EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00012896 (Gene tree)
Gene ID: -
Gene Symbol: snrp-200
Alias: -
Full Name: Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 9948 bases
Position: chrII:12726963-12736910
Accession: Q9U2G0
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y46G5A	ResIII	PF04851.15	6.4e-24	1	2
Y46G5A	ResIII	PF04851.15	6.4e-24	2	2
Y46G5A	DEAD	PF00270.29	5.4e-47	1	2
Y46G5A	DEAD	PF00270.29	5.4e-47	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y46G5A.4	-	6817	NM_064309	Y46G5A.4	2145 (aa)	NP_496710	Q9U2G0

Gene Model

Click here to download WBGene00012896's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012896's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00012896	snrp-200	87	34.864	WBGene00013189	Y54E2A.4	99	32.597

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012896	snrp-200	99	36.749	YER172C	BRR2	95	38.075	Saccharomyces_cerevisiae