EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00012999 (Gene tree)
Gene ID: -
Gene Symbol: rpoa-1
Alias: -
Full Name: RNA POlymerase I (A) subunit
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 24155 bases
Position: chrII:13670633-13694787
Accession: G5EDG7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48E1A	RNA_pol_Rpb1_5	PF04998.17	2.2e-87	1	1
Y48E1A	RNA_pol_Rpb1_5	PF04998.17	4.1e-08	1	1
Y48E1A	RNA_pol_Rpb1_4	PF05000.17	2.9e-18	1	1
Y48E1A	RNA_pol_Rpb1_2	PF00623.20	7.6e-59	1	1
Y48E1A	RNA_pol_Rpb1_3	PF04983.18	2.8e-32	1	1
Y48E1A	RNA_pol_Rpb1_1	PF04997.12	3.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48E1A.1a	-	5394	NM_001027279	Y48E1A.1a	1737 (aa)	NP_001022450	G5ED21
Y48E1A.1b	-	808	-	Y48E1A.1b	120 (aa)	NP_001022451	G5EDG7

Gene Model

Click here to download WBGene00012999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00012999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00012999	rpoa-1	81	40.816	WBGene00000123	ama-1	54	45.455
WBGene00012999	rpoa-1	77	33.333	WBGene00004411	rpc-1	80	30.448

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00012999	rpoa-1	98	38.457	ENSG00000068654	POLR1A	99	38.715	Homo_sapiens
WBGene00012999	rpoa-1	69	38.250	ENSAPOG00000017945	polr1a	99	37.914	Acanthochromis_polyacanthus
WBGene00012999	rpoa-1	98	38.526	ENSAMEG00000005807	POLR1A	99	38.616	Ailuropoda_melanoleuca
WBGene00012999	rpoa-1	77	60.870	ENSACIG00000022147	polr1a	98	41.792	Amphilophus_citrinellus
WBGene00012999	rpoa-1	98	38.571	ENSAOCG00000017336	polr1a	97	40.957	Amphiprion_ocellaris
WBGene00012999	rpoa-1	98	38.514	ENSAPEG00000016105	polr1a	99	38.192	Amphiprion_percula
WBGene00012999	rpoa-1	98	38.019	ENSATEG00000016773	polr1a	99	37.955	Anabas_testudineus
WBGene00012999	rpoa-1	77	59.783	ENSAPLG00000013871	POLR1A	98	41.281	Anas_platyrhynchos
WBGene00012999	rpoa-1	98	38.357	ENSACAG00000012141	POLR1A	99	38.187	Anolis_carolinensis
WBGene00012999	rpoa-1	98	38.552	ENSANAG00000033927	POLR1A	99	38.793	Aotus_nancymaae
WBGene00012999	rpoa-1	77	59.783	ENSACLG00000020541	polr1a	93	41.940	Astatotilapia_calliptera
WBGene00012999	rpoa-1	98	38.328	ENSBTAG00000006481	POLR1A	99	38.715	Bos_taurus
WBGene00012999	rpoa-1	98	38.362	ENSCJAG00000019547	POLR1A	99	38.886	Callithrix_jacchus
WBGene00012999	rpoa-1	98	37.931	ENSCAFG00000007613	POLR1A	99	37.944	Canis_familiaris
WBGene00012999	rpoa-1	98	38.111	ENSCAFG00020014752	POLR1A	98	40.815	Canis_lupus_dingo
WBGene00012999	rpoa-1	98	38.523	ENSCHIG00000018204	POLR1A	99	38.626	Capra_hircus
WBGene00012999	rpoa-1	98	37.718	ENSTSYG00000002761	POLR1A	99	37.773	Carlito_syrichta
WBGene00012999	rpoa-1	77	56.522	ENSCAPG00000010132	POLR1A	98	39.369	Cavia_aperea
WBGene00012999	rpoa-1	98	38.301	ENSCPOG00000012350	POLR1A	99	38.973	Cavia_porcellus
