EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00012964 (Gene tree)
Gene ID: -
Gene Symbol: Y48A6B.3
Alias: -
Full Name: Putative H/ACA ribonucleoprotein complex subunit 2-like protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 713 bases
Position: chrIII:11008222-11008934
Accession: Q9XXD4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48A6B	Ribosomal_L7Ae	PF01248.26	1.5e-25	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48A6B.3	-	618	NM_067014	Y48A6B.3	163 (aa)	NP_499415	Q9XXD4

Gene Model

Click here to download WBGene00012964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012964's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00012964	Y48A6B.3	59	37.500	WBGene00010896	M28.5	74	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012964	Y48A6B.3	98	44.375	ENSG00000145912	NHP2	99	44.375	Homo_sapiens
WBGene00012964	Y48A6B.3	87	46.099	ENSAPOG00000004742	nhp2	91	46.809	Acanthochromis_polyacanthus
WBGene00012964	Y48A6B.3	78	50.394	ENSAMEG00000006471	NHP2	82	50.394	Ailuropoda_melanoleuca
WBGene00012964	Y48A6B.3	78	49.606	ENSACIG00000007968	nhp2	89	47.887	Amphilophus_citrinellus
WBGene00012964	Y48A6B.3	81	46.212	ENSAOCG00000016311	nhp2	91	46.809	Amphiprion_ocellaris
WBGene00012964	Y48A6B.3	81	46.212	ENSAPEG00000008765	nhp2	91	46.809	Amphiprion_percula
WBGene00012964	Y48A6B.3	78	49.606	ENSATEG00000009651	nhp2	97	46.405	Anabas_testudineus
WBGene00012964	Y48A6B.3	78	52.756	ENSACAG00000006692	NHP2	86	51.515	Anolis_carolinensis
WBGene00012964	Y48A6B.3	69	46.429	ENSANAG00000031552	-	88	46.429	Aotus_nancymaae
WBGene00012964	Y48A6B.3	78	51.181	ENSANAG00000023290	NHP2	82	51.181	Aotus_nancymaae
WBGene00012964	Y48A6B.3	78	46.457	ENSACLG00000001082	nhp2	92	47.222	Astatotilapia_calliptera
WBGene00012964	Y48A6B.3	78	50.394	ENSAMXG00000005845	nhp2	83	50.394	Astyanax_mexicanus
WBGene00012964	Y48A6B.3	87	48.592	ENSBTAG00000006374	NHP2	90	48.592	Bos_taurus
WBGene00012964	Y48A6B.3	85	49.640	ENSCJAG00000038564	-	90	49.640	Callithrix_jacchus
WBGene00012964	Y48A6B.3	98	43.125	ENSCJAG00000023093	-	99	43.125	Callithrix_jacchus
WBGene00012964	Y48A6B.3	88	44.667	ENSCAFG00000000240	NHP2	97	44.667	Canis_familiaris
WBGene00012964	Y48A6B.3	87	48.592	ENSCHIG00000015159	NHP2	90	48.592	Capra_hircus
WBGene00012964	Y48A6B.3	78	40.945	ENSTSYG00000008150	NHP2	79	40.945	Carlito_syrichta
WBGene00012964	Y48A6B.3	97	43.671	ENSCPOG00000033753	NHP2	97	43.671	Cavia_porcellus
WBGene00012964	Y48A6B.3	78	51.181	ENSCCAG00000034815	NHP2	82	51.181	Cebus_capucinus
WBGene00012964	Y48A6B.3	69	48.214	ENSCCAG00000034664	-	78	48.214	Cebus_capucinus
WBGene00012964	Y48A6B.3	88	42.361	ENSCCAG00000027964	-	97	42.361	Cebus_capucinus
