EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00013441 (Gene tree)
Gene ID: -
Gene Symbol: xpb-1
Alias: -
Full Name: XPB (Xeroderma Pigmentosum complementation group B) related
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 8224 bases
Position: chrIII:11526372-11534595
Accession: Q95PZ4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y66D12A	ResIII	PF04851.15	2.5e-18	1	1
Y66D12A	ResIII	PF04851.15	2.5e-18	1	1
Y66D12A	ResIII	PF04851.15	2.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y66D12A.15.3	-	2550	NM_067086	Y66D12A.15.3	789 (aa)	NP_499487	Q95PZ4
Y66D12A.15.2	-	2623	NM_067086	Y66D12A.15.2	789 (aa)	NP_499487	Q95PZ4
Y66D12A.15.1	-	2593	NM_067086	Y66D12A.15.1	789 (aa)	NP_499487	Q95PZ4

Gene Model

Click here to download WBGene00013441's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013441's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013441	xpb-1	99	63.705	ENSG00000163161	ERCC3	99	75.000	Homo_sapiens
WBGene00013441	xpb-1	99	62.422	ENSAPOG00000014383	ercc3	99	62.453	Acanthochromis_polyacanthus
WBGene00013441	xpb-1	97	64.812	ENSAMEG00000016840	ERCC3	96	64.683	Ailuropoda_melanoleuca
WBGene00013441	xpb-1	96	62.891	ENSACIG00000000126	ercc3	100	61.432	Amphilophus_citrinellus
WBGene00013441	xpb-1	99	62.172	ENSAOCG00000009396	ercc3	99	62.453	Amphiprion_ocellaris
WBGene00013441	xpb-1	99	62.172	ENSAPEG00000023077	ercc3	99	62.453	Amphiprion_percula
WBGene00013441	xpb-1	96	63.233	ENSATEG00000014860	ercc3	99	62.125	Anabas_testudineus
WBGene00013441	xpb-1	91	64.876	ENSAPLG00000012068	ERCC3	98	64.876	Anas_platyrhynchos
WBGene00013441	xpb-1	92	65.353	ENSACAG00000009919	ERCC3	100	65.176	Anolis_carolinensis
WBGene00013441	xpb-1	99	63.579	ENSANAG00000031091	ERCC3	98	63.158	Aotus_nancymaae
WBGene00013441	xpb-1	99	61.827	ENSACLG00000022508	ercc3	99	61.809	Astatotilapia_calliptera
WBGene00013441	xpb-1	99	62.281	ENSAMXG00000036947	ercc3	99	62.030	Astyanax_mexicanus
WBGene00013441	xpb-1	99	63.171	ENSBTAG00000020777	ERCC3	99	62.907	Bos_taurus
WBGene00013441	xpb-1	99	63.614	ENSCJAG00000010416	ERCC3	98	63.283	Callithrix_jacchus
WBGene00013441	xpb-1	97	64.036	ENSCAFG00000004497	ERCC3	99	62.767	Canis_familiaris
WBGene00013441	xpb-1	97	64.036	ENSCAFG00020003495	ERCC3	99	62.767	Canis_lupus_dingo
WBGene00013441	xpb-1	99	63.171	ENSCHIG00000014551	ERCC3	99	62.907	Capra_hircus
WBGene00013441	xpb-1	97	64.387	ENSTSYG00000004137	ERCC3	99	63.112	Carlito_syrichta
WBGene00013441	xpb-1	89	53.760	ENSCAPG00000017027	ERCC3	100	52.933	Cavia_aperea
WBGene00013441	xpb-1	97	63.030	ENSCPOG00000002144	ERCC3	99	61.625	Cavia_porcellus
