EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00013214 (Gene tree)
Gene ID: -
Gene Symbol: Y54G11A.3
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 7353 bases
Position: chrII:14276621-14283973
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y54G11A	DEAD	PF00270.29	8e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y54G11A.3	-	1729	NM_064572	Y54G11A.3	504 (aa)	NP_496973	Q9XVZ6

Gene Model

Click here to download WBGene00013214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00013214	Y54G11A.3	70	35.127	WBGene00012059	T26G10.1	68	35.043
WBGene00013214	Y54G11A.3	80	39.268	WBGene00006888	vbh-1	64	39.036
WBGene00013214	Y54G11A.3	80	30.542	WBGene00022029	Y65B4A.6	95	30.542
WBGene00013214	Y54G11A.3	73	32.527	WBGene00002083	inf-1	87	32.527
WBGene00013214	Y54G11A.3	77	39.500	WBGene00018776	F53H1.1	52	39.599
WBGene00013214	Y54G11A.3	76	30.617	WBGene00011032	R05D11.4	64	30.591
WBGene00013214	Y54G11A.3	80	30.296	WBGene00018007	F33D11.10	95	30.296
WBGene00013214	Y54G11A.3	78	37.250	WBGene00019245	sacy-1	62	37.250
WBGene00013214	Y54G11A.3	78	33.659	WBGene00001600	glh-3	56	33.659
WBGene00013214	Y54G11A.3	70	31.198	WBGene00015232	B0511.6	63	31.476
WBGene00013214	Y54G11A.3	79	36.029	WBGene00002244	laf-1	67	35.000
WBGene00013214	Y54G11A.3	84	39.720	WBGene00010260	ddx-17	84	37.195
WBGene00013214	Y54G11A.3	74	31.551	WBGene00000479	cgh-1	82	31.551
WBGene00013214	Y54G11A.3	79	33.493	WBGene00001598	glh-1	53	33.649
WBGene00013214	Y54G11A.3	78	38.534	WBGene00017162	ddx-23	57	38.534

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013214	Y54G11A.3	90	48.069	ENSAPOG00000001712	ddx43	64	48.069	Acanthochromis_polyacanthus
WBGene00013214	Y54G11A.3	79	47.264	ENSACIG00000012170	ddx43	61	47.264	Amphilophus_citrinellus
WBGene00013214	Y54G11A.3	90	48.359	ENSAOCG00000001331	ddx43	63	48.359	Amphiprion_ocellaris
WBGene00013214	Y54G11A.3	90	48.359	ENSAPEG00000001133	ddx43	63	48.359	Amphiprion_percula
WBGene00013214	Y54G11A.3	90	48.796	ENSATEG00000012664	ddx43	65	48.796	Anabas_testudineus
WBGene00013214	Y54G11A.3	94	46.042	ENSAPLG00000010182	-	95	47.323	Anas_platyrhynchos
WBGene00013214	Y54G11A.3	94	47.817	ENSACAG00000004387	-	73	47.599	Anolis_carolinensis
WBGene00013214	Y54G11A.3	90	47.162	ENSACLG00000026081	ddx43	70	45.122	Astatotilapia_calliptera
WBGene00013214	Y54G11A.3	90	48.684	ENSAMXG00000004457	ddx43	63	48.418	Astyanax_mexicanus
WBGene00013214	Y54G11A.3	87	45.125	ENSCVAG00000009980	ddx43	65	45.125	Cyprinodon_variegatus
WBGene00013214	Y54G11A.3	90	48.802	ENSDARG00000022614	ddx43	64	48.203	Danio_rerio
