EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00012652 (Gene tree)
Gene ID: -
Gene Symbol: Y39A1A.14
Alias: -
Full Name: Ribosomal RNA small subunit methyltransferase nep-1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 1390 bases
Position: chrIII:10649519-10650908
Accession: Q9XX15
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y39A1A	EMG1	PF03587.14	3.3e-72	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y39A1A.14	-	1053	-	Y39A1A.14	231 (aa)	NP_499349	Q9XX15

Gene Model

Click here to download WBGene00012652's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012652's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012652	Y39A1A.14	99	54.783	ENSG00000126749	EMG1	93	54.783	Homo_sapiens
WBGene00012652	Y39A1A.14	98	52.655	ENSAPOG00000023213	emg1	95	52.655	Acanthochromis_polyacanthus
WBGene00012652	Y39A1A.14	98	55.066	ENSAMEG00000013753	EMG1	91	55.066	Ailuropoda_melanoleuca
WBGene00012652	Y39A1A.14	98	51.770	ENSACIG00000011786	emg1	94	51.770	Amphilophus_citrinellus
WBGene00012652	Y39A1A.14	98	52.212	ENSAOCG00000006520	emg1	91	52.212	Amphiprion_ocellaris
WBGene00012652	Y39A1A.14	98	52.212	ENSAPEG00000011094	emg1	91	52.212	Amphiprion_percula
WBGene00012652	Y39A1A.14	98	52.212	ENSATEG00000021642	emg1	94	52.212	Anabas_testudineus
WBGene00012652	Y39A1A.14	83	56.545	ENSAPLG00000005308	EMG1	100	56.545	Anas_platyrhynchos
WBGene00012652	Y39A1A.14	92	56.808	ENSACAG00000007210	EMG1	92	56.808	Anolis_carolinensis
WBGene00012652	Y39A1A.14	99	54.545	ENSANAG00000022855	-	93	54.545	Aotus_nancymaae
WBGene00012652	Y39A1A.14	99	50.870	ENSANAG00000029536	-	92	50.870	Aotus_nancymaae
WBGene00012652	Y39A1A.14	98	52.655	ENSACLG00000023688	emg1	94	52.655	Astatotilapia_calliptera
WBGene00012652	Y39A1A.14	98	51.770	ENSAMXG00000018994	emg1	94	51.770	Astyanax_mexicanus
WBGene00012652	Y39A1A.14	99	55.459	ENSBTAG00000013126	EMG1	65	55.459	Bos_taurus
WBGene00012652	Y39A1A.14	99	55.702	ENSCJAG00000007120	EMG1	92	55.702	Callithrix_jacchus
WBGene00012652	Y39A1A.14	98	55.066	ENSCAFG00000014424	EMG1	91	55.066	Canis_familiaris
WBGene00012652	Y39A1A.14	98	55.066	ENSCAFG00020003127	EMG1	91	55.066	Canis_lupus_dingo
WBGene00012652	Y39A1A.14	99	56.140	ENSCHIG00000003188	EMG1	92	56.140	Capra_hircus
WBGene00012652	Y39A1A.14	66	60.526	ENSTSYG00000035847	EMG1	99	60.526	Carlito_syrichta
WBGene00012652	Y39A1A.14	66	60.526	ENSCAPG00000011212	EMG1	99	60.526	Cavia_aperea
WBGene00012652	Y39A1A.14	88	59.804	ENSCPOG00000025388	EMG1	83	59.804	Cavia_porcellus
WBGene00012652	Y39A1A.14	66	42.763	ENSCCAG00000024274	-	99	42.763	Cebus_capucinus
WBGene00012652	Y39A1A.14	99	55.217	ENSCCAG00000033309	-	93	55.217	Cebus_capucinus
WBGene00012652	Y39A1A.14	64	47.619	ENSCCAG00000034889	-	84	47.619	Cebus_capucinus
