EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00013160 (Gene tree)
Gene ID: -
Gene Symbol: Y53F4B.13
Alias: -
Full Name: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 11671 bases
Position: chrII:15026137-15037807
Accession: Q9NAA5
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y53F4B	FtsJ	PF01728.19	8.2e-36	1	1
Y53F4B	FtsJ	PF01728.19	8.9e-36	1	1
Y53F4B	FtsJ	PF01728.19	1.8e-35	1	1
Y53F4B	FtsJ	PF01728.19	3e-32	1	1
Y53F4B	G-patch	PF01585.23	2e-12	1	1
Y53F4B	G-patch	PF01585.23	2.1e-12	1	1
Y53F4B	G-patch	PF01585.23	6.8e-12	1	1
Y53F4B	G-patch	PF01585.23	7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y53F4B.13d	-	1801	NM_001267531	Y53F4B.13d	594 (aa)	NP_001254460	UPI000252D1C0
Y53F4B.13c	-	1864	NM_001267530	Y53F4B.13c	615 (aa)	NP_001254459	UPI000252D1BD
Y53F4B.13b	-	3485	NM_001267529	Y53F4B.13b	897 (aa)	NP_001254458	UPI000252D1BF
Y53F4B.13a	-	3210	NM_001267528	Y53F4B.13a	918 (aa)	NP_001254457	Q9NAA5

Gene Model

Click here to download WBGene00013160's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013160's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013160	Y53F4B.13	85	42.533	ENSG00000137200	CMTR1	75	58.537	Homo_sapiens
WBGene00013160	Y53F4B.13	80	44.167	ENSAPOG00000006151	cmtr1	78	38.497	Acanthochromis_polyacanthus
WBGene00013160	Y53F4B.13	80	45.417	ENSAMEG00000015322	CMTR1	71	38.767	Ailuropoda_melanoleuca
WBGene00013160	Y53F4B.13	80	45.208	ENSACIG00000005878	cmtr1	74	36.546	Amphilophus_citrinellus
WBGene00013160	Y53F4B.13	80	44.167	ENSAOCG00000010042	cmtr1	83	36.850	Amphiprion_ocellaris
WBGene00013160	Y53F4B.13	80	44.167	ENSAPEG00000005034	cmtr1	80	36.850	Amphiprion_percula
WBGene00013160	Y53F4B.13	84	43.888	ENSATEG00000010704	cmtr1	80	38.222	Anabas_testudineus
WBGene00013160	Y53F4B.13	80	45.000	ENSAPLG00000014262	CMTR1	86	36.247	Anas_platyrhynchos
WBGene00013160	Y53F4B.13	80	45.625	ENSACAG00000014369	CMTR1	85	36.951	Anolis_carolinensis
WBGene00013160	Y53F4B.13	85	42.533	ENSANAG00000020879	CMTR1	83	36.814	Aotus_nancymaae
WBGene00013160	Y53F4B.13	80	44.375	ENSACLG00000015901	cmtr1	81	36.820	Astatotilapia_calliptera
WBGene00013160	Y53F4B.13	52	53.614	ENSAMXG00000012891	cmtr1	64	44.138	Astyanax_mexicanus
WBGene00013160	Y53F4B.13	83	43.822	ENSBTAG00000017091	CMTR1	83	37.299	Bos_taurus
WBGene00013160	Y53F4B.13	85	42.533	ENSCJAG00000005567	CMTR1	83	36.814	Callithrix_jacchus
WBGene00013160	Y53F4B.13	80	45.833	ENSCAFG00000001477	CMTR1	82	37.012	Canis_familiaris
WBGene00013160	Y53F4B.13	80	45.833	ENSCAFG00020007413	CMTR1	81	47.558	Canis_lupus_dingo
WBGene00013160	Y53F4B.13	80	46.042	ENSCHIG00000024476	CMTR1	82	37.082	Capra_hircus
WBGene00013160	Y53F4B.13	80	46.250	ENSTSYG00000001508	CMTR1	82	37.012	Carlito_syrichta
