00000011938	Mtrex	91	53.733	Nannospalax_galili
WBGene00012342	mtr-4	91	53.469	ENSNBRG00000011293	mtrex	91	53.715	Neolamprologus_brichardi
WBGene00012342	mtr-4	95	50.610	ENSNLEG00000001494	MTREX	91	51.207	Nomascus_leucogenys
WBGene00012342	mtr-4	68	66.667	ENSMEUG00000006496	-	67	66.667	Notamacropus_eugenii
WBGene00012342	mtr-4	92	44.059	ENSOPRG00000008009	MTREX	91	44.059	Ochotona_princeps
WBGene00012342	mtr-4	98	51.485	ENSODEG00000017234	MTREX	91	53.207	Octodon_degus
WBGene00012342	mtr-4	91	52.966	ENSONIG00000007587	mtrex	91	53.715	Oreochromis_niloticus
WBGene00012342	mtr-4	98	51.830	ENSOCUG00000004463	MTREX	91	53.628	Oryctolagus_cuniculus
WBGene00012342	mtr-4	91	53.822	ENSORLG00000005443	mtrex	91	54.140	Oryzias_latipes
WBGene00012342	mtr-4	91	53.715	ENSORLG00020006329	mtrex	93	53.606	Oryzias_latipes_hni
WBGene00012342	mtr-4	91	53.822	ENSORLG00015012924	mtrex	93	53.714	Oryzias_latipes_hsok
WBGene00012342	mtr-4	91	53.862	ENSOMEG00000008825	mtrex	91	53.862	Oryzias_melastigma
WBGene00012342	mtr-4	94	53.354	ENSOGAG00000002886	MTREX	91	53.628	Otolemur_garnettii
WBGene00012342	mtr-4	98	51.972	ENSOARG00000007764	MTREX	91	53.564	Ovis_aries
WBGene00012342	mtr-4	95	53.055	ENSPPAG00000039291	MTREX	91	53.733	Pan_paniscus
WBGene00012342	mtr-4	100	51.098	ENSPPRG00000019701	MTREX	91	53.628	Panthera_pardus
WBGene00012342	mtr-4	100	49.666	ENSPTIG00000009313	MTREX	91	52.050	Panthera_tigris_altaica
WBGene00012342	mtr-4	95	53.055	ENSPTRG00000016878	MTREX	91	53.733	Pan_troglodytes
WBGene00012342	mtr-4	97	52.324	ENSPANG00000009697	MTREX	91	53.733	Papio_anubis
WBGene00012342	mtr-4	91	54.565	ENSPKIG00000020833	mtrex	95	54.198	Paramormyrops_kingsleyae
WBGene00012342	mtr-4	96	52.983	ENSPSIG00000012150	MTREX	92	54.259	Pelodiscus_sinensis
WBGene00012342	mtr-4	91	53.773	ENSPMGG00000002582	mtrex	93	53.985	Periophthalmus_magnuspinnatus
WBGene00012342	mtr-4	95	46.856	ENSPMAG00000009668	mtrex	91	49.612	Petromyzon_marinus
WBGene00012342	mtr-4	91	53.625	ENSPCIG00000024730	MTREX	99	53.625	Phascolarctos_cinereus
WBGene00012342	mtr-4	76	49.301	ENSPFOG00000003141	mtrex	99	49.301	Poecilia_formosa
WBGene00012342	mtr-4	91	53.879	ENSPLAG00000021311	mtrex	91	53.879	Poecilia_latipinna
WBGene00012342	mtr-4	91	53.476	ENSPMEG00000010597	mtrex	97	53.690	Poecilia_mexicana
WBGene00012342	mtr-4	91	53.887	ENSPREG00000003089	mtrex	92	53.887	Poecilia_reticulata
WBGene00012342	mtr-4	97	51.683	ENSPPYG00000015469	MTREX	90	53.053	Pongo_abelii
