EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00012997 (Gene tree)
Gene ID: -
Gene Symbol: Y48C3A.18
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 2272 bases
Position: chrII:13412635-13414906
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48C3A	Sua5_yciO_yrdC	PF01300.18	7.7e-38	1	1
Y48C3A	Sua5_yciO_yrdC	PF01300.18	6e-25	1	1
Y48C3A	Sua5_yciO_yrdC	PF01300.18	1.7e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48C3A.18a	-	811	NM_064425	Y48C3A.18a	216 (aa)	NP_496826	Q9NAF8
Y48C3A.18c	-	532	-	Y48C3A.18c	119 (aa)	NP_001254385	G2HK06
Y48C3A.18b	-	624	-	Y48C3A.18b	143 (aa)	NP_001122661	A5HWA9

Gene Model

Click here to download WBGene00012997's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012997's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012997	Y48C3A.18	97	37.903	ENSG00000196449	YRDC	82	37.500	Homo_sapiens
WBGene00012997	Y48C3A.18	98	39.496	ENSAPOG00000024293	yrdc	79	37.156	Acanthochromis_polyacanthus
WBGene00012997	Y48C3A.18	97	38.710	ENSAMEG00000001173	YRDC	97	37.968	Ailuropoda_melanoleuca
WBGene00012997	Y48C3A.18	99	36.239	ENSACIG00000017330	yrdc	78	36.239	Amphilophus_citrinellus
WBGene00012997	Y48C3A.18	98	39.496	ENSAOCG00000021647	yrdc	79	37.615	Amphiprion_ocellaris
WBGene00012997	Y48C3A.18	98	39.496	ENSAPEG00000006164	yrdc	79	37.615	Amphiprion_percula
WBGene00012997	Y48C3A.18	99	37.156	ENSATEG00000010086	yrdc	78	37.156	Anabas_testudineus
WBGene00012997	Y48C3A.18	92	37.410	ENSACAG00000017203	YRDC	88	38.095	Anolis_carolinensis
WBGene00012997	Y48C3A.18	94	37.931	ENSANAG00000031052	-	75	37.736	Aotus_nancymaae
WBGene00012997	Y48C3A.18	97	38.710	ENSANAG00000028788	-	86	39.614	Aotus_nancymaae
WBGene00012997	Y48C3A.18	99	37.500	ENSACLG00000027775	yrdc	82	36.073	Astatotilapia_calliptera
WBGene00012997	Y48C3A.18	97	40.171	ENSAMXG00000037791	yrdc	75	38.693	Astyanax_mexicanus
WBGene00012997	Y48C3A.18	98	38.095	ENSBTAG00000006510	YRDC	83	39.056	Bos_taurus
WBGene00012997	Y48C3A.18	97	37.903	ENSCJAG00000002078	YRDC	63	37.500	Callithrix_jacchus
WBGene00012997	Y48C3A.18	97	36.885	ENSCAFG00000003253	YRDC	74	38.350	Canis_familiaris
WBGene00012997	Y48C3A.18	97	36.885	ENSCAFG00020007843	YRDC	74	38.835	Canis_lupus_dingo
WBGene00012997	Y48C3A.18	98	38.961	ENSCHIG00000007882	YRDC	83	38.961	Capra_hircus
WBGene00012997	Y48C3A.18	97	38.710	ENSTSYG00000005555	YRDC	59	38.824	Carlito_syrichta
WBGene00012997	Y48C3A.18	97	35.808	ENSCPOG00000036144	YRDC	81	35.808	Cavia_porcellus
WBGene00012997	Y48C3A.18	97	37.903	ENSCCAG00000028891	YRDC	82	37.500	Cebus_capucinus
WBGene00012997	Y48C3A.18	97	38.211	ENSCATG00000036928	YRDC	82	37.931	Cercocebus_atys
WBGene00012997	Y48C3A.18	97	35.833	ENSCLAG00000015012	YRDC	81	35.965	Chinchilla_lanigera
