EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00013189 (Gene tree)
Gene ID: -
Gene Symbol: Y54E2A.4
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 23528 bases
Position: chrII:14754622-14778149
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y54E2A	ResIII	PF04851.15	8.1e-27	1	2
Y54E2A	ResIII	PF04851.15	8.1e-27	2	2
Y54E2A	ResIII	PF04851.15	1.5e-10	1	1
Y54E2A	DEAD	PF00270.29	4.1e-51	1	2
Y54E2A	DEAD	PF00270.29	4.1e-51	2	2
Y54E2A	DEAD	PF00270.29	2.6e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y54E2A.4c	-	1845	NM_001306607	Y54E2A.4c	476 (aa)	NP_001293536	U4PDW0
Y54E2A.4b	-	4312	NM_001306606	Y54E2A.4b	1299 (aa)	NP_001293535	U4PQS1
Y54E2A.4a	-	6513	NM_064659	Y54E2A.4a	2017 (aa)	NP_497060	Q9XWI1

Gene Model

Click here to download WBGene00013189's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013189's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00013189	Y54E2A.4	99	32.597	WBGene00012896	snrp-200	87	34.864

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013189	Y54E2A.4	99	45.310	ENSG00000112249	ASCC3	88	47.170	Homo_sapiens
WBGene00013189	Y54E2A.4	99	44.344	ENSAMEG00000014749	ASCC3	88	46.751	Ailuropoda_melanoleuca
WBGene00013189	Y54E2A.4	98	45.007	ENSACIG00000004551	ascc3	91	45.161	Amphilophus_citrinellus
WBGene00013189	Y54E2A.4	99	44.815	ENSAOCG00000005106	ascc3	91	46.049	Amphiprion_ocellaris
WBGene00013189	Y54E2A.4	99	44.815	ENSAPEG00000006181	ascc3	93	46.346	Amphiprion_percula
WBGene00013189	Y54E2A.4	100	45.283	ENSATEG00000024950	ascc3	88	46.420	Anabas_testudineus
WBGene00013189	Y54E2A.4	99	44.962	ENSAPLG00000012589	-	99	47.269	Anas_platyrhynchos
WBGene00013189	Y54E2A.4	99	45.365	ENSACAG00000010080	ASCC3	88	47.190	Anolis_carolinensis
WBGene00013189	Y54E2A.4	99	45.310	ENSANAG00000021476	ASCC3	88	47.173	Aotus_nancymaae
WBGene00013189	Y54E2A.4	100	44.453	ENSACLG00000006736	ascc3	96	46.835	Astatotilapia_calliptera
WBGene00013189	Y54E2A.4	100	42.189	ENSAMXG00000001395	ascc3	87	44.754	Astyanax_mexicanus
WBGene00013189	Y54E2A.4	99	44.796	ENSBTAG00000020482	ASCC3	88	47.128	Bos_taurus
WBGene00013189	Y54E2A.4	99	45.135	ENSCJAG00000001507	ASCC3	87	50.337	Callithrix_jacchus
WBGene00013189	Y54E2A.4	99	44.545	ENSCAFG00000003554	ASCC3	88	46.891	Canis_familiaris
WBGene00013189	Y54E2A.4	99	44.545	ENSCAFG00020016899	ASCC3	88	46.840	Canis_lupus_dingo
WBGene00013189	Y54E2A.4	99	44.947	ENSCHIG00000023605	ASCC3	88	47.080	Capra_hircus
WBGene00013189	Y54E2A.4	85	49.394	ENSTSYG00000006324	ASCC3	87	50.031	Carlito_syrichta
WBGene00013189	Y54E2A.4	86	49.046	ENSCAPG00000010888	ASCC3	88	49.046	Cavia_aperea