WBGene00013214	Y54G11A.3	88	48.230	FBgn0037549	CG7878	63	48.230	Drosophila_melanogaster
WBGene00013214	Y54G11A.3	77	38.205	ENSETEG00000014626	-	72	38.205	Echinops_telfairi
WBGene00013214	Y54G11A.3	90	47.702	ENSELUG00000012126	ddx43	68	47.702	Esox_lucius
WBGene00013214	Y54G11A.3	96	46.029	ENSFALG00000007042	-	72	45.808	Ficedula_albicollis
WBGene00013214	Y54G11A.3	90	48.359	ENSFHEG00000011226	ddx43	81	47.921	Fundulus_heteroclitus
WBGene00013214	Y54G11A.3	78	52.926	ENSGMOG00000004178	ddx43	83	52.926	Gadus_morhua
WBGene00013214	Y54G11A.3	85	47.786	ENSGALG00000015928	-	95	47.786	Gallus_gallus
WBGene00013214	Y54G11A.3	90	48.140	ENSGAFG00000012622	ddx43	64	48.140	Gambusia_affinis
WBGene00013214	Y54G11A.3	89	46.652	ENSGACG00000012072	ddx43	86	46.652	Gasterosteus_aculeatus
WBGene00013214	Y54G11A.3	88	47.973	ENSGAGG00000025230	-	68	47.973	Gopherus_agassizii
WBGene00013214	Y54G11A.3	90	46.943	ENSHBUG00000011653	ddx43	70	44.919	Haplochromis_burtoni
WBGene00013214	Y54G11A.3	79	52.882	ENSHCOG00000014704	ddx43	64	50.348	Hippocampus_comes
WBGene00013214	Y54G11A.3	94	46.012	ENSIPUG00000023423	ddx43	70	46.012	Ictalurus_punctatus
WBGene00013214	Y54G11A.3	90	47.921	ENSKMAG00000016167	ddx43	64	47.921	Kryptolebias_marmoratus
WBGene00013214	Y54G11A.3	94	46.138	ENSLBEG00000007913	ddx43	68	46.138	Labrus_bergylta
WBGene00013214	Y54G11A.3	81	47.229	ENSLACG00000000741	ddx43	83	47.229	Latimeria_chalumnae
WBGene00013214	Y54G11A.3	90	46.930	ENSLOCG00000016170	ddx43	67	46.930	Lepisosteus_oculatus
WBGene00013214	Y54G11A.3	90	47.702	ENSMAMG00000022128	ddx43	71	45.875	Mastacembelus_armatus
WBGene00013214	Y54G11A.3	90	47.162	ENSMZEG00005027349	ddx43	70	45.122	Maylandia_zebra
WBGene00013214	Y54G11A.3	91	46.652	ENSMGAG00000013832	-	78	46.652	Meleagris_gallopavo
WBGene00013214	Y54G11A.3	90	47.516	ENSMMOG00000007346	ddx43	66	47.516	Mola_mola
WBGene00013214	Y54G11A.3	79	49.123	ENSMODG00000014335	-	67	49.123	Monodelphis_domestica
WBGene00013214	Y54G11A.3	93	46.497	ENSMODG00000018546	-	71	46.497	Monodelphis_domestica
WBGene00013214	Y54G11A.3	90	48.140	ENSMALG00000020673	ddx43	67	48.140	Monopterus_albus
WBGene00013214	Y54G11A.3	90	46.943	ENSNBRG00000010942	ddx43	71	44.919	Neolamprologus_brichardi
WBGene00013214	Y54G11A.3	90	46.943	ENSONIG00000001195	ddx43	69	46.943	Oreochromis_niloticus
WBGene00013214	Y54G11A.3	57	46.474	ENSOANG00000010479	-	99	46.474	Ornithorhynchus_anatinus
WBGene00013214	Y54G11A.3	56	46.290	ENSOANG00000006467	-	75	46.048	Ornithorhynchus_anatinus
WBGene00013214	Y54G11A.3	90	48.352	ENSORLG00000002267	ddx43	69	48.352	Oryzias_latipes
