EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00012978 (Gene tree)
Gene ID: -
Gene Symbol: Y48B6A.1
Alias: -
Full Name: Ribosome biogenesis protein BOP1 homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 3334 bases
Position: chrII:14151040-14154373
Accession: Q9U2A9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48B6A	BOP1NT	PF08145.12	3e-105	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48B6A.1	-	2340	NM_064555	Y48B6A.1	674 (aa)	NP_496956	Q9U2A9

Gene Model

Click here to download WBGene00012978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012978's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012978	Y48B6A.1	93	47.013	ENSG00000261236	BOP1	78	53.254	Homo_sapiens
WBGene00012978	Y48B6A.1	93	48.125	ENSAPOG00000019208	bop1	95	47.335	Acanthochromis_polyacanthus
WBGene00012978	Y48B6A.1	93	46.429	ENSAMEG00000005886	BOP1	89	46.429	Ailuropoda_melanoleuca
WBGene00012978	Y48B6A.1	92	48.408	ENSACIG00000007313	bop1	88	47.634	Amphilophus_citrinellus
WBGene00012978	Y48B6A.1	93	48.125	ENSAOCG00000016222	bop1	85	48.125	Amphiprion_ocellaris
WBGene00012978	Y48B6A.1	93	47.969	ENSAPEG00000018843	bop1	85	47.969	Amphiprion_percula
WBGene00012978	Y48B6A.1	93	48.513	ENSATEG00000010331	bop1	90	46.497	Anabas_testudineus
WBGene00012978	Y48B6A.1	84	45.833	ENSAPLG00000008324	BOP1	100	45.833	Anas_platyrhynchos
WBGene00012978	Y48B6A.1	93	46.855	ENSANAG00000035474	BOP1	84	46.855	Aotus_nancymaae
WBGene00012978	Y48B6A.1	93	48.513	ENSACLG00000005923	bop1	98	48.513	Astatotilapia_calliptera
WBGene00012978	Y48B6A.1	88	45.033	ENSAMXG00000011549	bop1	90	45.033	Astyanax_mexicanus
WBGene00012978	Y48B6A.1	93	47.087	ENSBTAG00000009811	BOP1	83	47.087	Bos_taurus
WBGene00012978	Y48B6A.1	87	46.037	ENSCJAG00000021437	BOP1	74	46.102	Callithrix_jacchus
WBGene00012978	Y48B6A.1	93	44.025	ENSCAFG00000001554	BOP1	84	44.025	Canis_familiaris
WBGene00012978	Y48B6A.1	93	44.409	ENSCHIG00000013489	BOP1	84	44.409	Capra_hircus
WBGene00012978	Y48B6A.1	93	47.484	ENSTSYG00000035588	BOP1	85	47.484	Carlito_syrichta
WBGene00012978	Y48B6A.1	94	47.812	ENSCAPG00000005636	BOP1	97	47.812	Cavia_aperea
WBGene00012978	Y48B6A.1	93	48.661	ENSCPOG00000005456	BOP1	85	48.661	Cavia_porcellus
WBGene00012978	Y48B6A.1	93	47.013	ENSCCAG00000028318	BOP1	84	47.013	Cebus_capucinus
WBGene00012978	Y48B6A.1	93	47.170	ENSCATG00000032450	BOP1	84	47.170	Cercocebus_atys
WBGene00012978	Y48B6A.1	93	48.976	ENSCLAG00000010297	BOP1	86	48.976	Chinchilla_lanigera
WBGene00012978	Y48B6A.1	93	47.013	ENSCSAG00000008653	BOP1	84	47.013	Chlorocebus_sabaeus
WBGene00012978	Y48B6A.1	93	49.211	ENSCPBG00000018884	BOP1	86	49.211	Chrysemys_picta_bellii
WBGene00012978	Y48B6A.1	93	43.268	ENSCING00000006069	-	88	43.570	Ciona_intestinalis
WBGene00012978	Y48B6A.1	93	44.921	ENSCSAVG00000006653	-	100	44.921	Ciona_savignyi
WBGene00012978	Y48B6A.1	93	46.855	ENSCANG00000038730	BOP1	85	46.855	Colobus_angolensis_palliatus