WBGene00012964	Y48A6B.3	98	44.375	ENSCATG00000043608	NHP2	99	44.375	Cercocebus_atys
WBGene00012964	Y48A6B.3	78	48.819	ENSCLAG00000016005	NHP2	82	48.819	Chinchilla_lanigera
WBGene00012964	Y48A6B.3	98	44.375	ENSCSAG00000008690	NHP2	99	44.375	Chlorocebus_sabaeus
WBGene00012964	Y48A6B.3	87	48.592	ENSCHOG00000013038	NHP2	90	48.592	Choloepus_hoffmanni
WBGene00012964	Y48A6B.3	79	49.612	ENSCPBG00000022106	NHP2	85	49.612	Chrysemys_picta_bellii
WBGene00012964	Y48A6B.3	85	42.029	ENSCSAVG00000008036	-	90	42.029	Ciona_savignyi
WBGene00012964	Y48A6B.3	73	50.420	ENSCANG00000038441	-	76	53.704	Colobus_angolensis_palliatus
WBGene00012964	Y48A6B.3	97	44.937	ENSCANG00000031562	NHP2	97	44.937	Colobus_angolensis_palliatus
WBGene00012964	Y48A6B.3	88	46.853	ENSCGRG00001005326	Nhp2	91	46.853	Cricetulus_griseus_chok1gshd
WBGene00012964	Y48A6B.3	88	46.853	ENSCGRG00000013680	Nhp2	91	46.853	Cricetulus_griseus_crigri
WBGene00012964	Y48A6B.3	91	45.638	ENSCSEG00000006761	nhp2	95	46.309	Cynoglossus_semilaevis
WBGene00012964	Y48A6B.3	87	45.775	ENSDARG00000069422	nhp2	93	47.183	Danio_rerio
WBGene00012964	Y48A6B.3	78	52.756	ENSDNOG00000017150	NHP2	78	52.756	Dasypus_novemcinctus
WBGene00012964	Y48A6B.3	97	44.937	ENSDORG00000003312	Nhp2	97	44.937	Dipodomys_ordii
WBGene00012964	Y48A6B.3	98	47.531	FBgn0029148	NHP2	99	47.531	Drosophila_melanogaster
WBGene00012964	Y48A6B.3	87	49.296	ENSETEG00000006774	NHP2	90	49.296	Echinops_telfairi
WBGene00012964	Y48A6B.3	78	50.394	ENSEASG00005012569	NHP2	82	50.394	Equus_asinus_asinus
WBGene00012964	Y48A6B.3	82	49.254	ENSECAG00000022963	NHP2	75	49.254	Equus_caballus
WBGene00012964	Y48A6B.3	66	43.119	ENSELUG00000021981	nhp2	93	43.119	Esox_lucius
WBGene00012964	Y48A6B.3	78	50.394	ENSFCAG00000015541	NHP2	82	50.394	Felis_catus
WBGene00012964	Y48A6B.3	79	47.287	ENSFALG00000008774	NHP2	80	47.287	Ficedula_albicollis
WBGene00012964	Y48A6B.3	97	42.405	ENSFDAG00000008131	NHP2	97	42.405	Fukomys_damarensis
WBGene00012964	Y48A6B.3	78	48.031	ENSFHEG00000000431	nhp2	81	48.819	Fundulus_heteroclitus
WBGene00012964	Y48A6B.3	79	50.000	ENSGMOG00000000278	nhp2	87	48.872	Gadus_morhua
WBGene00012964	Y48A6B.3	77	50.400	ENSGALG00000033666	NHP2	74	50.400	Gallus_gallus
WBGene00012964	Y48A6B.3	78	51.181	ENSGAFG00000009838	nhp2	89	46.939	Gambusia_affinis
WBGene00012964	Y48A6B.3	75	52.033	ENSGACG00000020889	nhp2	90	50.360	Gasterosteus_aculeatus
WBGene00012964	Y48A6B.3	55	55.056	ENSGAGG00000006901	NHP2	70	55.056	Gopherus_agassizii
WBGene00012964	Y48A6B.3	80	43.077	ENSGGOG00000027198	-	88	43.077	Gorilla_gorilla
WBGene00012964	Y48A6B.3	80	43.077	ENSGGOG00000040409	-	88	43.077	Gorilla_gorilla
WBGene00012964	Y48A6B.3	78	46.457	ENSHBUG00000010207	nhp2	92	47.917	Haplochromis_burtoni