WBGene00012997	Y48C3A.18	97	38.211	ENSCSAG00000001116	YRDC	82	37.931	Chlorocebus_sabaeus
WBGene00012997	Y48C3A.18	68	37.423	ENSCHOG00000005500	YRDC	78	37.423	Choloepus_hoffmanni
WBGene00012997	Y48C3A.18	97	35.246	ENSCPBG00000018446	YRDC	88	38.647	Chrysemys_picta_bellii
WBGene00012997	Y48C3A.18	95	37.097	ENSCING00000007564	-	98	38.498	Ciona_intestinalis
WBGene00012997	Y48C3A.18	95	37.097	ENSCSAVG00000009982	-	98	37.089	Ciona_savignyi
WBGene00012997	Y48C3A.18	97	37.398	ENSCANG00000031111	YRDC	82	37.931	Colobus_angolensis_palliatus
WBGene00012997	Y48C3A.18	100	34.400	ENSCGRG00001000829	-	57	33.495	Cricetulus_griseus_chok1gshd
WBGene00012997	Y48C3A.18	100	36.000	ENSCGRG00001014496	-	83	36.481	Cricetulus_griseus_chok1gshd
WBGene00012997	Y48C3A.18	99	36.290	ENSCGRG00000001307	-	97	36.290	Cricetulus_griseus_crigri
WBGene00012997	Y48C3A.18	93	36.607	ENSCSEG00000019075	yrdc	74	35.961	Cynoglossus_semilaevis
WBGene00012997	Y48C3A.18	97	36.441	ENSCVAG00000017355	yrdc	82	35.023	Cyprinodon_variegatus
WBGene00012997	Y48C3A.18	97	38.462	ENSDARG00000041428	yrdc	94	35.586	Danio_rerio
WBGene00012997	Y48C3A.18	97	37.903	ENSDNOG00000038789	-	83	38.426	Dasypus_novemcinctus
WBGene00012997	Y48C3A.18	92	31.655	ENSDNOG00000036198	-	92	31.414	Dasypus_novemcinctus
WBGene00012997	Y48C3A.18	97	39.516	ENSDORG00000008788	Yrdc	84	40.933	Dipodomys_ordii
WBGene00012997	Y48C3A.18	100	33.065	FBgn0061361	CG33786	84	34.742	Drosophila_melanogaster
WBGene00012997	Y48C3A.18	97	31.466	ENSETEG00000003442	YRDC	81	31.466	Echinops_telfairi
WBGene00012997	Y48C3A.18	90	44.615	ENSEBUG00000014080	yrdc	78	43.386	Eptatretus_burgeri
WBGene00012997	Y48C3A.18	97	38.710	ENSEASG00005012253	YRDC	81	38.793	Equus_asinus_asinus
WBGene00012997	Y48C3A.18	97	38.710	ENSECAG00000022522	YRDC	81	38.793	Equus_caballus
WBGene00012997	Y48C3A.18	98	37.815	ENSELUG00000018071	yrdc	66	38.308	Esox_lucius
WBGene00012997	Y48C3A.18	97	39.516	ENSFCAG00000011018	YRDC	81	37.931	Felis_catus
WBGene00012997	Y48C3A.18	97	40.650	ENSFALG00000000964	YRDC	88	42.564	Ficedula_albicollis
WBGene00012997	Y48C3A.18	85	37.736	ENSFDAG00000016507	-	100	37.736	Fukomys_damarensis
WBGene00012997	Y48C3A.18	98	35.294	ENSFHEG00000001029	yrdc	77	34.314	Fundulus_heteroclitus
WBGene00012997	Y48C3A.18	97	37.607	ENSGMOG00000015635	yrdc	97	37.811	Gadus_morhua
WBGene00012997	Y48C3A.18	96	39.171	ENSGALG00000029001	YRDC	85	39.171	Gallus_gallus
WBGene00012997	Y48C3A.18	98	33.613	ENSGAFG00000008396	yrdc	76	34.975	Gambusia_affinis
WBGene00012997	Y48C3A.18	98	37.815	ENSGACG00000013878	yrdc	87	34.419	Gasterosteus_aculeatus
WBGene00012997	Y48C3A.18	97	36.066	ENSGAGG00000014968	YRDC	89	39.130	Gopherus_agassizii
