EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00012730 (Gene tree)
Gene ID: -
Gene Symbol: xrn-1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 20213 bases
Position: chrII:14068907-14089119
Accession: Q9BHK7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y39G8C	XRN_N	PF03159.18	2.2e-93	1	1
Y39G8C	XRN_N	PF03159.18	2.2e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y39G8C.1.1	-	5093	NM_064544	Y39G8C.1.1	1591 (aa)	NP_496945	Q9BHK7
Y39G8C.1.2	-	5091	NM_064544	Y39G8C.1.2	1591 (aa)	NP_496945	Q9BHK7

Gene Model

Click here to download WBGene00012730's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012730's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012730	xrn-1	80	39.084	ENSG00000114127	XRN1	95	80.392	Homo_sapiens
WBGene00012730	xrn-1	75	61.930	ENSAPOG00000000622	xrn1	94	45.269	Acanthochromis_polyacanthus
WBGene00012730	xrn-1	80	38.995	ENSAMEG00000012538	XRN1	70	38.737	Ailuropoda_melanoleuca
WBGene00012730	xrn-1	79	60.149	ENSACIG00000001057	xrn1	73	38.456	Amphilophus_citrinellus
WBGene00012730	xrn-1	83	35.933	ENSAOCG00000014097	xrn1	84	60.656	Amphiprion_ocellaris
WBGene00012730	xrn-1	75	61.930	ENSAPEG00000006620	xrn1	76	37.003	Amphiprion_percula
WBGene00012730	xrn-1	72	61.732	ENSATEG00000009752	xrn1	76	36.782	Anabas_testudineus
WBGene00012730	xrn-1	79	37.074	ENSAPLG00000004905	XRN1	68	37.966	Anas_platyrhynchos
WBGene00012730	xrn-1	78	38.414	ENSACAG00000004985	XRN1	67	38.110	Anolis_carolinensis
WBGene00012730	xrn-1	83	38.541	ENSANAG00000029013	XRN1	99	39.823	Aotus_nancymaae
WBGene00012730	xrn-1	80	37.757	ENSACLG00000004806	xrn1	70	37.834	Astatotilapia_calliptera
WBGene00012730	xrn-1	74	61.394	ENSAMXG00000019370	xrn1	94	80.392	Astyanax_mexicanus
WBGene00012730	xrn-1	80	38.690	ENSBTAG00000011524	XRN1	71	39.422	Bos_taurus
WBGene00012730	xrn-1	81	38.993	ENSCJAG00000001872	XRN1	73	38.982	Callithrix_jacchus
WBGene00012730	xrn-1	83	38.905	ENSCAFG00000007783	XRN1	70	38.737	Canis_familiaris
WBGene00012730	xrn-1	83	38.905	ENSCAFG00020009120	XRN1	93	51.198	Canis_lupus_dingo
WBGene00012730	xrn-1	80	38.614	ENSCHIG00000019192	XRN1	70	39.498	Capra_hircus
WBGene00012730	xrn-1	78	39.720	ENSTSYG00000002705	XRN1	71	39.011	Carlito_syrichta
WBGene00012730	xrn-1	83	38.877	ENSCCAG00000034800	XRN1	93	52.632	Cebus_capucinus
WBGene00012730	xrn-1	80	39.256	ENSCATG00000041794	XRN1	71	39.011	Cercocebus_atys
WBGene00012730	xrn-1	83	38.263	ENSCLAG00000001451	XRN1	93	52.331	Chinchilla_lanigera
WBGene00012730	xrn-1	80	39.180	ENSCSAG00000011265	XRN1	70	38.935	Chlorocebus_sabaeus
WBGene00012730	xrn-1	67	37.226	ENSCSAVG00000008584	-	76	37.226	Ciona_savignyi
WBGene00012730	xrn-1	80	39.190	ENSCANG00000037495	XRN1	93	52.481	Colobus_angolensis_palliatus