WBGene00012999	rpoa-1	98	38.889	ENSCCAG00000019839	POLR1A	99	38.994	Cebus_capucinus
WBGene00012999	rpoa-1	98	38.237	ENSCATG00000029786	POLR1A	99	38.513	Cercocebus_atys
WBGene00012999	rpoa-1	98	38.488	ENSCLAG00000005187	POLR1A	99	38.543	Chinchilla_lanigera
WBGene00012999	rpoa-1	98	38.018	ENSCSAG00000016251	POLR1A	99	38.401	Chlorocebus_sabaeus
WBGene00012999	rpoa-1	77	59.783	ENSCPBG00000001115	POLR1A	99	38.682	Chrysemys_picta_bellii
WBGene00012999	rpoa-1	78	58.511	ENSCING00000007684	-	99	36.737	Ciona_intestinalis
WBGene00012999	rpoa-1	78	61.290	ENSCSAVG00000007184	-	99	39.342	Ciona_savignyi
WBGene00012999	rpoa-1	98	37.085	ENSCANG00000031785	POLR1A	99	37.205	Colobus_angolensis_palliatus
WBGene00012999	rpoa-1	98	37.268	ENSCGRG00001006651	Polr1a	99	37.535	Cricetulus_griseus_chok1gshd
WBGene00012999	rpoa-1	77	57.609	ENSCGRG00000010834	Polr1a	99	41.985	Cricetulus_griseus_crigri
WBGene00012999	rpoa-1	77	59.783	ENSCSEG00000020190	polr1a	99	39.345	Cynoglossus_semilaevis
WBGene00012999	rpoa-1	77	59.783	ENSCVAG00000020941	polr1a	99	38.739	Cyprinodon_variegatus
WBGene00012999	rpoa-1	98	37.770	ENSDARG00000098375	polr1a	98	40.000	Danio_rerio
WBGene00012999	rpoa-1	98	36.712	ENSDNOG00000010829	POLR1A	99	36.552	Dasypus_novemcinctus
WBGene00012999	rpoa-1	98	37.927	ENSDORG00000008298	Polr1a	99	38.483	Dipodomys_ordii
WBGene00012999	rpoa-1	78	55.914	FBgn0019938	RpI1	99	39.200	Drosophila_melanogaster
WBGene00012999	rpoa-1	68	36.388	ENSETEG00000000412	-	68	36.388	Echinops_telfairi
WBGene00012999	rpoa-1	77	55.435	ENSEBUG00000005667	-	95	38.440	Eptatretus_burgeri
WBGene00012999	rpoa-1	98	38.146	ENSEASG00005001625	POLR1A	97	40.766	Equus_asinus_asinus
WBGene00012999	rpoa-1	98	38.146	ENSECAG00000010092	POLR1A	97	40.761	Equus_caballus
WBGene00012999	rpoa-1	98	38.146	ENSECAG00000036306	-	97	40.761	Equus_caballus
WBGene00012999	rpoa-1	98	38.146	ENSECAG00000030510	-	97	40.761	Equus_caballus
WBGene00012999	rpoa-1	77	55.435	ENSEEUG00000000676	POLR1A	71	50.820	Erinaceus_europaeus
WBGene00012999	rpoa-1	98	38.300	ENSELUG00000012769	polr1a	96	40.756	Esox_lucius
WBGene00012999	rpoa-1	98	38.063	ENSFCAG00000008966	POLR1A	97	40.080	Felis_catus
WBGene00012999	rpoa-1	97	38.832	ENSFALG00000010082	POLR1A	99	39.377	Ficedula_albicollis
WBGene00012999	rpoa-1	98	38.453	ENSFDAG00000013726	POLR1A	99	38.470	Fukomys_damarensis
WBGene00012999	rpoa-1	77	58.696	ENSFHEG00000005996	polr1a	99	39.930	Fundulus_heteroclitus
WBGene00012999	rpoa-1	77	60.870	ENSGMOG00000002230	polr1a	94	41.697	Gadus_morhua
WBGene00012999	rpoa-1	77	59.783	ENSGALG00000050269	-	94	55.660	Gallus_gallus
WBGene00012999	rpoa-1	88	37.688	ENSGALG00000038160	-	98	38.077	Gallus_gallus
WBGene00012999	rpoa-1	98	38.739	ENSGAFG00000015266	polr1a	99	38.857	Gambusia_affinis
