EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00013405 (Gene tree)
Gene ID: -
Gene Symbol: tdpt-1
Alias: -
Full Name: 5'-tyrosyl-DNA phosphodiesterase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 3599 bases
Position: chrI:14097492-14101090
Accession: Q9XWG3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y63D3A	Exo_endo_phos	PF03372.23	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y63D3A.4	-	1307	NM_061060	Y63D3A.4	362 (aa)	NP_493461	Q9XWG3

Gene Model

Click here to download WBGene00013405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013405's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013405	tdpt-1	85	30.699	ENSG00000111802	TDP2	90	30.699	Homo_sapiens
WBGene00013405	tdpt-1	67	30.924	ENSAPOG00000018379	-	87	30.924	Acanthochromis_polyacanthus
WBGene00013405	tdpt-1	71	34.962	ENSAMEG00000010230	TDP2	87	34.940	Ailuropoda_melanoleuca
WBGene00013405	tdpt-1	67	31.474	ENSAPEG00000004208	-	88	31.474	Amphiprion_percula
WBGene00013405	tdpt-1	67	30.888	ENSATEG00000010663	-	81	30.888	Anabas_testudineus
WBGene00013405	tdpt-1	86	31.722	ENSACAG00000002332	TDP2	89	32.024	Anolis_carolinensis
WBGene00013405	tdpt-1	85	30.091	ENSANAG00000020033	TDP2	90	30.091	Aotus_nancymaae
WBGene00013405	tdpt-1	74	30.605	ENSACLG00000016132	tdp2b	84	30.739	Astatotilapia_calliptera
WBGene00013405	tdpt-1	74	30.961	ENSACLG00000016174	tdp2b	84	31.128	Astatotilapia_calliptera
WBGene00013405	tdpt-1	65	32.389	ENSAMXG00000036549	tdp2a	79	32.389	Astyanax_mexicanus
WBGene00013405	tdpt-1	86	33.036	ENSBTAG00000000365	TDP2	91	33.036	Bos_taurus
WBGene00013405	tdpt-1	85	30.395	ENSCJAG00000006074	TDP2	90	30.395	Callithrix_jacchus
WBGene00013405	tdpt-1	85	30.091	ENSCJAG00000021963	-	90	30.091	Callithrix_jacchus
WBGene00013405	tdpt-1	84	30.514	ENSCAFG00000010428	TDP2	94	30.793	Canis_familiaris
WBGene00013405	tdpt-1	71	33.708	ENSCAFG00020009994	TDP2	84	34.137	Canis_lupus_dingo
WBGene00013405	tdpt-1	71	35.075	ENSCHIG00000015294	-	84	35.547	Capra_hircus
WBGene00013405	tdpt-1	66	33.865	ENSTSYG00000037199	TDP2	79	33.865	Carlito_syrichta
WBGene00013405	tdpt-1	85	31.003	ENSCPOG00000006390	TDP2	91	31.003	Cavia_porcellus
WBGene00013405	tdpt-1	85	30.395	ENSCCAG00000022734	TDP2	90	30.395	Cebus_capucinus
WBGene00013405	tdpt-1	85	30.091	ENSCATG00000022076	TDP2	84	30.091	Cercocebus_atys
WBGene00013405	tdpt-1	85	31.307	ENSCLAG00000002072	TDP2	91	31.307	Chinchilla_lanigera
WBGene00013405	tdpt-1	86	33.333	ENSCPBG00000006551	TDP2	91	32.527	Chrysemys_picta_bellii
WBGene00013405	tdpt-1	85	30.395	ENSCANG00000040122	TDP2	91	30.395	Colobus_angolensis_palliatus
WBGene00013405	tdpt-1	84	33.846	ENSCGRG00001000384	Tdp2	87	33.846	Cricetulus_griseus_chok1gshd
WBGene00013405	tdpt-1	84	33.544	ENSCGRG00000010250	Tdp2	89	34.494	Cricetulus_griseus_crigri
WBGene00013405	tdpt-1	67	32.031	ENSDARG00000069941	tdp2a	57	31.321	Danio_rerio
WBGene00013405	tdpt-1	85	31.307	ENSDNOG00000044082	TDP2	88	31.003	Dasypus_novemcinctus
WBGene00013405	tdpt-1	66	32.129	ENSETEG00000019096	TDP2	88	32.129	Echinops_telfairi
WBGene00013405	tdpt-1	66	36.759	ENSEBUG00000006535	tdp2a	57	36.759	Eptatretus_burgeri
WBGene00013405	tdpt-1	85	31.003	ENSEASG00005007656	TDP2	90	31.307	Equus_asinus_asinus