WBGene00012652	Y39A1A.14	99	55.217	ENSCATG00000016750	EMG1	93	55.217	Cercocebus_atys
WBGene00012652	Y39A1A.14	97	55.605	ENSCLAG00000015067	EMG1	90	55.605	Chinchilla_lanigera
WBGene00012652	Y39A1A.14	99	55.217	ENSCSAG00000010140	EMG1	93	55.217	Chlorocebus_sabaeus
WBGene00012652	Y39A1A.14	94	55.760	ENSCHOG00000002886	EMG1	88	55.760	Choloepus_hoffmanni
WBGene00012652	Y39A1A.14	80	54.595	ENSCPBG00000005167	EMG1	63	54.595	Chrysemys_picta_bellii
WBGene00012652	Y39A1A.14	94	51.598	ENSCING00000022202	-	92	51.598	Ciona_intestinalis
WBGene00012652	Y39A1A.14	99	49.123	ENSCSAVG00000005612	-	96	49.123	Ciona_savignyi
WBGene00012652	Y39A1A.14	99	55.217	ENSCANG00000043101	-	93	55.217	Colobus_angolensis_palliatus
WBGene00012652	Y39A1A.14	99	49.130	ENSCANG00000042498	-	99	56.028	Colobus_angolensis_palliatus
WBGene00012652	Y39A1A.14	97	54.709	ENSCGRG00001018228	Emg1	90	54.709	Cricetulus_griseus_chok1gshd
WBGene00012652	Y39A1A.14	97	54.709	ENSCGRG00000018238	Emg1	90	54.709	Cricetulus_griseus_crigri
WBGene00012652	Y39A1A.14	98	51.092	ENSCSEG00000020136	emg1	94	51.092	Cynoglossus_semilaevis
WBGene00012652	Y39A1A.14	99	52.193	ENSCVAG00000001164	emg1	94	52.193	Cyprinodon_variegatus
WBGene00012652	Y39A1A.14	98	51.304	ENSDARG00000056914	emg1	94	51.304	Danio_rerio
WBGene00012652	Y39A1A.14	97	55.157	ENSDNOG00000005533	EMG1	90	55.157	Dasypus_novemcinctus
WBGene00012652	Y39A1A.14	83	56.021	ENSDORG00000009795	Emg1	81	56.021	Dipodomys_ordii
WBGene00012652	Y39A1A.14	90	51.643	FBgn0029714	CG3527	85	51.643	Drosophila_melanogaster
WBGene00012652	Y39A1A.14	66	37.500	ENSETEG00000009111	-	99	37.500	Echinops_telfairi
WBGene00012652	Y39A1A.14	90	50.472	ENSEBUG00000008287	emg1	81	50.472	Eptatretus_burgeri
WBGene00012652	Y39A1A.14	98	55.947	ENSEASG00005016018	EMG1	91	55.947	Equus_asinus_asinus
WBGene00012652	Y39A1A.14	98	55.507	ENSECAG00000022412	EMG1	91	55.507	Equus_caballus
WBGene00012652	Y39A1A.14	99	54.825	ENSEEUG00000000065	EMG1	92	54.825	Erinaceus_europaeus
WBGene00012652	Y39A1A.14	98	55.947	ENSFCAG00000004288	EMG1	91	55.947	Felis_catus
WBGene00012652	Y39A1A.14	95	55.000	ENSFALG00000004617	EMG1	91	55.000	Ficedula_albicollis
WBGene00012652	Y39A1A.14	99	54.585	ENSFDAG00000011086	EMG1	92	54.585	Fukomys_damarensis
WBGene00012652	Y39A1A.14	53	49.600	ENSFHEG00000014379	emg1	56	49.600	Fundulus_heteroclitus
WBGene00012652	Y39A1A.14	51	49.153	ENSFHEG00000014307	emg1	73	49.153	Fundulus_heteroclitus
WBGene00012652	Y39A1A.14	98	50.000	ENSGMOG00000011025	emg1	92	50.000	Gadus_morhua
WBGene00012652	Y39A1A.14	96	55.507	ENSGALG00000014568	EMG1	97	55.507	Gallus_gallus
WBGene00012652	Y39A1A.14	99	53.070	ENSGAFG00000014143	emg1	94	53.070	Gambusia_affinis
WBGene00012652	Y39A1A.14	98	49.558	ENSGACG00000010330	emg1	92	49.558	Gasterosteus_aculeatus