WBGene00012978	Y48B6A.1	91	47.191	ENSCGRG00001022601	BOP1	86	47.874	Cricetulus_griseus_chok1gshd
WBGene00012978	Y48B6A.1	91	47.191	ENSCGRG00000012159	Bop1	86	47.874	Cricetulus_griseus_crigri
WBGene00012978	Y48B6A.1	92	47.293	ENSCSEG00000018121	bop1	91	47.040	Cynoglossus_semilaevis
WBGene00012978	Y48B6A.1	93	48.598	ENSCVAG00000023063	bop1	82	48.598	Cyprinodon_variegatus
WBGene00012978	Y48B6A.1	93	48.980	ENSDARG00000063627	bop1	80	48.980	Danio_rerio
WBGene00012978	Y48B6A.1	93	46.835	ENSDNOG00000047347	BOP1	83	46.835	Dasypus_novemcinctus
WBGene00012978	Y48B6A.1	97	44.962	ENSDORG00000004860	Bop1	91	46.226	Dipodomys_ordii
WBGene00012978	Y48B6A.1	93	43.546	FBgn0028744	CG5033	81	43.546	Drosophila_melanogaster
WBGene00012978	Y48B6A.1	93	46.203	ENSEBUG00000003348	bop1	97	46.203	Eptatretus_burgeri
WBGene00012978	Y48B6A.1	93	47.799	ENSEASG00005010217	BOP1	85	47.799	Equus_asinus_asinus
WBGene00012978	Y48B6A.1	93	47.799	ENSECAG00000016440	BOP1	76	47.799	Equus_caballus
WBGene00012978	Y48B6A.1	76	47.801	ENSEEUG00000005437	BOP1	98	47.801	Erinaceus_europaeus
WBGene00012978	Y48B6A.1	93	49.216	ENSELUG00000022099	bop1	80	49.216	Esox_lucius
WBGene00012978	Y48B6A.1	93	46.772	ENSFCAG00000022942	BOP1	85	46.772	Felis_catus
WBGene00012978	Y48B6A.1	84	42.004	ENSFALG00000000360	BOP1	100	42.179	Ficedula_albicollis
WBGene00012978	Y48B6A.1	93	48.346	ENSFDAG00000015755	BOP1	89	48.346	Fukomys_damarensis
WBGene00012978	Y48B6A.1	82	44.920	ENSFHEG00000017233	bop1	92	45.276	Fundulus_heteroclitus
WBGene00012978	Y48B6A.1	91	45.120	ENSGMOG00000000569	bop1	100	45.120	Gadus_morhua
WBGene00012978	Y48B6A.1	92	47.840	ENSGALG00000053353	BOP1	88	48.504	Gallus_gallus
WBGene00012978	Y48B6A.1	93	47.799	ENSGAFG00000011248	bop1	87	47.528	Gambusia_affinis
WBGene00012978	Y48B6A.1	93	48.357	ENSGACG00000010420	bop1	99	47.181	Gasterosteus_aculeatus
WBGene00012978	Y48B6A.1	93	49.528	ENSGAGG00000012770	BOP1	86	49.528	Gopherus_agassizii
WBGene00012978	Y48B6A.1	93	47.013	ENSGGOG00000013590	BOP1	88	47.013	Gorilla_gorilla
WBGene00012978	Y48B6A.1	93	48.678	ENSHBUG00000013186	bop1	88	48.758	Haplochromis_burtoni
WBGene00012978	Y48B6A.1	93	48.346	ENSHGLG00000017934	BOP1	86	48.346	Heterocephalus_glaber_female
WBGene00012978	Y48B6A.1	93	48.346	ENSHGLG00100007897	BOP1	92	48.183	Heterocephalus_glaber_male
WBGene00012978	Y48B6A.1	93	46.708	ENSHCOG00000018713	bop1	86	46.708	Hippocampus_comes
WBGene00012978	Y48B6A.1	99	48.110	ENSIPUG00000012277	bop1	88	48.110	Ictalurus_punctatus
WBGene00012978	Y48B6A.1	93	47.402	ENSSTOG00000020925	BOP1	85	47.402	Ictidomys_tridecemlineatus
WBGene00012978	Y48B6A.1	91	46.549	ENSJJAG00000003954	Bop1	92	46.154	Jaculus_jaculus
WBGene00012978	Y48B6A.1	93	48.906	ENSKMAG00000001743	bop1	92	48.413	Kryptolebias_marmoratus
WBGene00012978	Y48B6A.1	93	48.983	ENSLBEG00000022444	bop1	83	48.983	Labrus_bergylta
WBGene00012978	Y48B6A.1	93	48.983	ENSLBEG00000023751	-	83	48.983	Labrus_bergylta