WBGene00012730	xrn-1	80	38.720	ENSCGRG00001019411	Xrn1	93	52.782	Cricetulus_griseus_chok1gshd
WBGene00012730	xrn-1	80	38.720	ENSCGRG00000012464	Xrn1	93	52.782	Cricetulus_griseus_crigri
WBGene00012730	xrn-1	68	38.593	ENSCSEG00000021285	xrn1	92	79.412	Cynoglossus_semilaevis
WBGene00012730	xrn-1	68	62.198	ENSCVAG00000013089	xrn1	97	62.198	Cyprinodon_variegatus
WBGene00012730	xrn-1	79	38.217	ENSDARG00000091652	xrn1	98	48.321	Danio_rerio
WBGene00012730	xrn-1	78	38.276	ENSDORG00000013833	Xrn1	70	38.783	Dipodomys_ordii
WBGene00012730	xrn-1	76	55.496	FBgn0020261	pcm	72	35.334	Drosophila_melanogaster
WBGene00012730	xrn-1	73	63.904	ENSEASG00005002687	XRN1	93	52.782	Equus_asinus_asinus
WBGene00012730	xrn-1	80	38.808	ENSECAG00000008301	XRN1	70	38.944	Equus_caballus
WBGene00012730	xrn-1	73	64.075	ENSELUG00000000169	xrn1	70	38.732	Esox_lucius
WBGene00012730	xrn-1	80	35.523	ENSFCAG00000027589	XRN1	79	64.075	Felis_catus
WBGene00012730	xrn-1	83	37.888	ENSFALG00000007021	XRN1	66	38.504	Ficedula_albicollis
WBGene00012730	xrn-1	78	38.700	ENSFDAG00000020494	XRN1	93	52.481	Fukomys_damarensis
WBGene00012730	xrn-1	79	36.504	ENSGMOG00000006396	xrn1	69	38.051	Gadus_morhua
WBGene00012730	xrn-1	75	61.394	ENSGACG00000014328	xrn1	70	36.890	Gasterosteus_aculeatus
WBGene00012730	xrn-1	81	37.641	ENSGAGG00000017535	XRN1	72	38.444	Gopherus_agassizii
WBGene00012730	xrn-1	80	39.084	ENSGGOG00000008047	XRN1	70	38.838	Gorilla_gorilla
WBGene00012730	xrn-1	80	37.348	ENSHBUG00000005908	xrn1	95	45.336	Haplochromis_burtoni
WBGene00012730	xrn-1	81	38.519	ENSHGLG00000014476	XRN1	93	52.632	Heterocephalus_glaber_female
WBGene00012730	xrn-1	81	38.519	ENSHGLG00100015130	XRN1	93	52.632	Heterocephalus_glaber_male
WBGene00012730	xrn-1	85	37.456	ENSHCOG00000014062	xrn1	76	38.200	Hippocampus_comes
WBGene00012730	xrn-1	80	37.892	ENSIPUG00000015229	xrn1	72	37.823	Ictalurus_punctatus
WBGene00012730	xrn-1	83	37.979	ENSSTOG00000013552	XRN1	93	52.932	Ictidomys_tridecemlineatus
WBGene00012730	xrn-1	78	38.863	ENSJJAG00000010863	Xrn1	93	51.719	Jaculus_jaculus
WBGene00012730	xrn-1	80	37.681	ENSKMAG00000021356	xrn1	94	46.642	Kryptolebias_marmoratus
WBGene00012730	xrn-1	75	58.810	ENSLBEG00000018656	xrn1	96	79.412	Labrus_bergylta
WBGene00012730	xrn-1	81	37.874	ENSLACG00000009020	XRN1	69	38.218	Latimeria_chalumnae
WBGene00012730	xrn-1	81	38.421	ENSLOCG00000007944	xrn1	69	38.526	Lepisosteus_oculatus
WBGene00012730	xrn-1	71	40.830	ENSLAFG00000015426	XRN1	100	49.365	Loxodonta_africana
WBGene00012730	xrn-1	80	39.256	ENSMFAG00000032599	XRN1	71	39.210	Macaca_fascicularis
WBGene00012730	xrn-1	80	39.256	ENSMMUG00000014038	XRN1	71	39.210	Macaca_mulatta