WBGene00012652	Y39A1A.14	83	57.292	ENSGAGG00000005641	EMG1	99	59.868	Gopherus_agassizii
WBGene00012652	Y39A1A.14	99	54.783	ENSGGOG00000004287	EMG1	93	54.783	Gorilla_gorilla
WBGene00012652	Y39A1A.14	98	52.655	ENSHBUG00000014862	emg1	94	52.655	Haplochromis_burtoni
WBGene00012652	Y39A1A.14	99	55.022	ENSHGLG00000001300	EMG1	91	55.022	Heterocephalus_glaber_female
WBGene00012652	Y39A1A.14	99	55.022	ENSHGLG00100011644	EMG1	91	55.022	Heterocephalus_glaber_male
WBGene00012652	Y39A1A.14	98	51.327	ENSHCOG00000017870	emg1	94	51.327	Hippocampus_comes
WBGene00012652	Y39A1A.14	94	52.489	ENSIPUG00000008261	emg1	92	52.489	Ictalurus_punctatus
WBGene00012652	Y39A1A.14	99	55.022	ENSSTOG00000000387	EMG1	92	55.022	Ictidomys_tridecemlineatus
WBGene00012652	Y39A1A.14	99	54.783	ENSJJAG00000018448	Emg1	92	54.783	Jaculus_jaculus
WBGene00012652	Y39A1A.14	92	53.774	ENSKMAG00000007069	emg1	87	53.774	Kryptolebias_marmoratus
WBGene00012652	Y39A1A.14	98	50.442	ENSLBEG00000007424	emg1	94	50.442	Labrus_bergylta
WBGene00012652	Y39A1A.14	99	51.316	ENSLOCG00000008451	emg1	92	51.316	Lepisosteus_oculatus
WBGene00012652	Y39A1A.14	98	55.066	ENSLAFG00000001314	EMG1	91	55.066	Loxodonta_africana
WBGene00012652	Y39A1A.14	99	55.217	ENSMFAG00000037142	EMG1	93	55.217	Macaca_fascicularis
WBGene00012652	Y39A1A.14	99	55.217	ENSMMUG00000010207	EMG1	93	55.217	Macaca_mulatta
WBGene00012652	Y39A1A.14	99	55.217	ENSMNEG00000040907	EMG1	93	55.217	Macaca_nemestrina
WBGene00012652	Y39A1A.14	99	55.217	ENSMLEG00000026029	EMG1	93	55.217	Mandrillus_leucophaeus
WBGene00012652	Y39A1A.14	98	52.655	ENSMAMG00000001888	emg1	94	52.655	Mastacembelus_armatus
WBGene00012652	Y39A1A.14	98	52.655	ENSMZEG00005017546	emg1	94	52.655	Maylandia_zebra
WBGene00012652	Y39A1A.14	91	57.346	ENSMGAG00000014145	EMG1	88	57.674	Meleagris_gallopavo
WBGene00012652	Y39A1A.14	99	53.712	ENSMAUG00000011093	Emg1	92	53.712	Mesocricetus_auratus
WBGene00012652	Y39A1A.14	99	54.148	ENSMICG00000001790	EMG1	92	54.148	Microcebus_murinus
WBGene00012652	Y39A1A.14	99	54.585	ENSMOCG00000022570	Emg1	92	54.585	Microtus_ochrogaster
WBGene00012652	Y39A1A.14	98	51.327	ENSMMOG00000016090	emg1	94	51.327	Mola_mola
WBGene00012652	Y39A1A.14	88	60.294	ENSMODG00000018161	EMG1	81	60.294	Monodelphis_domestica
WBGene00012652	Y39A1A.14	98	51.327	ENSMALG00000022477	emg1	94	51.327	Monopterus_albus
WBGene00012652	Y39A1A.14	99	54.585	MGP_CAROLIEiJ_G0028844	Emg1	92	54.585	Mus_caroli
WBGene00012652	Y39A1A.14	99	54.585	ENSMUSG00000004268	Emg1	92	54.585	Mus_musculus
WBGene00012652	Y39A1A.14	97	56.054	MGP_PahariEiJ_G0022605	Emg1	90	56.054	Mus_pahari
WBGene00012652	Y39A1A.14	99	54.585	MGP_SPRETEiJ_G0029886	Emg1	92	54.585	Mus_spretus
WBGene00012652	Y39A1A.14	98	55.507	ENSMPUG00000016763	EMG1	91	55.507	Mustela_putorius_furo