WBGene00012999	rpoa-1	98	39.110	ENSGACG00000018791	polr1a	99	39.053	Gasterosteus_aculeatus
WBGene00012999	rpoa-1	77	60.870	ENSGAGG00000004984	-	99	38.861	Gopherus_agassizii
WBGene00012999	rpoa-1	98	38.401	ENSGGOG00000001788	POLR1A	99	38.573	Gorilla_gorilla
WBGene00012999	rpoa-1	77	59.783	ENSHBUG00000020021	polr1a	92	45.542	Haplochromis_burtoni
WBGene00012999	rpoa-1	98	38.127	ENSHGLG00000006334	POLR1A	99	38.600	Heterocephalus_glaber_female
WBGene00012999	rpoa-1	98	38.245	ENSHGLG00100006614	POLR1A	99	38.717	Heterocephalus_glaber_male
WBGene00012999	rpoa-1	77	58.696	ENSHCOG00000003345	polr1a	95	41.278	Hippocampus_comes
WBGene00012999	rpoa-1	77	58.696	ENSIPUG00000013174	polr1a	99	37.879	Ictalurus_punctatus
WBGene00012999	rpoa-1	98	38.876	ENSSTOG00000012580	POLR1A	99	39.292	Ictidomys_tridecemlineatus
WBGene00012999	rpoa-1	98	38.418	ENSJJAG00000013113	Polr1a	99	38.466	Jaculus_jaculus
WBGene00012999	rpoa-1	98	38.892	ENSKMAG00000007399	polr1a	99	38.835	Kryptolebias_marmoratus
WBGene00012999	rpoa-1	77	58.696	ENSLBEG00000015401	polr1a	98	41.085	Labrus_bergylta
WBGene00012999	rpoa-1	54	36.608	ENSLACG00000003218	polr1a	99	36.815	Latimeria_chalumnae
WBGene00012999	rpoa-1	98	39.989	ENSLOCG00000010881	polr1a	99	40.104	Lepisosteus_oculatus
WBGene00012999	rpoa-1	98	38.492	ENSLAFG00000014948	POLR1A	99	38.682	Loxodonta_africana
WBGene00012999	rpoa-1	98	38.181	ENSMFAG00000046097	POLR1A	99	38.522	Macaca_fascicularis
WBGene00012999	rpoa-1	98	38.181	ENSMMUG00000015815	POLR1A	99	38.522	Macaca_mulatta
WBGene00012999	rpoa-1	98	38.012	ENSMNEG00000043313	POLR1A	99	38.354	Macaca_nemestrina
WBGene00012999	rpoa-1	98	38.055	ENSMLEG00000042428	POLR1A	99	38.397	Mandrillus_leucophaeus
WBGene00012999	rpoa-1	77	60.870	ENSMAMG00000016565	polr1a	99	37.907	Mastacembelus_armatus
WBGene00012999	rpoa-1	98	38.785	ENSMZEG00005004915	polr1a	99	38.588	Maylandia_zebra
WBGene00012999	rpoa-1	77	59.783	ENSMGAG00000013111	POLR1A	99	37.937	Meleagris_gallopavo
WBGene00012999	rpoa-1	77	57.609	ENSMAUG00000008497	Polr1a	97	39.413	Mesocricetus_auratus
WBGene00012999	rpoa-1	98	38.410	ENSMICG00000000757	POLR1A	99	38.436	Microcebus_murinus
WBGene00012999	rpoa-1	77	57.609	ENSMOCG00000000122	Polr1a	99	38.833	Microtus_ochrogaster
WBGene00012999	rpoa-1	77	59.783	ENSMMOG00000010216	polr1a	98	40.777	Mola_mola
WBGene00012999	rpoa-1	77	58.696	ENSMODG00000009335	POLR1A	99	37.340	Monodelphis_domestica
WBGene00012999	rpoa-1	98	38.264	ENSMALG00000013363	polr1a	99	38.182	Monopterus_albus
WBGene00012999	rpoa-1	98	38.561	MGP_CAROLIEiJ_G0028494	Polr1a	99	39.712	Mus_caroli
WBGene00012999	rpoa-1	98	38.695	ENSMUSG00000049553	Polr1a	99	39.370	Mus_musculus
WBGene00012999	rpoa-1	98	38.367	MGP_PahariEiJ_G0022230	Polr1a	99	40.079	Mus_pahari