WBGene00012730	xrn-1	80	39.408	ENSMNEG00000034217	XRN1	71	39.392	Macaca_nemestrina
WBGene00012730	xrn-1	80	37.920	ENSMAMG00000013219	xrn1	92	48.321	Mastacembelus_armatus
WBGene00012730	xrn-1	80	37.605	ENSMZEG00005015099	xrn1	70	37.957	Maylandia_zebra
WBGene00012730	xrn-1	79	37.297	ENSMGAG00000006333	XRN1	68	36.883	Meleagris_gallopavo
WBGene00012730	xrn-1	83	38.688	ENSMICG00000048948	XRN1	95	80.392	Microcebus_murinus
WBGene00012730	xrn-1	62	50.896	ENSMOCG00000008665	Xrn1	93	52.632	Microtus_ochrogaster
WBGene00012730	xrn-1	78	38.829	ENSMODG00000021236	XRN1	70	38.554	Monodelphis_domestica
WBGene00012730	xrn-1	77	62.198	ENSMALG00000004098	xrn1	71	35.294	Monopterus_albus
WBGene00012730	xrn-1	77	52.402	MGP_CAROLIEiJ_G0032535	Xrn1	100	67.500	Mus_caroli
WBGene00012730	xrn-1	83	38.274	ENSMUSG00000032410	Xrn1	100	67.500	Mus_musculus
WBGene00012730	xrn-1	84	38.265	MGP_PahariEiJ_G0015404	Xrn1	100	67.500	Mus_pahari
WBGene00012730	xrn-1	78	38.941	MGP_SPRETEiJ_G0033678	Xrn1	100	67.500	Mus_spretus
WBGene00012730	xrn-1	83	38.791	ENSMPUG00000012040	XRN1	70	39.117	Mustela_putorius_furo
WBGene00012730	xrn-1	83	39.175	ENSMLUG00000016885	XRN1	70	39.269	Myotis_lucifugus
WBGene00012730	xrn-1	62	49.327	ENSNGAG00000023964	Xrn1	94	50.376	Nannospalax_galili
WBGene00012730	xrn-1	80	39.313	ENSNLEG00000004726	XRN1	71	38.935	Nomascus_leucogenys
WBGene00012730	xrn-1	80	36.280	ENSONIG00000016673	xrn1	79	37.910	Oreochromis_niloticus
WBGene00012730	xrn-1	72	33.446	ENSOANG00000006735	XRN1	67	34.269	Ornithorhynchus_anatinus
WBGene00012730	xrn-1	80	38.171	ENSOCUG00000001861	XRN1	69	38.800	Oryctolagus_cuniculus
WBGene00012730	xrn-1	89	36.525	ENSORLG00000013005	xrn1	73	38.729	Oryzias_latipes
WBGene00012730	xrn-1	89	36.644	ENSORLG00020005559	xrn1	73	38.859	Oryzias_latipes_hni
WBGene00012730	xrn-1	89	36.301	ENSORLG00015022523	xrn1	76	38.555	Oryzias_latipes_hsok
WBGene00012730	xrn-1	84	36.527	ENSOMEG00000015397	xrn1	77	38.153	Oryzias_melastigma
WBGene00012730	xrn-1	81	36.822	ENSOGAG00000000170	XRN1	71	37.850	Otolemur_garnettii
WBGene00012730	xrn-1	81	38.943	ENSOARG00000006343	XRN1	71	39.530	Ovis_aries
WBGene00012730	xrn-1	80	38.995	ENSPPAG00000010180	XRN1	71	38.749	Pan_paniscus
WBGene00012730	xrn-1	80	38.919	ENSPPRG00000007125	XRN1	71	39.117	Panthera_pardus
WBGene00012730	xrn-1	80	38.995	ENSPTIG00000021081	XRN1	71	39.041	Panthera_tigris_altaica
WBGene00012730	xrn-1	80	38.995	ENSPTRG00000015482	XRN1	71	38.749	Pan_troglodytes
WBGene00012730	xrn-1	80	39.256	ENSPANG00000010638	XRN1	71	39.011	Papio_anubis
WBGene00012730	xrn-1	62	51.802	ENSPEMG00000020610	Xrn1	93	52.782	Peromyscus_maniculatus_bairdii
WBGene00012730	xrn-1	74	38.277	ENSPMAG00000002975	xrn1	100	38.308	Petromyzon_marinus