WBGene00012342	mtr-4	77	49.144	ENSPCAG00000013120	MTREX	76	49.144	Procavia_capensis
WBGene00012342	mtr-4	90	50.649	ENSPCOG00000018092	MTREX	90	67.308	Propithecus_coquereli
WBGene00012342	mtr-4	100	51.098	ENSPVAG00000002445	MTREX	91	53.628	Pteropus_vampyrus
WBGene00012342	mtr-4	91	53.469	ENSPNYG00000006164	mtrex	91	53.609	Pundamilia_nyererei
WBGene00012342	mtr-4	94	53.183	ENSPNAG00000008794	mtrex	93	53.560	Pygocentrus_nattereri
WBGene00012342	mtr-4	93	52.544	ENSRNOG00000010125	Mtrex	87	53.326	Rattus_norvegicus
WBGene00012342	mtr-4	95	52.240	ENSRBIG00000034930	MTREX	91	52.892	Rhinopithecus_bieti
WBGene00012342	mtr-4	95	53.055	ENSRROG00000039895	MTREX	91	53.733	Rhinopithecus_roxellana
WBGene00012342	mtr-4	91	47.170	YJL050W	MTR4	89	46.905	Saccharomyces_cerevisiae
WBGene00012342	mtr-4	94	53.251	ENSSBOG00000026693	MTREX	93	53.628	Saimiri_boliviensis_boliviensis
WBGene00012342	mtr-4	94	52.887	ENSSHAG00000004600	MTREX	94	53.625	Sarcophilus_harrisii
WBGene00012342	mtr-4	91	54.295	ENSSFOG00015014355	skiv2l2	92	54.295	Scleropages_formosus
WBGene00012342	mtr-4	91	52.648	ENSSMAG00000007572	mtrex	91	53.291	Scophthalmus_maximus
WBGene00012342	mtr-4	96	52.218	ENSSDUG00000023789	mtrex	93	53.928	Seriola_dumerili
WBGene00012342	mtr-4	97	51.745	ENSSLDG00000006301	mtrex	99	51.748	Seriola_lalandi_dorsalis
WBGene00012342	mtr-4	92	53.417	ENSSARG00000008387	MTREX	91	53.417	Sorex_araneus
WBGene00012342	mtr-4	81	70.614	ENSSPUG00000007071	MTREX	85	70.614	Sphenodon_punctatus
WBGene00012342	mtr-4	91	53.526	ENSSPAG00000011319	mtrex	92	53.739	Stegastes_partitus
WBGene00012342	mtr-4	94	53.299	ENSSSCG00000016911	MTREX	91	53.628	Sus_scrofa
WBGene00012342	mtr-4	92	53.935	ENSTGUG00000002480	MTREX	91	53.935	Taeniopygia_guttata
WBGene00012342	mtr-4	96	51.113	ENSTRUG00000014571	mtrex	96	51.417	Takifugu_rubripes
WBGene00012342	mtr-4	88	45.325	ENSTBEG00000007769	MTREX	87	45.325	Tupaia_belangeri
WBGene00012342	mtr-4	98	51.533	ENSTTRG00000008678	MTREX	91	53.417	Tursiops_truncatus
WBGene00012342	mtr-4	94	53.299	ENSUAMG00000023061	MTREX	91	53.628	Ursus_americanus
WBGene00012342	mtr-4	94	52.832	ENSUMAG00000009373	MTREX	99	53.326	Ursus_maritimus
WBGene00012342	mtr-4	88	63.636	ENSVPAG00000011174	MTREX	85	64.637	Vicugna_pacos
WBGene00012342	mtr-4	94	53.196	ENSVVUG00000021337	MTREX	91	53.523	Vulpes_vulpes
WBGene00012342	mtr-4	92	54.774	ENSXETG00000032798	MTREX	92	54.774	Xenopus_tropicalis
WBGene00012342	mtr-4	91	54.091	ENSXMAG00000004799	mtrex	95	54.118	Xiphophorus_maculatus