WBGene00012978	Y48B6A.1	93	49.291	ENSLACG00000013738	BOP1	83	49.291	Latimeria_chalumnae
WBGene00012978	Y48B6A.1	91	48.077	ENSLOCG00000007429	bop1	100	48.077	Lepisosteus_oculatus
WBGene00012978	Y48B6A.1	93	43.574	ENSLAFG00000000686	BOP1	92	44.375	Loxodonta_africana
WBGene00012978	Y48B6A.1	93	47.013	ENSMFAG00000031321	BOP1	87	47.013	Macaca_fascicularis
WBGene00012978	Y48B6A.1	93	47.013	ENSMMUG00000014724	BOP1	84	47.013	Macaca_mulatta
WBGene00012978	Y48B6A.1	93	39.403	ENSMNEG00000040269	BOP1	83	39.403	Macaca_nemestrina
WBGene00012978	Y48B6A.1	93	47.170	ENSMLEG00000039202	BOP1	88	47.170	Mandrillus_leucophaeus
WBGene00012978	Y48B6A.1	93	48.119	ENSMAMG00000022191	bop1	87	47.452	Mastacembelus_armatus
WBGene00012978	Y48B6A.1	93	48.513	ENSMZEG00005011990	bop1	88	48.513	Maylandia_zebra
WBGene00012978	Y48B6A.1	89	45.799	ENSMAUG00000012534	Bop1	88	45.526	Mesocricetus_auratus
WBGene00012978	Y48B6A.1	94	45.639	ENSMICG00000015653	BOP1	86	45.639	Microcebus_murinus
WBGene00012978	Y48B6A.1	91	47.512	ENSMOCG00000011668	Bop1	86	48.189	Microtus_ochrogaster
WBGene00012978	Y48B6A.1	92	47.368	ENSMMOG00000017547	bop1	88	47.276	Mola_mola
WBGene00012978	Y48B6A.1	94	48.050	ENSMODG00000010589	BOP1	78	48.050	Monodelphis_domestica
WBGene00012978	Y48B6A.1	93	48.131	ENSMALG00000011552	bop1	86	47.198	Monopterus_albus
WBGene00012978	Y48B6A.1	91	46.870	MGP_CAROLIEiJ_G0019928	Bop1	86	47.559	Mus_caroli
WBGene00012978	Y48B6A.1	91	46.870	ENSMUSG00000022557	Bop1	86	47.559	Mus_musculus
WBGene00012978	Y48B6A.1	91	47.512	MGP_PahariEiJ_G0019938	Bop1	86	48.189	Mus_pahari
WBGene00012978	Y48B6A.1	91	47.030	MGP_SPRETEiJ_G0020831	Bop1	97	53.896	Mus_spretus
WBGene00012978	Y48B6A.1	93	47.559	ENSMPUG00000006831	BOP1	86	47.559	Mustela_putorius_furo
WBGene00012978	Y48B6A.1	93	48.031	ENSMLUG00000030120	BOP1	88	48.031	Myotis_lucifugus
WBGene00012978	Y48B6A.1	92	46.720	ENSNGAG00000009053	Bop1	98	46.720	Nannospalax_galili
WBGene00012978	Y48B6A.1	91	46.044	ENSNBRG00000021004	bop1	88	46.044	Neolamprologus_brichardi
WBGene00012978	Y48B6A.1	91	46.635	ENSMEUG00000000450	BOP1	82	46.635	Notamacropus_eugenii
WBGene00012978	Y48B6A.1	93	49.291	ENSODEG00000013361	BOP1	87	49.291	Octodon_degus
WBGene00012978	Y48B6A.1	93	48.746	ENSONIG00000015336	bop1	88	48.834	Oreochromis_niloticus
WBGene00012978	Y48B6A.1	93	48.910	ENSORLG00000001674	bop1	85	49.065	Oryzias_latipes
WBGene00012978	Y48B6A.1	93	48.754	ENSORLG00020010315	bop1	85	48.910	Oryzias_latipes_hni
WBGene00012978	Y48B6A.1	93	49.221	ENSORLG00015017381	bop1	85	49.221	Oryzias_latipes_hsok
WBGene00012978	Y48B6A.1	93	49.844	ENSOMEG00000009341	bop1	85	49.844	Oryzias_melastigma
WBGene00012978	Y48B6A.1	93	46.457	ENSOGAG00000017175	BOP1	91	44.925	Otolemur_garnettii
WBGene00012978	Y48B6A.1	80	42.778	ENSOARG00000014255	BOP1	82	42.778	Ovis_aries
WBGene00012978	Y48B6A.1	93	46.855	ENSPPAG00000043028	BOP1	88	46.855	Pan_paniscus