WBGene00012997	Y48C3A.18	97	37.903	ENSGGOG00000007619	YRDC	82	37.500	Gorilla_gorilla
WBGene00012997	Y48C3A.18	99	38.333	ENSHBUG00000009298	yrdc	82	36.530	Haplochromis_burtoni
WBGene00012997	Y48C3A.18	97	36.842	ENSHGLG00000014075	YRDC	81	36.842	Heterocephalus_glaber_female
WBGene00012997	Y48C3A.18	97	36.667	ENSHGLG00100002734	YRDC	73	38.424	Heterocephalus_glaber_male
WBGene00012997	Y48C3A.18	97	38.983	ENSHCOG00000006598	yrdc	75	39.474	Hippocampus_comes
WBGene00012997	Y48C3A.18	97	36.752	ENSIPUG00000014985	yrdc	86	36.842	Ictalurus_punctatus
WBGene00012997	Y48C3A.18	97	38.710	ENSSTOG00000001643	YRDC	81	37.500	Ictidomys_tridecemlineatus
WBGene00012997	Y48C3A.18	85	40.741	ENSJJAG00000023117	-	100	40.741	Jaculus_jaculus
WBGene00012997	Y48C3A.18	98	36.134	ENSKMAG00000013468	yrdc	76	36.946	Kryptolebias_marmoratus
WBGene00012997	Y48C3A.18	98	37.815	ENSLBEG00000027501	yrdc	76	36.946	Labrus_bergylta
WBGene00012997	Y48C3A.18	94	35.294	ENSLACG00000010689	YRDC	93	37.255	Latimeria_chalumnae
WBGene00012997	Y48C3A.18	94	32.479	ENSLOCG00000003321	yrdc	84	35.294	Lepisosteus_oculatus
WBGene00012997	Y48C3A.18	97	37.903	ENSLAFG00000017556	YRDC	81	37.069	Loxodonta_africana
WBGene00012997	Y48C3A.18	97	38.211	ENSMFAG00000003487	YRDC	96	39.904	Macaca_fascicularis
WBGene00012997	Y48C3A.18	97	38.211	ENSMMUG00000005372	YRDC	61	37.931	Macaca_mulatta
WBGene00012997	Y48C3A.18	97	38.211	ENSMNEG00000029348	YRDC	82	37.931	Macaca_nemestrina
WBGene00012997	Y48C3A.18	97	38.211	ENSMLEG00000041122	YRDC	92	40.559	Mandrillus_leucophaeus
WBGene00012997	Y48C3A.18	97	37.288	ENSMAMG00000007315	yrdc	75	37.129	Mastacembelus_armatus
WBGene00012997	Y48C3A.18	99	37.500	ENSMZEG00005006948	yrdc	82	36.073	Maylandia_zebra
WBGene00012997	Y48C3A.18	97	37.190	ENSMGAG00000002833	YRDC	98	40.299	Meleagris_gallopavo
WBGene00012997	Y48C3A.18	85	37.736	ENSMAUG00000003715	-	100	37.736	Mesocricetus_auratus
WBGene00012997	Y48C3A.18	97	36.885	ENSMICG00000031688	YRDC	82	37.500	Microcebus_murinus
WBGene00012997	Y48C3A.18	60	38.636	ENSMOCG00000000164	-	61	35.897	Microtus_ochrogaster
WBGene00012997	Y48C3A.18	98	36.975	ENSMMOG00000002119	yrdc	77	36.453	Mola_mola
WBGene00012997	Y48C3A.18	93	38.983	ENSMODG00000017750	YRDC	72	39.806	Monodelphis_domestica
WBGene00012997	Y48C3A.18	97	40.171	ENSMALG00000012471	yrdc	77	38.806	Monopterus_albus
WBGene00012997	Y48C3A.18	90	37.089	MGP_CAROLIEiJ_G0026453	Yrdc	98	38.462	Mus_caroli
WBGene00012997	Y48C3A.18	100	37.600	ENSMUSG00000028889	Yrdc	100	39.623	Mus_musculus
WBGene00012997	Y48C3A.18	100	37.600	MGP_PahariEiJ_G0028784	Yrdc	100	39.623	Mus_pahari
WBGene00012997	Y48C3A.18	100	37.600	MGP_SPRETEiJ_G0027432	Yrdc	83	37.339	Mus_spretus