WBGene00012964	Y48A6B.3	74	45.833	ENSHGLG00000014450	-	83	45.833	Heterocephalus_glaber_female
WBGene00012964	Y48A6B.3	78	51.181	ENSHGLG00000013630	NHP2	82	51.181	Heterocephalus_glaber_female
WBGene00012964	Y48A6B.3	78	51.181	ENSHGLG00100007298	NHP2	82	51.181	Heterocephalus_glaber_male
WBGene00012964	Y48A6B.3	74	45.833	ENSHGLG00100003440	-	83	45.833	Heterocephalus_glaber_male
WBGene00012964	Y48A6B.3	74	45.833	ENSHGLG00100005282	-	83	45.833	Heterocephalus_glaber_male
WBGene00012964	Y48A6B.3	94	44.516	ENSHCOG00000019552	nhp2	97	44.516	Hippocampus_comes
WBGene00012964	Y48A6B.3	94	45.752	ENSIPUG00000024197	NHP2	97	45.752	Ictalurus_punctatus
WBGene00012964	Y48A6B.3	78	50.394	ENSSTOG00000003235	NHP2	82	50.394	Ictidomys_tridecemlineatus
WBGene00012964	Y48A6B.3	78	51.181	ENSJJAG00000016469	Nhp2	90	48.551	Jaculus_jaculus
WBGene00012964	Y48A6B.3	94	43.791	ENSLBEG00000002128	nhp2	97	46.405	Labrus_bergylta
WBGene00012964	Y48A6B.3	91	47.651	ENSLACG00000017167	NHP2	94	47.651	Latimeria_chalumnae
WBGene00012964	Y48A6B.3	81	49.242	ENSLOCG00000009630	nhp2	88	49.242	Lepisosteus_oculatus
WBGene00012964	Y48A6B.3	78	49.606	ENSLAFG00000012828	NHP2	82	49.606	Loxodonta_africana
WBGene00012964	Y48A6B.3	98	44.375	ENSMFAG00000032376	NHP2	99	44.375	Macaca_fascicularis
WBGene00012964	Y48A6B.3	87	36.879	ENSMMUG00000046673	-	98	36.879	Macaca_mulatta
WBGene00012964	Y48A6B.3	98	44.375	ENSMNEG00000038787	NHP2	99	44.375	Macaca_nemestrina
WBGene00012964	Y48A6B.3	98	44.375	ENSMLEG00000028639	NHP2	99	44.375	Mandrillus_leucophaeus
WBGene00012964	Y48A6B.3	94	46.405	ENSMAMG00000022425	nhp2	97	47.059	Mastacembelus_armatus
WBGene00012964	Y48A6B.3	78	46.457	ENSMZEG00005027834	nhp2	92	47.222	Maylandia_zebra
WBGene00012964	Y48A6B.3	54	48.864	ENSMGAG00000003917	NHP2	88	48.864	Meleagris_gallopavo
WBGene00012964	Y48A6B.3	78	50.394	ENSMICG00000005379	NHP2	82	50.394	Microcebus_murinus
WBGene00012964	Y48A6B.3	81	49.242	ENSMOCG00000022171	Nhp2	86	49.242	Microtus_ochrogaster
WBGene00012964	Y48A6B.3	78	48.031	ENSMMOG00000016811	nhp2	97	44.444	Mola_mola
WBGene00012964	Y48A6B.3	79	48.062	ENSMODG00000004231	NHP2	83	48.062	Monodelphis_domestica
WBGene00012964	Y48A6B.3	88	48.611	ENSMALG00000009613	nhp2	92	49.306	Monopterus_albus
WBGene00012964	Y48A6B.3	88	46.853	MGP_CAROLIEiJ_G0016312	Nhp2	91	46.853	Mus_caroli
WBGene00012964	Y48A6B.3	88	46.853	ENSMUSG00000001056	Nhp2	91	46.853	Mus_musculus
WBGene00012964	Y48A6B.3	88	46.853	MGP_PahariEiJ_G0017447	Nhp2	91	46.853	Mus_pahari
WBGene00012964	Y48A6B.3	88	46.853	MGP_SPRETEiJ_G0017156	Nhp2	91	46.853	Mus_spretus
WBGene00012964	Y48A6B.3	87	48.592	ENSMPUG00000000747	NHP2	90	48.592	Mustela_putorius_furo
WBGene00012964	Y48A6B.3	78	51.181	ENSMLUG00000003377	NHP2	82	51.181	Myotis_lucifugus