WBGene00013405	tdpt-1	85	31.003	ENSECAG00000014264	TDP2	90	31.307	Equus_caballus
WBGene00013405	tdpt-1	85	32.407	ENSEEUG00000010776	TDP2	89	32.407	Erinaceus_europaeus
WBGene00013405	tdpt-1	67	33.071	ENSELUG00000009321	tdp2a	76	32.271	Esox_lucius
WBGene00013405	tdpt-1	85	31.611	ENSFCAG00000025612	TDP2	90	31.307	Felis_catus
WBGene00013405	tdpt-1	86	32.036	ENSFALG00000004710	TDP2	91	32.335	Ficedula_albicollis
WBGene00013405	tdpt-1	70	33.585	ENSFDAG00000006512	TDP2	84	34.137	Fukomys_damarensis
WBGene00013405	tdpt-1	67	32.812	ENSFHEG00000013560	-	85	32.812	Fundulus_heteroclitus
WBGene00013405	tdpt-1	86	33.533	ENSGALG00000013637	TDP2	89	32.635	Gallus_gallus
WBGene00013405	tdpt-1	93	30.579	ENSGAGG00000002853	TDP2	96	30.184	Gopherus_agassizii
WBGene00013405	tdpt-1	85	30.699	ENSGGOG00000014237	TDP2	90	30.699	Gorilla_gorilla
WBGene00013405	tdpt-1	59	31.390	ENSHBUG00000005421	-	80	31.500	Haplochromis_burtoni
WBGene00013405	tdpt-1	85	31.402	ENSHGLG00000008655	TDP2	90	31.098	Heterocephalus_glaber_female
WBGene00013405	tdpt-1	85	31.402	ENSHGLG00100019087	TDP2	90	31.098	Heterocephalus_glaber_male
WBGene00013405	tdpt-1	89	31.395	ENSJJAG00000021685	Tdp2	97	31.304	Jaculus_jaculus
WBGene00013405	tdpt-1	67	32.677	ENSKMAG00000015485	-	79	32.677	Kryptolebias_marmoratus
WBGene00013405	tdpt-1	86	33.528	ENSLACG00000008852	TDP2	92	33.333	Latimeria_chalumnae
WBGene00013405	tdpt-1	72	33.704	ENSLOCG00000005817	tdp2b	88	34.661	Lepisosteus_oculatus
WBGene00013405	tdpt-1	85	30.091	ENSLAFG00000002567	TDP2	92	30.091	Loxodonta_africana
WBGene00013405	tdpt-1	85	30.091	ENSMFAG00000045296	TDP2	91	30.091	Macaca_fascicularis
WBGene00013405	tdpt-1	85	30.091	ENSMMUG00000009803	TDP2	91	30.091	Macaca_mulatta
WBGene00013405	tdpt-1	85	30.091	ENSMNEG00000038003	TDP2	91	30.091	Macaca_nemestrina
WBGene00013405	tdpt-1	85	30.091	ENSMLEG00000028883	TDP2	91	30.091	Mandrillus_leucophaeus
WBGene00013405	tdpt-1	64	30.802	ENSMZEG00005003980	-	67	30.986	Maylandia_zebra
WBGene00013405	tdpt-1	73	31.273	ENSMZEG00005004126	tdp2b	86	31.128	Maylandia_zebra
WBGene00013405	tdpt-1	72	30.627	ENSMZEG00005004103	tdp2b	84	30.859	Maylandia_zebra
WBGene00013405	tdpt-1	67	30.435	ENSMZEG00005004055	tdp2b	82	30.435	Maylandia_zebra
WBGene00013405	tdpt-1	72	30.435	ENSMZEG00005004077	tdp2b	85	30.888	Maylandia_zebra
WBGene00013405	tdpt-1	86	33.634	ENSMGAG00000008014	TDP2	88	32.326	Meleagris_gallopavo
WBGene00013405	tdpt-1	84	33.841	ENSMAUG00000014451	Tdp2	87	33.231	Mesocricetus_auratus
WBGene00013405	tdpt-1	90	30.946	ENSMICG00000000039	TDP2	89	30.699	Microcebus_murinus
WBGene00013405	tdpt-1	84	32.927	ENSMOCG00000002823	Tdp2	87	32.615	Microtus_ochrogaster
WBGene00013405	tdpt-1	76	30.795	ENSMODG00000011653	TDP2	91	30.592	Monodelphis_domestica
WBGene00013405	tdpt-1	85	33.333	MGP_CAROLIEiJ_G0018354	Tdp2	88	32.523	Mus_caroli
WBGene00013405	tdpt-1	85	32.831	ENSMUSG00000035958	Tdp2	88	32.523	Mus_musculus
WBGene00013405	tdpt-1	85	33.131	MGP_PahariEiJ_G0019417	Tdp2	88	33.131	Mus_pahari
WBGene00013405	tdpt-1	85	33.131	MGP_SPRETEiJ_G0019220	Tdp2	87	33.131	Mus_spretus
WBGene00013405	tdpt-1	85	30.816	ENSMPUG00000004516	TDP2	91	31.722	Mustela_putorius_furo