WBGene00012997	Y48C3A.18	97	38.710	ENSMPUG00000014542	YRDC	81	39.130	Mustela_putorius_furo
WBGene00012997	Y48C3A.18	97	38.211	ENSMLUG00000000955	-	81	37.662	Myotis_lucifugus
WBGene00012997	Y48C3A.18	92	39.568	ENSMLUG00000024310	-	94	37.436	Myotis_lucifugus
WBGene00012997	Y48C3A.18	93	32.203	ENSMLUG00000028796	-	71	33.168	Myotis_lucifugus
WBGene00012997	Y48C3A.18	100	37.008	ENSNGAG00000019099	Yrdc	75	38.318	Nannospalax_galili
WBGene00012997	Y48C3A.18	98	38.655	ENSNBRG00000009475	yrdc	82	36.697	Neolamprologus_brichardi
WBGene00012997	Y48C3A.18	97	37.903	ENSNLEG00000011665	YRDC	82	37.500	Nomascus_leucogenys
WBGene00012997	Y48C3A.18	97	39.837	ENSMEUG00000005068	YRDC	96	40.952	Notamacropus_eugenii
WBGene00012997	Y48C3A.18	97	37.500	ENSODEG00000007401	YRDC	100	39.623	Octodon_degus
WBGene00012997	Y48C3A.18	98	39.496	ENSONIG00000016213	yrdc	92	37.156	Oreochromis_niloticus
WBGene00012997	Y48C3A.18	92	40.171	ENSOANG00000002048	-	91	40.171	Ornithorhynchus_anatinus
WBGene00012997	Y48C3A.18	97	37.795	ENSOCUG00000005384	YRDC	78	37.021	Oryctolagus_cuniculus
WBGene00012997	Y48C3A.18	98	36.134	ENSORLG00000014393	yrdc	78	36.715	Oryzias_latipes
WBGene00012997	Y48C3A.18	98	36.134	ENSORLG00020019663	yrdc	78	36.715	Oryzias_latipes_hni
WBGene00012997	Y48C3A.18	98	36.134	ENSORLG00015004625	yrdc	78	36.232	Oryzias_latipes_hsok
WBGene00012997	Y48C3A.18	98	35.294	ENSOMEG00000018550	yrdc	78	35.784	Oryzias_melastigma
WBGene00012997	Y48C3A.18	95	37.168	ENSOGAG00000030474	YRDC	81	37.168	Otolemur_garnettii
WBGene00012997	Y48C3A.18	98	38.961	ENSOARG00000019873	YRDC	82	38.961	Ovis_aries
WBGene00012997	Y48C3A.18	97	37.903	ENSPPAG00000039722	-	93	39.860	Pan_paniscus
WBGene00012997	Y48C3A.18	97	39.516	ENSPPRG00000007752	YRDC	81	37.931	Panthera_pardus
WBGene00012997	Y48C3A.18	97	39.516	ENSPTIG00000019821	YRDC	58	41.429	Panthera_tigris_altaica
WBGene00012997	Y48C3A.18	97	37.903	ENSPTRG00000000557	YRDC	82	37.500	Pan_troglodytes
WBGene00012997	Y48C3A.18	97	38.211	ENSPANG00000006487	YRDC	61	37.931	Papio_anubis
WBGene00012997	Y48C3A.18	98	32.787	ENSPKIG00000004574	yrdc	76	33.810	Paramormyrops_kingsleyae
WBGene00012997	Y48C3A.18	97	37.705	ENSPSIG00000006483	YRDC	73	40.097	Pelodiscus_sinensis
WBGene00012997	Y48C3A.18	94	40.441	ENSPMGG00000004184	yrdc	72	40.000	Periophthalmus_magnuspinnatus
WBGene00012997	Y48C3A.18	95	38.028	ENSPEMG00000016985	Yrdc	74	36.257	Peromyscus_maniculatus_bairdii
WBGene00012997	Y48C3A.18	82	42.400	ENSPMAG00000002905	yrdc	96	38.333	Petromyzon_marinus
WBGene00012997	Y48C3A.18	97	39.024	ENSPCIG00000025731	YRDC	75	39.336	Phascolarctos_cinereus
WBGene00012997	Y48C3A.18	98	34.454	ENSPFOG00000023097	yrdc	81	34.259	Poecilia_formosa
WBGene00012997	Y48C3A.18	98	33.796	ENSPLAG00000020882	yrdc	81	33.796	Poecilia_latipinna