WBGene00013189	Y54E2A.4	99	44.958	ENSCPOG00000013989	ASCC3	88	46.897	Cavia_porcellus
WBGene00013189	Y54E2A.4	99	45.310	ENSCCAG00000024230	ASCC3	88	47.224	Cebus_capucinus
WBGene00013189	Y54E2A.4	99	45.455	ENSCATG00000011281	ASCC3	88	47.170	Cercocebus_atys
WBGene00013189	Y54E2A.4	99	45.083	ENSCLAG00000009794	ASCC3	88	47.032	Chinchilla_lanigera
WBGene00013189	Y54E2A.4	99	45.530	ENSCSAG00000014674	ASCC3	88	47.221	Chlorocebus_sabaeus
WBGene00013189	Y54E2A.4	84	45.920	ENSCHOG00000002063	ASCC3	63	50.814	Choloepus_hoffmanni
WBGene00013189	Y54E2A.4	99	45.256	ENSCPBG00000003881	ASCC3	88	47.499	Chrysemys_picta_bellii
WBGene00013189	Y54E2A.4	99	45.068	ENSCSAVG00000007670	-	99	57.477	Ciona_savignyi
WBGene00013189	Y54E2A.4	99	45.530	ENSCANG00000004215	ASCC3	88	47.170	Colobus_angolensis_palliatus
WBGene00013189	Y54E2A.4	99	45.386	ENSCGRG00001000918	Ascc3	88	47.041	Cricetulus_griseus_chok1gshd
WBGene00013189	Y54E2A.4	99	45.386	ENSCGRG00000012933	Ascc3	88	47.041	Cricetulus_griseus_crigri
WBGene00013189	Y54E2A.4	99	45.147	ENSCSEG00000012811	ascc3	89	46.239	Cynoglossus_semilaevis
WBGene00013189	Y54E2A.4	97	44.840	ENSCVAG00000013014	ascc3	89	44.867	Cyprinodon_variegatus
WBGene00013189	Y54E2A.4	86	48.369	ENSDARG00000086678	ascc3	99	63.176	Danio_rerio
WBGene00013189	Y54E2A.4	82	48.066	ENSDNOG00000010279	ASCC3	99	48.066	Dasypus_novemcinctus
WBGene00013189	Y54E2A.4	99	44.570	ENSDORG00000008572	Ascc3	88	46.575	Dipodomys_ordii
WBGene00013189	Y54E2A.4	99	43.029	FBgn0038344	obe	90	44.157	Drosophila_melanogaster
WBGene00013189	Y54E2A.4	74	58.716	ENSETEG00000010694	-	58	58.716	Echinops_telfairi
WBGene00013189	Y54E2A.4	54	56.499	ENSEBUG00000009772	-	99	56.499	Eptatretus_burgeri
WBGene00013189	Y54E2A.4	57	51.105	ENSEBUG00000007355	-	98	51.105	Eptatretus_burgeri
WBGene00013189	Y54E2A.4	99	44.621	ENSEASG00005006324	ASCC3	88	46.972	Equus_asinus_asinus
WBGene00013189	Y54E2A.4	99	44.621	ENSECAG00000012013	ASCC3	88	46.921	Equus_caballus
WBGene00013189	Y54E2A.4	93	46.703	ENSEEUG00000009748	ASCC3	90	48.142	Erinaceus_europaeus
WBGene00013189	Y54E2A.4	99	44.796	ENSELUG00000023441	ascc3	89	46.663	Esox_lucius
WBGene00013189	Y54E2A.4	99	44.278	ENSFCAG00000031266	ASCC3	88	46.670	Felis_catus
WBGene00013189	Y54E2A.4	99	44.887	ENSFALG00000005260	ASCC3	88	47.243	Ficedula_albicollis
WBGene00013189	Y54E2A.4	99	44.872	ENSFDAG00000011358	ASCC3	88	46.904	Fukomys_damarensis
WBGene00013189	Y54E2A.4	99	44.444	ENSFHEG00000019247	ascc3	90	45.598	Fundulus_heteroclitus
WBGene00013189	Y54E2A.4	93	48.515	ENSGMOG00000018158	ascc3	84	48.971	Gadus_morhua
WBGene00013189	Y54E2A.4	99	44.846	ENSGALG00000015465	ASCC3	88	47.225	Gallus_gallus