WBGene00013160	Y53F4B.13	80	46.250	ENSCAPG00000009501	CMTR1	83	37.550	Cavia_aperea
WBGene00013160	Y53F4B.13	80	46.250	ENSCPOG00000010298	CMTR1	83	37.135	Cavia_porcellus
WBGene00013160	Y53F4B.13	87	41.304	ENSCCAG00000033509	CMTR1	92	36.721	Cebus_capucinus
WBGene00013160	Y53F4B.13	85	42.533	ENSCATG00000043987	CMTR1	83	37.082	Cercocebus_atys
WBGene00013160	Y53F4B.13	80	46.667	ENSCLAG00000012181	CMTR1	83	37.351	Chinchilla_lanigera
WBGene00013160	Y53F4B.13	85	42.533	ENSCSAG00000010493	CMTR1	83	37.082	Chlorocebus_sabaeus
WBGene00013160	Y53F4B.13	80	43.750	ENSCHOG00000004736	CMTR1	85	37.788	Choloepus_hoffmanni
WBGene00013160	Y53F4B.13	80	45.000	ENSCPBG00000025335	CMTR1	83	36.449	Chrysemys_picta_bellii
WBGene00013160	Y53F4B.13	80	42.500	ENSCING00000024328	-	86	34.966	Ciona_intestinalis
WBGene00013160	Y53F4B.13	85	42.533	ENSCANG00000019286	CMTR1	83	37.082	Colobus_angolensis_palliatus
WBGene00013160	Y53F4B.13	80	46.458	ENSCGRG00001022818	Cmtr1	83	37.216	Cricetulus_griseus_chok1gshd
WBGene00013160	Y53F4B.13	80	46.458	ENSCGRG00000014364	Cmtr1	83	37.216	Cricetulus_griseus_crigri
WBGene00013160	Y53F4B.13	80	46.042	ENSCSEG00000020697	cmtr1	88	35.256	Cynoglossus_semilaevis
WBGene00013160	Y53F4B.13	85	42.802	ENSCVAG00000021132	cmtr1	87	35.815	Cyprinodon_variegatus
WBGene00013160	Y53F4B.13	82	46.341	ENSDARG00000030830	cmtr1	90	36.462	Danio_rerio
WBGene00013160	Y53F4B.13	80	46.458	ENSDNOG00000048634	CMTR1	86	36.765	Dasypus_novemcinctus
WBGene00013160	Y53F4B.13	85	41.966	ENSDORG00000005445	Cmtr1	88	36.207	Dipodomys_ordii
WBGene00013160	Y53F4B.13	84	42.857	FBgn0029693	CG6379	61	42.857	Drosophila_melanogaster
WBGene00013160	Y53F4B.13	80	37.292	ENSETEG00000003670	CMTR1	82	30.956	Echinops_telfairi
WBGene00013160	Y53F4B.13	92	40.357	ENSEBUG00000007471	cmtr1	93	34.662	Eptatretus_burgeri
WBGene00013160	Y53F4B.13	80	46.250	ENSEASG00005021434	CMTR1	83	37.082	Equus_asinus_asinus
WBGene00013160	Y53F4B.13	80	46.042	ENSECAG00000014822	CMTR1	81	47.558	Equus_caballus
WBGene00013160	Y53F4B.13	69	44.316	ENSEEUG00000008073	CMTR1	71	37.054	Erinaceus_europaeus
WBGene00013160	Y53F4B.13	80	45.625	ENSELUG00000004404	cmtr1	76	39.482	Esox_lucius
WBGene00013160	Y53F4B.13	80	45.625	ENSFCAG00000006744	CMTR1	80	47.301	Felis_catus
WBGene00013160	Y53F4B.13	80	44.375	ENSFALG00000011244	CMTR1	82	36.327	Ficedula_albicollis
WBGene00013160	Y53F4B.13	85	42.722	ENSFDAG00000013513	CMTR1	84	36.870	Fukomys_damarensis
WBGene00013160	Y53F4B.13	84	43.687	ENSFHEG00000001086	cmtr1	91	35.453	Fundulus_heteroclitus
WBGene00013160	Y53F4B.13	80	44.720	ENSGMOG00000014482	cmtr1	84	36.352	Gadus_morhua
WBGene00013160	Y53F4B.13	80	45.208	ENSGALG00000010149	CMTR1	76	36.104	Gallus_gallus
WBGene00013160	Y53F4B.13	88	42.015	ENSGAFG00000010629	cmtr1	87	34.704	Gambusia_affinis