WBGene00012997	Y48C3A.18	98	34.454	ENSPMEG00000013237	yrdc	81	34.259	Poecilia_mexicana
WBGene00012997	Y48C3A.18	98	34.454	ENSPREG00000005285	yrdc	81	34.259	Poecilia_reticulata
WBGene00012997	Y48C3A.18	97	37.903	ENSPPYG00000001523	-	84	39.423	Pongo_abelii
WBGene00012997	Y48C3A.18	97	37.398	ENSPCAG00000016850	YRDC	73	39.614	Procavia_capensis
WBGene00012997	Y48C3A.18	97	38.710	ENSPCOG00000013214	YRDC	82	37.931	Propithecus_coquereli
WBGene00012997	Y48C3A.18	97	38.710	ENSPVAG00000010147	YRDC	82	37.500	Pteropus_vampyrus
WBGene00012997	Y48C3A.18	99	38.333	ENSPNYG00000013956	yrdc	82	36.530	Pundamilia_nyererei
WBGene00012997	Y48C3A.18	83	40.833	ENSPNAG00000015625	yrdc	76	37.297	Pygocentrus_nattereri
WBGene00012997	Y48C3A.18	100	38.400	ENSRNOG00000025424	Yrdc	83	37.768	Rattus_norvegicus
WBGene00012997	Y48C3A.18	97	37.398	ENSRBIG00000032289	YRDC	82	37.500	Rhinopithecus_bieti
WBGene00012997	Y48C3A.18	97	37.398	ENSRROG00000039370	YRDC	69	39.130	Rhinopithecus_roxellana
WBGene00012997	Y48C3A.18	97	37.903	ENSSBOG00000018937	YRDC	91	38.356	Saimiri_boliviensis_boliviensis
WBGene00012997	Y48C3A.18	91	43.066	ENSSHAG00000013957	-	91	43.066	Sarcophilus_harrisii
WBGene00012997	Y48C3A.18	93	39.130	ENSSFOG00015006128	yrdc	85	37.619	Scleropages_formosus
WBGene00012997	Y48C3A.18	98	37.815	ENSSMAG00000005195	yrdc	78	36.697	Scophthalmus_maximus
WBGene00012997	Y48C3A.18	70	30.303	ENSSDUG00000006631	-	64	30.303	Seriola_dumerili
WBGene00012997	Y48C3A.18	99	36.697	ENSSDUG00000009775	yrdc	77	36.697	Seriola_dumerili
WBGene00012997	Y48C3A.18	99	36.697	ENSSLDG00000003196	yrdc	77	36.697	Seriola_lalandi_dorsalis
WBGene00012997	Y48C3A.18	97	38.017	ENSSPUG00000003946	YRDC	82	38.028	Sphenodon_punctatus
WBGene00012997	Y48C3A.18	99	37.156	ENSSPAG00000012559	yrdc	78	37.156	Stegastes_partitus
WBGene00012997	Y48C3A.18	97	39.024	ENSSSCG00000040425	YRDC	81	37.662	Sus_scrofa
WBGene00012997	Y48C3A.18	97	40.650	ENSTGUG00000001507	YRDC	93	43.165	Taeniopygia_guttata
WBGene00012997	Y48C3A.18	93	35.714	ENSTRUG00000005923	yrdc	74	36.000	Takifugu_rubripes
WBGene00012997	Y48C3A.18	84	40.187	ENSTBEG00000008863	YRDC	96	39.216	Tupaia_belangeri
WBGene00012997	Y48C3A.18	100	37.302	ENSTTRG00000013538	-	96	40.000	Tursiops_truncatus
WBGene00012997	Y48C3A.18	97	38.710	ENSUAMG00000006150	YRDC	98	38.916	Ursus_americanus
WBGene00012997	Y48C3A.18	97	31.878	ENSVPAG00000006642	YRDC	97	31.878	Vicugna_pacos
WBGene00012997	Y48C3A.18	97	38.843	ENSXETG00000014420	yrdc	86	37.864	Xenopus_tropicalis
WBGene00012997	Y48C3A.18	98	34.259	ENSXCOG00000000829	yrdc	90	34.259	Xiphophorus_couchianus
WBGene00012997	Y48C3A.18	98	34.722	ENSXMAG00000014606	yrdc	76	34.722	Xiphophorus_maculatus