WBGene00013441	xpb-1	99	63.705	ENSCCAG00000024421	ERCC3	98	63.442	Cebus_capucinus
WBGene00013441	xpb-1	99	63.705	ENSCATG00000032313	ERCC3	98	63.283	Cercocebus_atys
WBGene00013441	xpb-1	97	63.953	ENSCLAG00000002965	ERCC3	94	62.531	Chinchilla_lanigera
WBGene00013441	xpb-1	99	63.579	ENSCSAG00000016827	ERCC3	98	63.158	Chlorocebus_sabaeus
WBGene00013441	xpb-1	74	71.667	ENSCHOG00000007414	ERCC3	82	71.667	Choloepus_hoffmanni
WBGene00013441	xpb-1	92	65.850	ENSCPBG00000013638	ERCC3	100	65.714	Chrysemys_picta_bellii
WBGene00013441	xpb-1	96	62.257	ENSCING00000002867	ercc3	98	61.055	Ciona_intestinalis
WBGene00013441	xpb-1	99	63.830	ENSCANG00000007094	ERCC3	98	63.283	Colobus_angolensis_palliatus
WBGene00013441	xpb-1	97	64.175	ENSCGRG00001009426	Ercc3	99	62.657	Cricetulus_griseus_chok1gshd
WBGene00013441	xpb-1	94	64.229	ENSCGRG00000015547	Ercc3	99	62.661	Cricetulus_griseus_crigri
WBGene00013441	xpb-1	96	63.554	ENSCSEG00000016479	ercc3	96	63.542	Cynoglossus_semilaevis
WBGene00013441	xpb-1	97	63.531	ENSCVAG00000015177	ercc3	99	62.172	Cyprinodon_variegatus
WBGene00013441	xpb-1	96	63.979	ENSDARG00000002402	ercc3	99	62.453	Danio_rerio
WBGene00013441	xpb-1	56	67.556	ENSDNOG00000035027	ERCC3	95	67.556	Dasypus_novemcinctus
WBGene00013441	xpb-1	97	64.433	ENSDORG00000004671	Ercc3	99	63.145	Dipodomys_ordii
WBGene00013441	xpb-1	96	63.342	FBgn0001179	hay	95	63.342	Drosophila_melanogaster
WBGene00013441	xpb-1	87	63.764	ENSETEG00000019887	ERCC3	88	63.287	Echinops_telfairi
WBGene00013441	xpb-1	99	60.697	ENSEBUG00000009773	ercc3	98	60.750	Eptatretus_burgeri
WBGene00013441	xpb-1	96	64.629	ENSEASG00005022466	ERCC3	93	64.360	Equus_asinus_asinus
WBGene00013441	xpb-1	97	64.267	ENSECAG00000006589	ERCC3	99	62.782	Equus_caballus
WBGene00013441	xpb-1	90	65.928	ENSEEUG00000001057	ERCC3	96	65.925	Erinaceus_europaeus
WBGene00013441	xpb-1	96	63.329	ENSELUG00000000089	ercc3	99	61.710	Esox_lucius
WBGene00013441	xpb-1	97	64.093	ENSFCAG00000006989	ERCC3	99	62.563	Felis_catus
WBGene00013441	xpb-1	97	63.355	ENSFALG00000003936	ERCC3	96	63.192	Ficedula_albicollis
WBGene00013441	xpb-1	97	63.260	ENSFDAG00000011924	ERCC3	98	62.516	Fukomys_damarensis
WBGene00013441	xpb-1	99	62.829	ENSFHEG00000005185	ercc3	99	62.578	Fundulus_heteroclitus
WBGene00013441	xpb-1	99	61.606	ENSGMOG00000018032	ercc3	98	61.432	Gadus_morhua
WBGene00013441	xpb-1	96	64.798	ENSGALG00000011515	ERCC3	100	63.119	Gallus_gallus
WBGene00013441	xpb-1	99	62.155	ENSGAFG00000011936	ercc3	99	62.000	Gambusia_affinis
WBGene00013441	xpb-1	96	63.355	ENSGACG00000015218	ercc3	99	64.027	Gasterosteus_aculeatus
WBGene00013441	xpb-1	92	65.714	ENSGAGG00000018579	ERCC3	100	65.578	Gopherus_agassizii