WBGene00012999	rpoa-1	98	37.902	MGP_SPRETEiJ_G0029499	Polr1a	99	39.239	Mus_spretus
WBGene00012999	rpoa-1	98	37.999	ENSMPUG00000009135	POLR1A	99	38.316	Mustela_putorius_furo
WBGene00012999	rpoa-1	98	38.652	ENSMLUG00000015723	POLR1A	99	38.697	Myotis_lucifugus
WBGene00012999	rpoa-1	77	58.696	ENSNGAG00000017907	Polr1a	99	38.322	Nannospalax_galili
WBGene00012999	rpoa-1	77	59.783	ENSNBRG00000000519	polr1a	99	38.744	Neolamprologus_brichardi
WBGene00012999	rpoa-1	98	37.786	ENSNLEG00000002264	POLR1A	99	37.598	Nomascus_leucogenys
WBGene00012999	rpoa-1	77	58.696	ENSMEUG00000011665	-	68	54.918	Notamacropus_eugenii
WBGene00012999	rpoa-1	91	43.023	ENSOPRG00000008269	POLR1A	94	43.023	Ochotona_princeps
WBGene00012999	rpoa-1	98	37.993	ENSODEG00000003542	POLR1A	99	38.397	Octodon_degus
WBGene00012999	rpoa-1	77	58.696	ENSONIG00000015895	polr1a	99	38.085	Oreochromis_niloticus
WBGene00012999	rpoa-1	77	56.989	ENSOANG00000000237	-	99	36.437	Ornithorhynchus_anatinus
WBGene00012999	rpoa-1	98	38.600	ENSOCUG00000010138	POLR1A	99	38.757	Oryctolagus_cuniculus
WBGene00012999	rpoa-1	98	38.405	ENSORLG00000008753	polr1a	99	38.353	Oryzias_latipes
WBGene00012999	rpoa-1	77	58.696	ENSORLG00020020726	polr1a	95	41.164	Oryzias_latipes_hni
WBGene00012999	rpoa-1	77	58.696	ENSORLG00015016071	polr1a	96	40.761	Oryzias_latipes_hsok
WBGene00012999	rpoa-1	98	38.453	ENSOGAG00000004031	POLR1A	99	38.220	Otolemur_garnettii
WBGene00012999	rpoa-1	98	37.788	ENSOARG00000020601	POLR1A	99	38.668	Ovis_aries
WBGene00012999	rpoa-1	98	38.178	ENSPPAG00000042450	POLR1A	99	38.350	Pan_paniscus
WBGene00012999	rpoa-1	98	37.985	ENSPPRG00000006702	POLR1A	97	40.147	Panthera_pardus
WBGene00012999	rpoa-1	98	37.801	ENSPTIG00000018783	POLR1A	97	39.920	Panthera_tigris_altaica
WBGene00012999	rpoa-1	98	38.212	ENSPTRG00000012147	POLR1A	99	38.440	Pan_troglodytes
WBGene00012999	rpoa-1	98	38.181	ENSPANG00000025908	POLR1A	99	38.457	Papio_anubis
WBGene00012999	rpoa-1	98	39.966	ENSPKIG00000005468	polr1a	97	43.165	Paramormyrops_kingsleyae
WBGene00012999	rpoa-1	77	60.870	ENSPSIG00000009321	-	99	40.588	Pelodiscus_sinensis
WBGene00012999	rpoa-1	56	38.086	ENSPMGG00000009718	polr1a	92	43.920	Periophthalmus_magnuspinnatus
WBGene00012999	rpoa-1	98	38.522	ENSPEMG00000022224	Polr1a	99	39.099	Peromyscus_maniculatus_bairdii
WBGene00012999	rpoa-1	93	37.692	ENSPCIG00000004222	POLR1A	99	37.854	Phascolarctos_cinereus
WBGene00012999	rpoa-1	98	38.873	ENSPFOG00000005025	polr1a	99	38.876	Poecilia_formosa
WBGene00012999	rpoa-1	98	38.848	ENSPLAG00000021389	polr1a	99	39.076	Poecilia_latipinna
WBGene00012999	rpoa-1	77	58.696	ENSPMEG00000006463	polr1a	97	41.189	Poecilia_mexicana
WBGene00012999	rpoa-1	98	38.693	ENSPREG00000002389	polr1a	95	43.651	Poecilia_reticulata