WBGene00013160	Y53F4B.13	80	43.958	ENSGACG00000011365	cmtr1	74	38.779	Gasterosteus_aculeatus
WBGene00013160	Y53F4B.13	80	45.417	ENSGAGG00000023136	CMTR1	83	36.716	Gopherus_agassizii
WBGene00013160	Y53F4B.13	85	42.533	ENSGGOG00000005640	CMTR1	83	37.082	Gorilla_gorilla
WBGene00013160	Y53F4B.13	80	44.375	ENSHBUG00000010146	cmtr1	81	36.820	Haplochromis_burtoni
WBGene00013160	Y53F4B.13	85	43.100	ENSHGLG00000019562	CMTR1	83	36.821	Heterocephalus_glaber_female
WBGene00013160	Y53F4B.13	85	42.911	ENSHGLG00100009312	CMTR1	84	36.870	Heterocephalus_glaber_male
WBGene00013160	Y53F4B.13	86	42.197	ENSHCOG00000011866	cmtr1	88	35.475	Hippocampus_comes
WBGene00013160	Y53F4B.13	80	46.458	ENSIPUG00000012160	cmtr1	83	37.317	Ictalurus_punctatus
WBGene00013160	Y53F4B.13	80	46.042	ENSSTOG00000016546	CMTR1	83	36.546	Ictidomys_tridecemlineatus
WBGene00013160	Y53F4B.13	85	42.911	ENSJJAG00000018982	Cmtr1	87	36.573	Jaculus_jaculus
WBGene00013160	Y53F4B.13	80	44.375	ENSKMAG00000011344	cmtr1	87	35.393	Kryptolebias_marmoratus
WBGene00013160	Y53F4B.13	80	43.750	ENSLBEG00000021019	cmtr1	89	34.910	Labrus_bergylta
WBGene00013160	Y53F4B.13	79	44.186	ENSLACG00000006958	CMTR1	80	38.474	Latimeria_chalumnae
WBGene00013160	Y53F4B.13	79	42.373	ENSLOCG00000017052	cmtr1	91	34.320	Lepisosteus_oculatus
WBGene00013160	Y53F4B.13	80	46.250	ENSLAFG00000017287	CMTR1	86	39.478	Loxodonta_africana
WBGene00013160	Y53F4B.13	85	42.533	ENSMFAG00000002390	CMTR1	83	37.082	Macaca_fascicularis
WBGene00013160	Y53F4B.13	85	42.533	ENSMMUG00000011573	CMTR1	75	58.537	Macaca_mulatta
WBGene00013160	Y53F4B.13	85	42.533	ENSMNEG00000039572	CMTR1	83	37.082	Macaca_nemestrina
WBGene00013160	Y53F4B.13	85	41.588	ENSMLEG00000037397	CMTR1	83	36.412	Mandrillus_leucophaeus
WBGene00013160	Y53F4B.13	80	44.583	ENSMAMG00000020706	cmtr1	83	37.012	Mastacembelus_armatus
WBGene00013160	Y53F4B.13	80	44.375	ENSMZEG00005017018	cmtr1	81	36.820	Maylandia_zebra
WBGene00013160	Y53F4B.13	80	45.000	ENSMGAG00000010739	CMTR1	86	35.917	Meleagris_gallopavo
WBGene00013160	Y53F4B.13	80	46.667	ENSMICG00000003366	CMTR1	83	37.401	Microcebus_murinus
WBGene00013160	Y53F4B.13	80	41.042	ENSMOCG00000014109	Cmtr1	82	33.333	Microtus_ochrogaster
WBGene00013160	Y53F4B.13	80	40.625	ENSMMOG00000015984	cmtr1	91	32.573	Mola_mola
WBGene00013160	Y53F4B.13	75	44.789	ENSMALG00000003836	cmtr1	82	35.135	Monopterus_albus
WBGene00013160	Y53F4B.13	80	46.250	MGP_CAROLIEiJ_G0021350	Cmtr1	85	36.753	Mus_caroli
WBGene00013160	Y53F4B.13	80	46.250	ENSMUSG00000024019	Cmtr1	99	50.282	Mus_musculus
WBGene00013160	Y53F4B.13	80	46.250	MGP_PahariEiJ_G0023669	Cmtr1	85	36.753	Mus_pahari
WBGene00013160	Y53F4B.13	80	46.458	MGP_SPRETEiJ_G0022264	Cmtr1	85	36.883	Mus_spretus
WBGene00013160	Y53F4B.13	80	45.625	ENSMPUG00000013910	CMTR1	82	36.878	Mustela_putorius_furo