WBGene00012964	Y48A6B.3	88	47.917	ENSNGAG00000021818	Nhp2	94	47.917	Nannospalax_galili
WBGene00012964	Y48A6B.3	78	47.244	ENSNBRG00000018016	nhp2	92	48.611	Neolamprologus_brichardi
WBGene00012964	Y48A6B.3	88	42.667	ENSNLEG00000015765	NHP2	97	42.667	Nomascus_leucogenys
WBGene00012964	Y48A6B.3	79	47.287	ENSMEUG00000003839	NHP2	83	47.287	Notamacropus_eugenii
WBGene00012964	Y48A6B.3	87	37.324	ENSOPRG00000007907	NHP2	90	37.324	Ochotona_princeps
WBGene00012964	Y48A6B.3	78	48.819	ENSODEG00000006948	NHP2	82	48.819	Octodon_degus
WBGene00012964	Y48A6B.3	78	48.031	ENSONIG00000017865	nhp2	92	49.306	Oreochromis_niloticus
WBGene00012964	Y48A6B.3	87	48.592	ENSOCUG00000016091	-	90	48.592	Oryctolagus_cuniculus
WBGene00012964	Y48A6B.3	87	48.592	ENSOCUG00000016057	-	90	48.592	Oryctolagus_cuniculus
WBGene00012964	Y48A6B.3	73	52.941	ENSORLG00000029195	nhp2	78	52.941	Oryzias_latipes
WBGene00012964	Y48A6B.3	73	52.941	ENSORLG00020003277	nhp2	78	52.941	Oryzias_latipes_hni
WBGene00012964	Y48A6B.3	73	52.941	ENSORLG00015007851	nhp2	84	51.304	Oryzias_latipes_hsok
WBGene00012964	Y48A6B.3	78	49.606	ENSOMEG00000017381	nhp2	74	49.606	Oryzias_melastigma
WBGene00012964	Y48A6B.3	78	50.000	ENSOGAG00000016108	NHP2	83	50.000	Otolemur_garnettii
WBGene00012964	Y48A6B.3	87	43.662	ENSOARG00000006274	NHP2	89	43.662	Ovis_aries
WBGene00012964	Y48A6B.3	98	44.375	ENSPPAG00000028668	NHP2	99	44.375	Pan_paniscus
WBGene00012964	Y48A6B.3	78	43.307	ENSPPAG00000038834	-	86	43.307	Pan_paniscus
WBGene00012964	Y48A6B.3	78	50.394	ENSPPRG00000022505	NHP2	82	50.394	Panthera_pardus
WBGene00012964	Y48A6B.3	55	48.889	ENSPTIG00000021731	NHP2	78	46.939	Panthera_tigris_altaica
WBGene00012964	Y48A6B.3	81	42.424	ENSPTRG00000049011	-	91	42.424	Pan_troglodytes
WBGene00012964	Y48A6B.3	81	42.424	ENSPTRG00000050430	-	91	42.424	Pan_troglodytes
WBGene00012964	Y48A6B.3	97	44.937	ENSPTRG00000048185	NHP2	97	44.937	Pan_troglodytes
WBGene00012964	Y48A6B.3	98	44.375	ENSPANG00000019121	NHP2	99	44.375	Papio_anubis
WBGene00012964	Y48A6B.3	81	50.000	ENSPKIG00000006410	nhp2	97	48.366	Paramormyrops_kingsleyae
WBGene00012964	Y48A6B.3	78	48.819	ENSPMGG00000002916	nhp2	77	48.819	Periophthalmus_magnuspinnatus
WBGene00012964	Y48A6B.3	88	47.552	ENSPEMG00000023567	Nhp2	91	47.552	Peromyscus_maniculatus_bairdii
WBGene00012964	Y48A6B.3	94	40.523	ENSPMAG00000009888	nhp2	97	40.523	Petromyzon_marinus
WBGene00012964	Y48A6B.3	65	44.340	ENSPCIG00000019848	-	88	44.340	Phascolarctos_cinereus
WBGene00012964	Y48A6B.3	79	47.287	ENSPCIG00000002727	-	83	47.287	Phascolarctos_cinereus
WBGene00012964	Y48A6B.3	78	49.606	ENSPFOG00000002315	nhp2	81	49.606	Poecilia_formosa
WBGene00012964	Y48A6B.3	78	49.606	ENSPLAG00000019287	nhp2	81	49.606	Poecilia_latipinna