WBGene00012999	rpoa-1	98	38.298	ENSPPYG00000012217	POLR1A	99	38.239	Pongo_abelii
WBGene00012999	rpoa-1	71	40.783	ENSPCAG00000011582	POLR1A	75	40.783	Procavia_capensis
WBGene00012999	rpoa-1	98	37.821	ENSPCOG00000026987	POLR1A	99	38.260	Propithecus_coquereli
WBGene00012999	rpoa-1	77	56.522	ENSPVAG00000012674	POLR1A	93	40.145	Pteropus_vampyrus
WBGene00012999	rpoa-1	98	38.842	ENSPNYG00000000026	polr1a	99	38.644	Pundamilia_nyererei
WBGene00012999	rpoa-1	77	58.696	ENSPNAG00000019223	polr1a	99	38.345	Pygocentrus_nattereri
WBGene00012999	rpoa-1	98	38.908	ENSRNOG00000009545	Polr1a	99	38.901	Rattus_norvegicus
WBGene00012999	rpoa-1	98	38.138	ENSRBIG00000028335	POLR1A	99	38.239	Rhinopithecus_bieti
WBGene00012999	rpoa-1	98	38.194	ENSRROG00000031473	POLR1A	99	38.294	Rhinopithecus_roxellana
WBGene00012999	rpoa-1	78	52.688	YOR341W	RPA190	98	33.578	Saccharomyces_cerevisiae
WBGene00012999	rpoa-1	98	38.587	ENSSBOG00000030262	POLR1A	99	38.861	Saimiri_boliviensis_boliviensis
WBGene00012999	rpoa-1	77	58.696	ENSSHAG00000014739	POLR1A	99	36.237	Sarcophilus_harrisii
WBGene00012999	rpoa-1	98	39.209	ENSSFOG00015019716	polr1a	98	41.661	Scleropages_formosus
WBGene00012999	rpoa-1	98	38.752	ENSSMAG00000014342	polr1a	99	40.336	Scophthalmus_maximus
WBGene00012999	rpoa-1	98	38.431	ENSSDUG00000014631	polr1a	99	38.488	Seriola_dumerili
WBGene00012999	rpoa-1	77	58.696	ENSSLDG00000024095	polr1a	98	41.252	Seriola_lalandi_dorsalis
WBGene00012999	rpoa-1	68	72.500	ENSSARG00000003136	-	71	72.500	Sorex_araneus
WBGene00012999	rpoa-1	91	48.438	ENSSPUG00000004215	POLR1A	96	48.438	Sphenodon_punctatus
WBGene00012999	rpoa-1	62	41.695	ENSSPAG00000016341	polr1a	95	41.356	Stegastes_partitus
WBGene00012999	rpoa-1	83	38.705	ENSSSCG00000008226	POLR1A	99	38.114	Sus_scrofa
WBGene00012999	rpoa-1	97	38.758	ENSTGUG00000010704	POLR1A	99	39.013	Taeniopygia_guttata
WBGene00012999	rpoa-1	98	38.158	ENSTRUG00000002210	polr1a	99	38.523	Takifugu_rubripes
WBGene00012999	rpoa-1	77	58.696	ENSTNIG00000010116	polr1a	99	35.730	Tetraodon_nigroviridis
WBGene00012999	rpoa-1	56	58.209	ENSTNIG00000002230	-	99	43.455	Tetraodon_nigroviridis
WBGene00012999	rpoa-1	61	44.934	ENSTBEG00000008646	POLR1A	64	44.934	Tupaia_belangeri
WBGene00012999	rpoa-1	98	36.282	ENSTTRG00000008597	POLR1A	99	36.977	Tursiops_truncatus
WBGene00012999	rpoa-1	77	57.609	ENSUAMG00000012158	-	94	42.407	Ursus_americanus
WBGene00012999	rpoa-1	98	37.817	ENSUMAG00000006700	POLR1A	99	40.311	Ursus_maritimus
WBGene00012999	rpoa-1	98	37.732	ENSVVUG00000001245	POLR1A	97	40.027	Vulpes_vulpes
WBGene00012999	rpoa-1	77	59.783	ENSXETG00000001952	polr1a	99	36.659	Xenopus_tropicalis
WBGene00012999	rpoa-1	98	39.312	ENSXMAG00000004032	polr1a	99	39.312	Xiphophorus_maculatus