WBGene00012730	xrn-1	81	38.623	ENSPCIG00000028735	XRN1	93	52.200	Phascolarctos_cinereus
WBGene00012730	xrn-1	84	36.938	ENSPFOG00000013932	xrn1	77	38.034	Poecilia_formosa
WBGene00012730	xrn-1	76	63.003	ENSPLAG00000021653	xrn1	77	37.586	Poecilia_latipinna
WBGene00012730	xrn-1	76	63.003	ENSPMEG00000003076	xrn1	75	38.073	Poecilia_mexicana
WBGene00012730	xrn-1	80	37.167	ENSPREG00000021147	xrn1	73	37.023	Poecilia_reticulata
WBGene00012730	xrn-1	80	38.737	ENSPPYG00000014172	XRN1	70	38.914	Pongo_abelii
WBGene00012730	xrn-1	70	51.555	ENSPCAG00000005638	XRN1	66	51.311	Procavia_capensis
WBGene00012730	xrn-1	83	38.043	ENSPCOG00000013089	XRN1	93	52.853	Propithecus_coquereli
WBGene00012730	xrn-1	68	64.972	ENSPVAG00000016265	XRN1	63	64.873	Pteropus_vampyrus
WBGene00012730	xrn-1	80	37.986	ENSPNYG00000010570	xrn1	72	38.186	Pundamilia_nyererei
WBGene00012730	xrn-1	80	37.528	ENSPNAG00000023531	xrn1	71	37.604	Pygocentrus_nattereri
WBGene00012730	xrn-1	83	39.127	ENSRNOG00000042951	Xrn1	70	39.011	Rattus_norvegicus
WBGene00012730	xrn-1	80	38.982	ENSRBIG00000041227	XRN1	71	38.859	Rhinopithecus_bieti
WBGene00012730	xrn-1	94	32.526	YGL173C	XRN1	82	34.262	Saccharomyces_cerevisiae
WBGene00012730	xrn-1	83	39.012	ENSSBOG00000029561	XRN1	71	39.117	Saimiri_boliviensis_boliviensis
WBGene00012730	xrn-1	81	37.070	ENSSHAG00000016207	XRN1	69	37.432	Sarcophilus_harrisii
WBGene00012730	xrn-1	79	37.017	ENSSFOG00015024211	xrn1	72	38.372	Scleropages_formosus
WBGene00012730	xrn-1	84	37.219	ENSSMAG00000016534	xrn1	75	38.256	Scophthalmus_maximus
WBGene00012730	xrn-1	80	37.538	ENSSDUG00000010306	xrn1	76	37.957	Seriola_dumerili
WBGene00012730	xrn-1	80	37.280	ENSSLDG00000021543	xrn1	75	37.957	Seriola_lalandi_dorsalis
WBGene00012730	xrn-1	82	36.485	ENSTGUG00000008498	XRN1	69	38.270	Taeniopygia_guttata
WBGene00012730	xrn-1	71	61.930	ENSTRUG00000004895	xrn1	97	45.779	Takifugu_rubripes
WBGene00012730	xrn-1	73	62.032	ENSTNIG00000017615	xrn1	72	36.778	Tetraodon_nigroviridis
WBGene00012730	xrn-1	57	62.567	ENSTBEG00000003256	XRN1	53	62.466	Tupaia_belangeri
WBGene00012730	xrn-1	80	37.548	ENSTTRG00000012914	XRN1	70	38.063	Tursiops_truncatus
WBGene00012730	xrn-1	80	38.150	ENSUAMG00000001608	XRN1	93	50.376	Ursus_americanus
WBGene00012730	xrn-1	80	39.299	ENSUMAG00000013625	XRN1	70	39.041	Ursus_maritimus
WBGene00012730	xrn-1	71	40.259	ENSVPAG00000004690	XRN1	70	38.128	Vicugna_pacos
WBGene00012730	xrn-1	74	63.904	ENSVVUG00000024461	XRN1	99	47.015	Vulpes_vulpes
WBGene00012730	xrn-1	78	37.829	ENSXETG00000000619	xrn1	95	62.735	Xenopus_tropicalis
WBGene00012730	xrn-1	73	62.735	ENSXCOG00000007917	xrn1	72	36.086	Xiphophorus_couchianus
WBGene00012730	xrn-1	73	62.735	ENSXMAG00000018320	xrn1	75	37.128	Xiphophorus_maculatus