WBGene00013214	Y54G11A.3	90	48.352	ENSORLG00020018592	ddx43	74	47.119	Oryzias_latipes_hni
WBGene00013214	Y54G11A.3	90	48.352	ENSORLG00015004854	ddx43	68	48.352	Oryzias_latipes_hsok
WBGene00013214	Y54G11A.3	90	48.140	ENSOMEG00000023418	ddx43	69	48.140	Oryzias_melastigma
WBGene00013214	Y54G11A.3	94	47.170	ENSPKIG00000002941	ddx43	70	45.833	Paramormyrops_kingsleyae
WBGene00013214	Y54G11A.3	88	47.191	ENSPSIG00000002202	-	70	47.191	Pelodiscus_sinensis
WBGene00013214	Y54G11A.3	58	45.638	ENSPMAG00000006112	ddx43	100	52.586	Petromyzon_marinus
WBGene00013214	Y54G11A.3	88	43.919	ENSPCIG00000002492	-	69	43.919	Phascolarctos_cinereus
WBGene00013214	Y54G11A.3	81	51.351	ENSPCIG00000017981	-	90	51.351	Phascolarctos_cinereus
WBGene00013214	Y54G11A.3	90	48.140	ENSPFOG00000004241	ddx43	64	48.140	Poecilia_formosa
WBGene00013214	Y54G11A.3	90	48.140	ENSPLAG00000023362	ddx43	64	47.702	Poecilia_latipinna
WBGene00013214	Y54G11A.3	90	48.140	ENSPMEG00000004870	ddx43	64	48.140	Poecilia_mexicana
WBGene00013214	Y54G11A.3	90	43.478	ENSPREG00000000923	ddx43	67	43.478	Poecilia_reticulata
WBGene00013214	Y54G11A.3	90	46.507	ENSPNYG00000009064	ddx43	70	44.512	Pundamilia_nyererei
WBGene00013214	Y54G11A.3	94	47.479	ENSPNAG00000001232	ddx43	65	47.479	Pygocentrus_nattereri
WBGene00013214	Y54G11A.3	91	44.589	ENSSHAG00000016933	-	78	44.589	Sarcophilus_harrisii
WBGene00013214	Y54G11A.3	93	47.134	ENSSHAG00000001847	-	72	47.134	Sarcophilus_harrisii
WBGene00013214	Y54G11A.3	96	46.708	ENSSFOG00015012193	ddx43	74	46.708	Scleropages_formosus
WBGene00013214	Y54G11A.3	90	48.908	ENSSMAG00000019288	ddx43	61	48.908	Scophthalmus_maximus
WBGene00013214	Y54G11A.3	90	48.578	ENSSDUG00000020120	ddx43	63	48.578	Seriola_dumerili
WBGene00013214	Y54G11A.3	79	53.015	ENSSLDG00000017225	ddx43	55	53.015	Seriola_lalandi_dorsalis
WBGene00013214	Y54G11A.3	93	40.552	ENSSPUG00000018097	-	94	40.552	Sphenodon_punctatus
WBGene00013214	Y54G11A.3	90	47.702	ENSSPAG00000006858	ddx43	64	47.702	Stegastes_partitus
WBGene00013214	Y54G11A.3	94	46.973	ENSTGUG00000012684	-	78	46.973	Taeniopygia_guttata
WBGene00013214	Y54G11A.3	90	47.807	ENSTRUG00000012795	ddx43	65	47.807	Takifugu_rubripes
WBGene00013214	Y54G11A.3	90	47.033	ENSTNIG00000009822	ddx43	80	45.912	Tetraodon_nigroviridis
WBGene00013214	Y54G11A.3	92	48.077	ENSXETG00000011767	ddx43	69	48.077	Xenopus_tropicalis
WBGene00013214	Y54G11A.3	90	48.140	ENSXCOG00000013810	ddx43	69	48.140	Xiphophorus_couchianus
WBGene00013214	Y54G11A.3	90	48.140	ENSXMAG00000017126	ddx43	69	45.859	Xiphophorus_maculatus