WBGene00013160	Y53F4B.13	84	42.262	ENSMLUG00000024254	-	83	35.436	Myotis_lucifugus
WBGene00013160	Y53F4B.13	80	45.833	ENSMLUG00000006730	-	83	36.680	Myotis_lucifugus
WBGene00013160	Y53F4B.13	80	45.625	ENSNGAG00000010259	Cmtr1	82	36.828	Nannospalax_galili
WBGene00013160	Y53F4B.13	80	44.375	ENSNBRG00000017272	cmtr1	96	32.681	Neolamprologus_brichardi
WBGene00013160	Y53F4B.13	85	42.533	ENSNLEG00000011192	CMTR1	92	36.948	Nomascus_leucogenys
WBGene00013160	Y53F4B.13	80	46.250	ENSOPRG00000012930	CMTR1	83	37.567	Ochotona_princeps
WBGene00013160	Y53F4B.13	80	45.625	ENSODEG00000017441	CMTR1	83	36.702	Octodon_degus
WBGene00013160	Y53F4B.13	80	44.375	ENSONIG00000013469	cmtr1	81	37.326	Oreochromis_niloticus
WBGene00013160	Y53F4B.13	80	44.375	ENSOANG00000013822	CMTR1	83	35.674	Ornithorhynchus_anatinus
WBGene00013160	Y53F4B.13	80	46.458	ENSOCUG00000008098	CMTR1	77	39.785	Oryctolagus_cuniculus
WBGene00013160	Y53F4B.13	80	44.375	ENSORLG00000013819	cmtr1	88	34.620	Oryzias_latipes
WBGene00013160	Y53F4B.13	80	44.375	ENSORLG00020012086	cmtr1	87	35.666	Oryzias_latipes_hni
WBGene00013160	Y53F4B.13	80	44.375	ENSORLG00015006909	cmtr1	88	34.620	Oryzias_latipes_hsok
WBGene00013160	Y53F4B.13	80	45.000	ENSOMEG00000008016	cmtr1	88	35.339	Oryzias_melastigma
WBGene00013160	Y53F4B.13	80	46.458	ENSOGAG00000000916	CMTR1	82	37.082	Otolemur_garnettii
WBGene00013160	Y53F4B.13	80	46.042	ENSOARG00000014698	CMTR1	82	37.082	Ovis_aries
WBGene00013160	Y53F4B.13	85	42.533	ENSPPAG00000035778	CMTR1	83	37.082	Pan_paniscus
WBGene00013160	Y53F4B.13	81	45.567	ENSPPRG00000022660	CMTR1	82	37.281	Panthera_pardus
WBGene00013160	Y53F4B.13	81	45.567	ENSPTIG00000020536	CMTR1	82	37.281	Panthera_tigris_altaica
WBGene00013160	Y53F4B.13	85	42.533	ENSPTRG00000018122	CMTR1	83	37.082	Pan_troglodytes
WBGene00013160	Y53F4B.13	85	42.533	ENSPANG00000021276	CMTR1	83	37.082	Papio_anubis
WBGene00013160	Y53F4B.13	80	45.417	ENSPKIG00000005638	cmtr1	83	36.779	Paramormyrops_kingsleyae
WBGene00013160	Y53F4B.13	80	45.000	ENSPSIG00000018204	CMTR1	86	36.658	Pelodiscus_sinensis
WBGene00013160	Y53F4B.13	79	43.856	ENSPMGG00000008947	cmtr1	77	37.750	Periophthalmus_magnuspinnatus
WBGene00013160	Y53F4B.13	80	46.250	ENSPEMG00000006218	Cmtr1	83	37.082	Peromyscus_maniculatus_bairdii
WBGene00013160	Y53F4B.13	80	44.513	ENSPMAG00000005418	cmtr1	88	35.984	Petromyzon_marinus
WBGene00013160	Y53F4B.13	80	45.417	ENSPCIG00000024459	CMTR1	82	37.231	Phascolarctos_cinereus
WBGene00013160	Y53F4B.13	88	42.395	ENSPFOG00000001587	cmtr1	87	35.347	Poecilia_formosa
WBGene00013160	Y53F4B.13	88	42.205	ENSPLAG00000015883	cmtr1	87	35.219	Poecilia_latipinna
WBGene00013160	Y53F4B.13	88	42.395	ENSPMEG00000014227	cmtr1	87	35.347	Poecilia_mexicana