WBGene00012978	Y48B6A.1	78	53.383	ENSPPRG00000008442	BOP1	80	53.383	Panthera_pardus
WBGene00012978	Y48B6A.1	93	46.855	ENSPTRG00000020690	BOP1	84	46.855	Pan_troglodytes
WBGene00012978	Y48B6A.1	93	47.170	ENSPANG00000024950	BOP1	84	47.170	Papio_anubis
WBGene00012978	Y48B6A.1	94	48.044	ENSPKIG00000020273	bop1	75	48.044	Paramormyrops_kingsleyae
WBGene00012978	Y48B6A.1	92	45.972	ENSPMGG00000023998	bop1	91	45.972	Periophthalmus_magnuspinnatus
WBGene00012978	Y48B6A.1	92	46.080	ENSPMAG00000004108	bop1	100	46.080	Petromyzon_marinus
WBGene00012978	Y48B6A.1	94	47.418	ENSPCIG00000009070	BOP1	84	47.418	Phascolarctos_cinereus
WBGene00012978	Y48B6A.1	93	47.731	ENSPFOG00000007988	bop1	84	47.738	Poecilia_formosa
WBGene00012978	Y48B6A.1	91	47.209	ENSPLAG00000006820	bop1	85	47.209	Poecilia_latipinna
WBGene00012978	Y48B6A.1	91	47.368	ENSPMEG00000015671	bop1	83	47.368	Poecilia_mexicana
WBGene00012978	Y48B6A.1	93	48.509	ENSPREG00000015440	bop1	84	48.598	Poecilia_reticulata
WBGene00012978	Y48B6A.1	83	45.599	ENSPPYG00000029621	-	98	45.599	Pongo_abelii
WBGene00012978	Y48B6A.1	97	44.781	ENSPCAG00000006873	BOP1	88	44.781	Procavia_capensis
WBGene00012978	Y48B6A.1	94	45.483	ENSPCOG00000023196	BOP1	86	45.483	Propithecus_coquereli
WBGene00012978	Y48B6A.1	92	48.254	ENSPNYG00000010914	bop1	91	48.331	Pundamilia_nyererei
WBGene00012978	Y48B6A.1	93	49.609	ENSPNAG00000008525	bop1	78	49.609	Pygocentrus_nattereri
WBGene00012978	Y48B6A.1	91	47.191	ENSRNOG00000021773	Bop1	88	47.385	Rattus_norvegicus
WBGene00012978	Y48B6A.1	93	47.170	ENSRBIG00000027555	BOP1	84	47.170	Rhinopithecus_bieti
WBGene00012978	Y48B6A.1	93	41.981	ENSRROG00000043244	BOP1	88	41.981	Rhinopithecus_roxellana
WBGene00012978	Y48B6A.1	94	39.327	YMR049C	-	83	39.680	Saccharomyces_cerevisiae
WBGene00012978	Y48B6A.1	93	47.170	ENSSBOG00000030140	BOP1	83	47.170	Saimiri_boliviensis_boliviensis
WBGene00012978	Y48B6A.1	92	47.049	ENSSHAG00000000887	BOP1	99	47.049	Sarcophilus_harrisii
WBGene00012978	Y48B6A.1	93	47.969	ENSSFOG00015010596	bop1	95	47.917	Scleropages_formosus
WBGene00012978	Y48B6A.1	92	48.738	ENSSMAG00000014623	bop1	84	48.830	Scophthalmus_maximus
WBGene00012978	Y48B6A.1	91	47.528	ENSSDUG00000021097	bop1	94	47.261	Seriola_dumerili
WBGene00012978	Y48B6A.1	92	48.661	ENSSLDG00000001209	bop1	95	47.574	Seriola_lalandi_dorsalis
WBGene00012978	Y48B6A.1	92	46.400	ENSSPUG00000017700	BOP1	94	45.920	Sphenodon_punctatus
WBGene00012978	Y48B6A.1	92	47.134	ENSSPAG00000013925	bop1	92	47.134	Stegastes_partitus
WBGene00012978	Y48B6A.1	93	47.244	ENSSSCG00000005920	BOP1	96	47.244	Sus_scrofa
WBGene00012978	Y48B6A.1	93	48.670	ENSTNIG00000018156	bop1	91	48.670	Tetraodon_nigroviridis
WBGene00012978	Y48B6A.1	81	48.678	ENSTTRG00000006423	BOP1	79	48.511	Tursiops_truncatus
WBGene00012978	Y48B6A.1	92	47.209	ENSVVUG00000007851	BOP1	91	47.209	Vulpes_vulpes
WBGene00012978	Y48B6A.1	92	46.582	ENSXCOG00000019431	bop1	88	46.582	Xiphophorus_couchianus