WBGene00013189	Y54E2A.4	99	44.864	ENSGACG00000014141	ascc3	88	46.592	Gasterosteus_aculeatus
WBGene00013189	Y54E2A.4	86	50.821	ENSGAGG00000020794	ASCC3	93	50.821	Gopherus_agassizii
WBGene00013189	Y54E2A.4	99	45.303	ENSGGOG00000002790	ASCC3	88	47.119	Gorilla_gorilla
WBGene00013189	Y54E2A.4	90	46.739	ENSHBUG00000015110	ascc3	86	46.792	Haplochromis_burtoni
WBGene00013189	Y54E2A.4	99	45.057	ENSHGLG00000002093	ASCC3	88	46.957	Heterocephalus_glaber_female
WBGene00013189	Y54E2A.4	99	44.794	ENSHGLG00100005896	ASCC3	88	45.661	Heterocephalus_glaber_male
WBGene00013189	Y54E2A.4	97	45.879	ENSHCOG00000021142	ascc3	89	45.926	Hippocampus_comes
WBGene00013189	Y54E2A.4	98	45.929	ENSIPUG00000013863	ascc3	90	45.997	Ictalurus_punctatus
WBGene00013189	Y54E2A.4	99	43.722	ENSSTOG00000006645	ASCC3	88	45.916	Ictidomys_tridecemlineatus
WBGene00013189	Y54E2A.4	99	44.369	ENSJJAG00000022570	Ascc3	88	46.646	Jaculus_jaculus
WBGene00013189	Y54E2A.4	99	44.856	ENSKMAG00000003953	ascc3	89	45.558	Kryptolebias_marmoratus
WBGene00013189	Y54E2A.4	100	45.551	ENSLBEG00000009623	ascc3	99	47.856	Labrus_bergylta
WBGene00013189	Y54E2A.4	85	51.381	ENSLACG00000015253	ascc3	87	51.381	Latimeria_chalumnae
WBGene00013189	Y54E2A.4	99	45.379	ENSLOCG00000016550	ascc3	88	46.819	Lepisosteus_oculatus
WBGene00013189	Y54E2A.4	85	49.396	ENSLAFG00000011363	ASCC3	75	49.155	Loxodonta_africana
WBGene00013189	Y54E2A.4	99	45.455	ENSMFAG00000002081	ASCC3	88	47.170	Macaca_fascicularis
WBGene00013189	Y54E2A.4	99	45.530	ENSMMUG00000022287	ASCC3	88	47.221	Macaca_mulatta
WBGene00013189	Y54E2A.4	99	45.530	ENSMNEG00000032760	ASCC3	88	47.221	Macaca_nemestrina
WBGene00013189	Y54E2A.4	99	44.111	ENSMLEG00000035241	ASCC3	88	46.251	Mandrillus_leucophaeus
WBGene00013189	Y54E2A.4	99	44.996	ENSMAMG00000005917	ascc3	88	46.416	Mastacembelus_armatus
WBGene00013189	Y54E2A.4	88	49.394	ENSMZEG00005002710	ascc3	73	50.350	Maylandia_zebra
WBGene00013189	Y54E2A.4	99	44.545	ENSMGAG00000013551	ASCC3	88	46.851	Meleagris_gallopavo
WBGene00013189	Y54E2A.4	99	45.276	ENSMAUG00000018304	Ascc3	88	46.967	Mesocricetus_auratus
WBGene00013189	Y54E2A.4	99	45.303	ENSMICG00000008861	ASCC3	88	47.119	Microcebus_murinus
WBGene00013189	Y54E2A.4	99	45.243	ENSMOCG00000004549	Ascc3	88	47.121	Microtus_ochrogaster
WBGene00013189	Y54E2A.4	99	42.089	ENSMMOG00000003198	ascc3	91	44.706	Mola_mola
WBGene00013189	Y54E2A.4	99	46.340	ENSMODG00000018082	ASCC3	88	47.945	Monodelphis_domestica
WBGene00013189	Y54E2A.4	99	43.202	ENSMALG00000015536	ascc3	91	45.196	Monopterus_albus