WBGene00012652	Y39A1A.14	99	53.680	ENSMLUG00000009196	EMG1	92	53.680	Myotis_lucifugus
WBGene00012652	Y39A1A.14	99	54.148	ENSNGAG00000022592	Emg1	94	54.148	Nannospalax_galili
WBGene00012652	Y39A1A.14	98	52.655	ENSNBRG00000001192	emg1	94	52.655	Neolamprologus_brichardi
WBGene00012652	Y39A1A.14	99	54.783	ENSNLEG00000005080	EMG1	93	54.783	Nomascus_leucogenys
WBGene00012652	Y39A1A.14	91	54.976	ENSMEUG00000000831	EMG1	91	54.976	Notamacropus_eugenii
WBGene00012652	Y39A1A.14	82	57.895	ENSOPRG00000016878	-	100	57.895	Ochotona_princeps
WBGene00012652	Y39A1A.14	60	58.273	ENSOPRG00000004071	-	86	58.273	Ochotona_princeps
WBGene00012652	Y39A1A.14	96	55.656	ENSODEG00000004059	EMG1	90	55.656	Octodon_degus
WBGene00012652	Y39A1A.14	98	52.655	ENSONIG00000012893	emg1	94	52.655	Oreochromis_niloticus
WBGene00012652	Y39A1A.14	99	55.263	ENSOCUG00000003603	EMG1	92	55.263	Oryctolagus_cuniculus
WBGene00012652	Y39A1A.14	98	52.655	ENSORLG00000012146	emg1	91	52.655	Oryzias_latipes
WBGene00012652	Y39A1A.14	98	52.655	ENSORLG00020005499	emg1	94	52.655	Oryzias_latipes_hni
WBGene00012652	Y39A1A.14	98	52.655	ENSORLG00015011535	emg1	94	52.655	Oryzias_latipes_hsok
WBGene00012652	Y39A1A.14	98	52.655	ENSOMEG00000012687	emg1	94	52.655	Oryzias_melastigma
WBGene00012652	Y39A1A.14	99	54.585	ENSOGAG00000006975	EMG1	92	54.585	Otolemur_garnettii
WBGene00012652	Y39A1A.14	99	55.217	ENSOARG00000004923	EMG1	92	55.217	Ovis_aries
WBGene00012652	Y39A1A.14	99	54.783	ENSPPAG00000033046	EMG1	93	54.783	Pan_paniscus
WBGene00012652	Y39A1A.14	98	55.507	ENSPPRG00000012350	EMG1	91	55.507	Panthera_pardus
WBGene00012652	Y39A1A.14	98	55.507	ENSPTIG00000000358	EMG1	91	55.507	Panthera_tigris_altaica
WBGene00012652	Y39A1A.14	99	54.783	ENSPTRG00000048050	EMG1	93	54.783	Pan_troglodytes
WBGene00012652	Y39A1A.14	99	56.087	ENSPANG00000005523	-	93	56.087	Papio_anubis
WBGene00012652	Y39A1A.14	99	55.652	ENSPANG00000019398	-	93	55.652	Papio_anubis
WBGene00012652	Y39A1A.14	98	50.885	ENSPKIG00000025303	emg1	94	50.885	Paramormyrops_kingsleyae
WBGene00012652	Y39A1A.14	90	57.212	ENSPSIG00000011094	EMG1	89	57.212	Pelodiscus_sinensis
WBGene00012652	Y39A1A.14	98	51.770	ENSPMGG00000019918	emg1	94	51.770	Periophthalmus_magnuspinnatus
WBGene00012652	Y39A1A.14	97	55.605	ENSPEMG00000010244	Emg1	90	55.605	Peromyscus_maniculatus_bairdii
WBGene00012652	Y39A1A.14	97	56.502	ENSPCIG00000002814	EMG1	90	56.502	Phascolarctos_cinereus
WBGene00012652	Y39A1A.14	99	52.632	ENSPFOG00000013034	emg1	94	52.632	Poecilia_formosa
WBGene00012652	Y39A1A.14	99	52.632	ENSPLAG00000000125	emg1	94	52.632	Poecilia_latipinna
WBGene00012652	Y39A1A.14	99	53.070	ENSPMEG00000016802	emg1	94	53.070	Poecilia_mexicana
WBGene00012652	Y39A1A.14	99	53.509	ENSPREG00000010409	emg1	77	53.509	Poecilia_reticulata