WBGene00013405	tdpt-1	91	31.534	ENSNGAG00000001375	Tdp2	93	31.534	Nannospalax_galili
WBGene00013405	tdpt-1	85	30.699	ENSNLEG00000002447	TDP2	91	30.699	Nomascus_leucogenys
WBGene00013405	tdpt-1	90	31.792	ENSOPRG00000016299	TDP2	96	31.503	Ochotona_princeps
WBGene00013405	tdpt-1	75	30.851	ENSODEG00000014018	TDP2	83	33.333	Octodon_degus
WBGene00013405	tdpt-1	85	32.209	ENSOCUG00000013773	TDP2	89	31.288	Oryctolagus_cuniculus
WBGene00013405	tdpt-1	67	31.225	ENSORLG00000001661	-	91	31.225	Oryzias_latipes
WBGene00013405	tdpt-1	67	32.016	ENSORLG00020004634	-	91	31.621	Oryzias_latipes_hni
WBGene00013405	tdpt-1	67	34.818	ENSOMEG00000015899	-	91	34.413	Oryzias_melastigma
WBGene00013405	tdpt-1	85	30.395	ENSOGAG00000025303	TDP2	88	30.699	Otolemur_garnettii
WBGene00013405	tdpt-1	85	30.699	ENSPPAG00000029023	TDP2	90	30.699	Pan_paniscus
WBGene00013405	tdpt-1	85	31.915	ENSPPRG00000015398	TDP2	90	31.611	Panthera_pardus
WBGene00013405	tdpt-1	66	34.538	ENSPTIG00000018574	TDP2	84	34.538	Panthera_tigris_altaica
WBGene00013405	tdpt-1	85	30.699	ENSPTRG00000017778	TDP2	90	30.699	Pan_troglodytes
WBGene00013405	tdpt-1	85	30.091	ENSPANG00000017590	TDP2	91	30.091	Papio_anubis
WBGene00013405	tdpt-1	73	32.353	ENSPSIG00000004948	TDP2	84	32.932	Pelodiscus_sinensis
WBGene00013405	tdpt-1	85	32.733	ENSPEMG00000001788	Tdp2	88	33.131	Peromyscus_maniculatus_bairdii
WBGene00013405	tdpt-1	67	32.472	ENSPMAG00000001570	tdp2b	95	33.209	Petromyzon_marinus
WBGene00013405	tdpt-1	67	33.725	ENSPFOG00000017990	-	89	33.725	Poecilia_formosa
WBGene00013405	tdpt-1	67	32.411	ENSPLAG00000019439	-	78	32.411	Poecilia_latipinna
WBGene00013405	tdpt-1	79	31.333	ENSPMEG00000010824	-	84	33.725	Poecilia_mexicana
WBGene00013405	tdpt-1	85	31.003	ENSPPYG00000016282	TDP2	83	31.003	Pongo_abelii
WBGene00013405	tdpt-1	85	31.307	ENSPCOG00000021415	TDP2	90	31.307	Propithecus_coquereli
WBGene00013405	tdpt-1	67	33.465	ENSPNAG00000022162	tdp2a	63	33.465	Pygocentrus_nattereri
WBGene00013405	tdpt-1	85	34.347	ENSRNOG00000018246	Tdp2	89	34.347	Rattus_norvegicus
WBGene00013405	tdpt-1	85	30.091	ENSRBIG00000037119	TDP2	91	30.091	Rhinopithecus_bieti
WBGene00013405	tdpt-1	85	30.699	ENSSBOG00000028734	TDP2	83	30.699	Saimiri_boliviensis_boliviensis
WBGene00013405	tdpt-1	87	30.994	ENSSHAG00000002506	TDP2	89	30.588	Sarcophilus_harrisii
WBGene00013405	tdpt-1	67	31.746	ENSSFOG00015011322	-	69	31.746	Scleropages_formosus
WBGene00013405	tdpt-1	67	34.387	ENSSARG00000013547	TDP2	89	34.387	Sorex_araneus
WBGene00013405	tdpt-1	85	31.915	ENSSSCG00000001092	TDP2	90	31.915	Sus_scrofa
WBGene00013405	tdpt-1	66	35.341	ENSTGUG00000009035	TDP2	93	35.341	Taeniopygia_guttata
WBGene00013405	tdpt-1	67	33.071	ENSTRUG00000012218	-	86	33.071	Takifugu_rubripes
WBGene00013405	tdpt-1	67	32.031	ENSTNIG00000010260	TDP2	95	32.031	Tetraodon_nigroviridis
WBGene00013405	tdpt-1	86	31.532	ENSTTRG00000016376	TDP2	91	31.532	Tursiops_truncatus
WBGene00013405	tdpt-1	85	32.390	ENSUAMG00000025939	TDP2	90	32.188	Ursus_americanus
WBGene00013405	tdpt-1	77	33.566	ENSUMAG00000020111	TDP2	81	34.940	Ursus_maritimus
WBGene00013405	tdpt-1	67	32.677	ENSXCOG00000010778	-	69	32.677	Xiphophorus_couchianus