WBGene00013189	Y54E2A.4	99	45.461	MGP_CAROLIEiJ_G0015302	Ascc3	88	47.184	Mus_caroli
WBGene00013189	Y54E2A.4	99	45.052	ENSMUSG00000038774	Ascc3	88	47.100	Mus_musculus
WBGene00013189	Y54E2A.4	99	44.978	MGP_SPRETEiJ_G0016111	Ascc3	88	46.999	Mus_spretus
WBGene00013189	Y54E2A.4	99	44.012	ENSMPUG00000001675	ASCC3	88	46.894	Mustela_putorius_furo
WBGene00013189	Y54E2A.4	99	44.663	ENSMLUG00000002886	ASCC3	88	46.900	Myotis_lucifugus
WBGene00013189	Y54E2A.4	99	45.234	ENSNGAG00000000702	Ascc3	88	46.772	Nannospalax_galili
WBGene00013189	Y54E2A.4	87	63.850	ENSNBRG00000022083	ascc3	85	63.850	Neolamprologus_brichardi
WBGene00013189	Y54E2A.4	99	45.303	ENSNLEG00000013890	ASCC3	88	47.017	Nomascus_leucogenys
WBGene00013189	Y54E2A.4	81	72.727	ENSMEUG00000003061	ASCC3	58	72.727	Notamacropus_eugenii
WBGene00013189	Y54E2A.4	99	45.159	ENSODEG00000000069	ASCC3	88	46.927	Octodon_degus
WBGene00013189	Y54E2A.4	98	45.887	ENSONIG00000016540	ascc3	90	45.929	Oreochromis_niloticus
WBGene00013189	Y54E2A.4	99	45.181	ENSOANG00000008944	ASCC3	88	46.815	Ornithorhynchus_anatinus
WBGene00013189	Y54E2A.4	99	45.103	ENSOCUG00000002766	ASCC3	88	47.221	Oryctolagus_cuniculus
WBGene00013189	Y54E2A.4	99	44.084	ENSORLG00000004221	ascc3	93	45.681	Oryzias_latipes
WBGene00013189	Y54E2A.4	99	44.118	ENSORLG00020022595	ascc3	94	46.958	Oryzias_latipes_hni
WBGene00013189	Y54E2A.4	99	44.084	ENSORLG00015009231	ascc3	93	45.791	Oryzias_latipes_hsok
WBGene00013189	Y54E2A.4	99	44.663	ENSOMEG00000019630	ascc3	88	46.538	Oryzias_melastigma
WBGene00013189	Y54E2A.4	86	48.439	ENSOGAG00000009875	ASCC3	85	48.439	Otolemur_garnettii
WBGene00013189	Y54E2A.4	99	44.872	ENSOARG00000011627	ASCC3	88	47.029	Ovis_aries
WBGene00013189	Y54E2A.4	99	45.227	ENSPPAG00000030772	ASCC3	88	47.068	Pan_paniscus
WBGene00013189	Y54E2A.4	99	44.278	ENSPPRG00000011358	ASCC3	88	46.670	Panthera_pardus
WBGene00013189	Y54E2A.4	99	44.278	ENSPTIG00000006331	ASCC3	88	46.468	Panthera_tigris_altaica
WBGene00013189	Y54E2A.4	99	45.227	ENSPTRG00000018448	ASCC3	88	47.068	Pan_troglodytes
WBGene00013189	Y54E2A.4	99	45.530	ENSPANG00000006307	ASCC3	88	47.221	Papio_anubis
WBGene00013189	Y54E2A.4	99	44.553	ENSPKIG00000013639	ascc3	90	45.190	Paramormyrops_kingsleyae
WBGene00013189	Y54E2A.4	99	44.703	ENSPSIG00000002620	-	95	46.138	Pelodiscus_sinensis
WBGene00013189	Y54E2A.4	99	45.565	ENSPEMG00000015319	Ascc3	88	47.256	Peromyscus_maniculatus_bairdii
WBGene00013189	Y54E2A.4	86	50.439	ENSPMAG00000002163	-	100	52.069	Petromyzon_marinus
WBGene00013189	Y54E2A.4	99	45.840	ENSPCIG00000017288	ASCC3	88	47.833	Phascolarctos_cinereus
WBGene00013189	Y54E2A.4	89	48.703	ENSPFOG00000001462	ascc3	88	48.702	Poecilia_formosa