WBGene00012652	Y39A1A.14	99	55.217	ENSPPYG00000004215	EMG1	93	55.217	Pongo_abelii
WBGene00012652	Y39A1A.14	99	46.725	ENSPCAG00000012368	EMG1	91	46.725	Procavia_capensis
WBGene00012652	Y39A1A.14	99	54.585	ENSPCOG00000028560	EMG1	92	54.585	Propithecus_coquereli
WBGene00012652	Y39A1A.14	99	53.712	ENSPVAG00000006030	EMG1	92	53.712	Pteropus_vampyrus
WBGene00012652	Y39A1A.14	98	52.655	ENSPNYG00000023172	emg1	94	52.655	Pundamilia_nyererei
WBGene00012652	Y39A1A.14	98	50.000	ENSPNAG00000019953	emg1	94	50.000	Pygocentrus_nattereri
WBGene00012652	Y39A1A.14	97	56.502	ENSRNOG00000012828	Emg1	90	56.502	Rattus_norvegicus
WBGene00012652	Y39A1A.14	99	55.217	ENSRBIG00000031315	EMG1	93	55.217	Rhinopithecus_bieti
WBGene00012652	Y39A1A.14	99	55.217	ENSRROG00000032961	EMG1	93	55.217	Rhinopithecus_roxellana
WBGene00012652	Y39A1A.14	89	46.262	YLR186W	EMG1	85	46.262	Saccharomyces_cerevisiae
WBGene00012652	Y39A1A.14	99	38.261	ENSSBOG00000022895	-	92	38.261	Saimiri_boliviensis_boliviensis
WBGene00012652	Y39A1A.14	99	55.217	ENSSBOG00000029143	-	93	55.217	Saimiri_boliviensis_boliviensis
WBGene00012652	Y39A1A.14	97	55.157	ENSSHAG00000016428	EMG1	90	55.157	Sarcophilus_harrisii
WBGene00012652	Y39A1A.14	98	50.885	ENSSFOG00015002421	emg1	94	50.885	Scleropages_formosus
WBGene00012652	Y39A1A.14	98	52.212	ENSSMAG00000011806	emg1	94	52.212	Scophthalmus_maximus
WBGene00012652	Y39A1A.14	98	51.770	ENSSDUG00000011345	emg1	89	51.770	Seriola_dumerili
WBGene00012652	Y39A1A.14	98	52.212	ENSSLDG00000023439	emg1	89	52.212	Seriola_lalandi_dorsalis
WBGene00012652	Y39A1A.14	99	45.614	ENSSARG00000002227	EMG1	92	45.614	Sorex_araneus
WBGene00012652	Y39A1A.14	90	56.522	ENSSPUG00000014446	EMG1	87	56.522	Sphenodon_punctatus
WBGene00012652	Y39A1A.14	97	52.889	ENSSPAG00000005460	emg1	94	52.889	Stegastes_partitus
WBGene00012652	Y39A1A.14	99	54.386	ENSSSCG00000026812	EMG1	92	54.386	Sus_scrofa
WBGene00012652	Y39A1A.14	90	57.488	ENSTGUG00000013271	EMG1	99	57.488	Taeniopygia_guttata
WBGene00012652	Y39A1A.14	98	51.327	ENSTRUG00000001906	emg1	94	51.327	Takifugu_rubripes
WBGene00012652	Y39A1A.14	98	51.327	ENSTNIG00000008047	emg1	93	51.327	Tetraodon_nigroviridis
WBGene00012652	Y39A1A.14	88	58.824	ENSTBEG00000015406	EMG1	97	58.824	Tupaia_belangeri
WBGene00012652	Y39A1A.14	99	42.105	ENSTTRG00000004810	EMG1	92	42.105	Tursiops_truncatus
WBGene00012652	Y39A1A.14	98	55.507	ENSUAMG00000026959	EMG1	91	55.507	Ursus_americanus
WBGene00012652	Y39A1A.14	98	55.507	ENSUMAG00000003248	EMG1	91	55.507	Ursus_maritimus
WBGene00012652	Y39A1A.14	98	55.066	ENSVVUG00000010807	EMG1	91	55.066	Vulpes_vulpes
WBGene00012652	Y39A1A.14	89	54.369	ENSXETG00000023917	emg1	99	54.369	Xenopus_tropicalis
WBGene00012652	Y39A1A.14	99	52.632	ENSXMAG00000011508	emg1	94	52.632	Xiphophorus_maculatus