WBGene00013160	Y53F4B.13	88	42.205	ENSPREG00000001500	cmtr1	87	35.401	Poecilia_reticulata
WBGene00013160	Y53F4B.13	85	42.533	ENSPPYG00000016562	CMTR1	83	37.082	Pongo_abelii
WBGene00013160	Y53F4B.13	80	46.331	ENSPCOG00000022141	CMTR1	92	36.906	Propithecus_coquereli
WBGene00013160	Y53F4B.13	80	43.542	ENSPVAG00000016511	CMTR1	82	35.532	Pteropus_vampyrus
WBGene00013160	Y53F4B.13	80	44.375	ENSPNYG00000009903	cmtr1	81	36.541	Pundamilia_nyererei
WBGene00013160	Y53F4B.13	86	42.235	ENSPNAG00000028223	cmtr1	85	35.515	Pygocentrus_nattereri
WBGene00013160	Y53F4B.13	80	45.625	ENSRNOG00000000532	Cmtr1	82	36.474	Rattus_norvegicus
WBGene00013160	Y53F4B.13	85	42.533	ENSRBIG00000027057	CMTR1	83	37.082	Rhinopithecus_bieti
WBGene00013160	Y53F4B.13	85	42.533	ENSRROG00000025840	CMTR1	83	37.082	Rhinopithecus_roxellana
WBGene00013160	Y53F4B.13	85	42.533	ENSSBOG00000031128	CMTR1	83	36.814	Saimiri_boliviensis_boliviensis
WBGene00013160	Y53F4B.13	80	45.549	ENSSHAG00000015917	CMTR1	82	37.483	Sarcophilus_harrisii
WBGene00013160	Y53F4B.13	80	46.473	ENSSFOG00015016868	cmtr1	75	39.970	Scleropages_formosus
WBGene00013160	Y53F4B.13	86	43.520	ENSSMAG00000014027	cmtr1	78	38.784	Scophthalmus_maximus
WBGene00013160	Y53F4B.13	80	44.583	ENSSDUG00000016830	cmtr1	87	35.211	Seriola_dumerili
WBGene00013160	Y53F4B.13	80	44.583	ENSSLDG00000006047	cmtr1	92	34.788	Seriola_lalandi_dorsalis
WBGene00013160	Y53F4B.13	79	45.073	ENSSARG00000005374	CMTR1	92	34.571	Sorex_araneus
WBGene00013160	Y53F4B.13	80	44.583	ENSSPUG00000017427	CMTR1	91	35.815	Sphenodon_punctatus
WBGene00013160	Y53F4B.13	80	44.167	ENSSPAG00000007506	cmtr1	80	37.693	Stegastes_partitus
WBGene00013160	Y53F4B.13	59	52.432	ENSSSCG00000001579	CMTR1	81	41.765	Sus_scrofa
WBGene00013160	Y53F4B.13	80	45.000	ENSTGUG00000007924	CMTR1	82	36.871	Taeniopygia_guttata
WBGene00013160	Y53F4B.13	80	44.583	ENSTRUG00000014780	cmtr1	83	36.743	Takifugu_rubripes
WBGene00013160	Y53F4B.13	80	45.417	ENSTNIG00000012235	cmtr1	82	45.833	Tetraodon_nigroviridis
WBGene00013160	Y53F4B.13	62	42.991	ENSTBEG00000012457	CMTR1	66	42.991	Tupaia_belangeri
WBGene00013160	Y53F4B.13	80	46.042	ENSTTRG00000002801	CMTR1	83	37.082	Tursiops_truncatus
WBGene00013160	Y53F4B.13	80	45.833	ENSUAMG00000027934	CMTR1	86	36.740	Ursus_americanus
WBGene00013160	Y53F4B.13	80	45.661	ENSUMAG00000009577	CMTR1	91	36.421	Ursus_maritimus
WBGene00013160	Y53F4B.13	80	44.583	ENSVPAG00000003389	CMTR1	65	44.792	Vicugna_pacos
WBGene00013160	Y53F4B.13	80	45.833	ENSVVUG00000026447	CMTR1	82	37.012	Vulpes_vulpes
WBGene00013160	Y53F4B.13	70	46.539	ENSXETG00000009964	cmtr1	76	36.533	Xenopus_tropicalis
WBGene00013160	Y53F4B.13	88	42.045	ENSXCOG00000004583	cmtr1	87	34.833	Xiphophorus_couchianus
WBGene00013160	Y53F4B.13	88	41.856	ENSXMAG00000007486	cmtr1	90	34.872	Xiphophorus_maculatus