WBGene00013189	Y54E2A.4	98	45.951	ENSPREG00000017616	ascc3	90	46.104	Poecilia_reticulata
WBGene00013189	Y54E2A.4	99	44.470	ENSPPYG00000016869	ASCC3	88	46.609	Pongo_abelii
WBGene00013189	Y54E2A.4	93	46.761	ENSPCAG00000008834	ASCC3	82	45.322	Procavia_capensis
WBGene00013189	Y54E2A.4	95	48.822	ENSPVAG00000012827	ASCC3	85	48.709	Pteropus_vampyrus
WBGene00013189	Y54E2A.4	99	44.621	ENSPNYG00000018913	ascc3	96	46.923	Pundamilia_nyererei
WBGene00013189	Y54E2A.4	99	44.671	ENSPNAG00000016413	ascc3	96	46.990	Pygocentrus_nattereri
WBGene00013189	Y54E2A.4	99	45.276	ENSRNOG00000037604	Ascc3	88	46.907	Rattus_norvegicus
WBGene00013189	Y54E2A.4	99	45.530	ENSRROG00000045402	ASCC3	88	47.221	Rhinopithecus_roxellana
WBGene00013189	Y54E2A.4	87	42.538	YGR271W	-	80	44.975	Saccharomyces_cerevisiae
WBGene00013189	Y54E2A.4	99	45.045	ENSSBOG00000025142	ASCC3	88	47.035	Saimiri_boliviensis_boliviensis
WBGene00013189	Y54E2A.4	99	45.550	ENSSHAG00000016496	ASCC3	88	47.504	Sarcophilus_harrisii
WBGene00013189	Y54E2A.4	100	44.561	ENSSFOG00015010273	ascc3	88	46.251	Scleropages_formosus
WBGene00013189	Y54E2A.4	100	44.856	ENSSMAG00000012927	ascc3	87	46.358	Scophthalmus_maximus
WBGene00013189	Y54E2A.4	99	44.989	ENSSDUG00000010897	ascc3	89	46.088	Seriola_dumerili
WBGene00013189	Y54E2A.4	99	45.139	ENSSLDG00000021782	ascc3	89	46.231	Seriola_lalandi_dorsalis
WBGene00013189	Y54E2A.4	99	43.338	ENSSARG00000001858	ASCC3	80	43.338	Sorex_araneus
WBGene00013189	Y54E2A.4	99	44.877	ENSSPUG00000001842	ASCC3	88	46.781	Sphenodon_punctatus
WBGene00013189	Y54E2A.4	99	44.511	ENSSPAG00000007677	ascc3	89	45.892	Stegastes_partitus
WBGene00013189	Y54E2A.4	99	44.705	ENSSSCG00000004358	ASCC3	97	46.646	Sus_scrofa
WBGene00013189	Y54E2A.4	99	44.869	ENSTGUG00000012262	ASCC3	97	47.225	Taeniopygia_guttata
WBGene00013189	Y54E2A.4	87	48.888	ENSTNIG00000005079	ascc3	90	44.298	Tetraodon_nigroviridis
WBGene00013189	Y54E2A.4	79	64.706	ENSTBEG00000015236	ASCC3	67	64.706	Tupaia_belangeri
WBGene00013189	Y54E2A.4	99	46.041	ENSTTRG00000008255	ASCC3	84	48.363	Tursiops_truncatus
WBGene00013189	Y54E2A.4	85	49.394	ENSUAMG00000023340	-	98	51.097	Ursus_americanus
WBGene00013189	Y54E2A.4	99	44.419	ENSUMAG00000021200	ASCC3	88	45.892	Ursus_maritimus
WBGene00013189	Y54E2A.4	96	45.330	ENSVPAG00000001408	ASCC3	88	45.330	Vicugna_pacos
WBGene00013189	Y54E2A.4	99	44.773	ENSVVUG00000015397	ASCC3	88	46.993	Vulpes_vulpes
WBGene00013189	Y54E2A.4	99	45.600	ENSXETG00000032212	-	98	45.641	Xenopus_tropicalis
WBGene00013189	Y54E2A.4	98	45.626	ENSXMAG00000000071	ascc3	90	45.730	Xiphophorus_maculatus