WBGene00012964	Y48A6B.3	78	49.606	ENSPMEG00000024346	nhp2	81	49.606	Poecilia_mexicana
WBGene00012964	Y48A6B.3	66	45.370	ENSPREG00000005005	nhp2	91	45.370	Poecilia_reticulata
WBGene00012964	Y48A6B.3	79	50.388	ENSPPYG00000016105	NHP2	84	50.388	Pongo_abelii
WBGene00012964	Y48A6B.3	78	50.394	ENSPCOG00000020708	NHP2	82	50.394	Propithecus_coquereli
WBGene00012964	Y48A6B.3	85	47.482	ENSPVAG00000001647	NHP2	90	47.482	Pteropus_vampyrus
WBGene00012964	Y48A6B.3	78	46.457	ENSPNYG00000022418	nhp2	92	47.917	Pundamilia_nyererei
WBGene00012964	Y48A6B.3	78	49.606	ENSPNAG00000013779	nhp2	83	49.606	Pygocentrus_nattereri
WBGene00012964	Y48A6B.3	88	47.552	ENSRNOG00000049622	LOC103690013	91	47.552	Rattus_norvegicus
WBGene00012964	Y48A6B.3	64	48.571	ENSRNOG00000004247	Nhp2	86	48.571	Rattus_norvegicus
WBGene00012964	Y48A6B.3	98	44.375	ENSRBIG00000018610	NHP2	99	44.375	Rhinopithecus_bieti
WBGene00012964	Y48A6B.3	88	38.889	ENSRROG00000044295	-	97	38.889	Rhinopithecus_roxellana
WBGene00012964	Y48A6B.3	98	44.375	ENSRROG00000043373	NHP2	99	44.375	Rhinopithecus_roxellana
WBGene00012964	Y48A6B.3	79	41.429	YDL208W	-	89	41.429	Saccharomyces_cerevisiae
WBGene00012964	Y48A6B.3	78	51.181	ENSSBOG00000027889	NHP2	82	51.181	Saimiri_boliviensis_boliviensis
WBGene00012964	Y48A6B.3	79	48.062	ENSSHAG00000015581	NHP2	83	48.062	Sarcophilus_harrisii
WBGene00012964	Y48A6B.3	91	49.324	ENSSFOG00015017061	nhp2	93	49.324	Scleropages_formosus
WBGene00012964	Y48A6B.3	78	49.606	ENSSMAG00000011251	nhp2	91	47.826	Scophthalmus_maximus
WBGene00012964	Y48A6B.3	87	49.645	ENSSDUG00000023355	nhp2	91	50.355	Seriola_dumerili
WBGene00012964	Y48A6B.3	83	48.148	ENSSPUG00000005173	NHP2	88	48.148	Sphenodon_punctatus
WBGene00012964	Y48A6B.3	88	44.755	ENSSPAG00000011696	nhp2	92	45.455	Stegastes_partitus
WBGene00012964	Y48A6B.3	64	45.192	ENSSSCG00000009710	-	73	45.192	Sus_scrofa
WBGene00012964	Y48A6B.3	87	48.592	ENSSSCG00000039635	-	78	48.592	Sus_scrofa
WBGene00012964	Y48A6B.3	55	51.685	ENSTGUG00000000368	NHP2	84	49.495	Taeniopygia_guttata
WBGene00012964	Y48A6B.3	78	48.819	ENSTRUG00000008183	nhp2	79	48.819	Takifugu_rubripes
WBGene00012964	Y48A6B.3	78	44.275	ENSTNIG00000004219	nhp2	93	40.000	Tetraodon_nigroviridis
WBGene00012964	Y48A6B.3	78	50.394	ENSUAMG00000025154	NHP2	82	50.394	Ursus_americanus
WBGene00012964	Y48A6B.3	87	47.518	ENSUMAG00000023916	NHP2	90	47.518	Ursus_maritimus
WBGene00012964	Y48A6B.3	67	49.541	ENSVPAG00000010059	NHP2	94	49.541	Vicugna_pacos
WBGene00012964	Y48A6B.3	78	42.484	ENSVVUG00000001030	NHP2	85	42.484	Vulpes_vulpes
WBGene00012964	Y48A6B.3	83	47.794	ENSXETG00000006731	nhp2	91	47.794	Xenopus_tropicalis
WBGene00012964	Y48A6B.3	78	51.181	ENSXMAG00000007031	nhp2	89	46.939	Xiphophorus_maculatus