WBGene00013441	xpb-1	99	63.705	ENSGGOG00000015255	ERCC3	98	63.283	Gorilla_gorilla
WBGene00013441	xpb-1	99	61.827	ENSHBUG00000003818	ercc3	99	61.809	Haplochromis_burtoni
WBGene00013441	xpb-1	97	63.907	ENSHGLG00000011014	ERCC3	98	62.767	Heterocephalus_glaber_female
WBGene00013441	xpb-1	97	63.907	ENSHGLG00100013806	ERCC3	98	62.767	Heterocephalus_glaber_male
WBGene00013441	xpb-1	97	63.437	ENSHCOG00000016924	ercc3	99	62.782	Hippocampus_comes
WBGene00013441	xpb-1	99	61.654	ENSIPUG00000021000	ercc3	99	61.577	Ictalurus_punctatus
WBGene00013441	xpb-1	97	64.258	ENSSTOG00000011001	ERCC3	99	62.625	Ictidomys_tridecemlineatus
WBGene00013441	xpb-1	90	63.624	ENSJJAG00000001117	Ercc3	100	63.523	Jaculus_jaculus
WBGene00013441	xpb-1	99	62.453	ENSKMAG00000021764	ercc3	99	62.172	Kryptolebias_marmoratus
WBGene00013441	xpb-1	99	61.905	ENSLBEG00000000468	ercc3	99	61.635	Labrus_bergylta
WBGene00013441	xpb-1	97	60.560	ENSLACG00000014815	ERCC3	96	60.102	Latimeria_chalumnae
WBGene00013441	xpb-1	90	60.996	ENSLOCG00000010907	ercc3	86	60.714	Lepisosteus_oculatus
WBGene00013441	xpb-1	97	63.519	ENSLAFG00000014866	ERCC3	99	62.531	Loxodonta_africana
WBGene00013441	xpb-1	99	63.705	ENSMFAG00000003370	ERCC3	98	63.283	Macaca_fascicularis
WBGene00013441	xpb-1	99	61.090	ENSMNEG00000004215	ERCC3	94	64.759	Macaca_nemestrina
WBGene00013441	xpb-1	99	63.705	ENSMLEG00000042061	ERCC3	98	63.283	Mandrillus_leucophaeus
WBGene00013441	xpb-1	99	62.312	ENSMAMG00000004505	ercc3	99	62.437	Mastacembelus_armatus
WBGene00013441	xpb-1	99	61.827	ENSMZEG00005004854	ercc3	99	61.809	Maylandia_zebra
WBGene00013441	xpb-1	90	65.651	ENSMGAG00000011706	ERCC3	100	65.470	Meleagris_gallopavo
WBGene00013441	xpb-1	97	64.683	ENSMAUG00000004515	Ercc3	99	63.396	Mesocricetus_auratus
WBGene00013441	xpb-1	97	64.295	ENSMICG00000009578	ERCC3	99	62.875	Microcebus_murinus
WBGene00013441	xpb-1	97	64.683	ENSMOCG00000021767	Ercc3	99	63.396	Microtus_ochrogaster
WBGene00013441	xpb-1	97	63.590	ENSMMOG00000018174	ercc3	99	62.861	Mola_mola
WBGene00013441	xpb-1	97	63.928	ENSMODG00000018695	ERCC3	98	62.829	Monodelphis_domestica
WBGene00013441	xpb-1	96	63.117	ENSMALG00000014944	ercc3	99	61.750	Monopterus_albus
WBGene00013441	xpb-1	97	64.858	MGP_CAROLIEiJ_G0022075	Ercc3	99	62.935	Mus_caroli
WBGene00013441	xpb-1	97	64.812	ENSMUSG00000024382	Ercc3	99	62.733	Mus_musculus
WBGene00013441	xpb-1	97	64.858	MGP_PahariEiJ_G0018809	Ercc3	99	62.903	Mus_pahari
WBGene00013441	xpb-1	97	64.185	MGP_SPRETEiJ_G0022987	Ercc3	99	62.733	Mus_spretus
WBGene00013441	xpb-1	97	64.083	ENSMPUG00000012021	ERCC3	99	62.814	Mustela_putorius_furo
WBGene00013441	xpb-1	93	63.172	ENSMLUG00000007429	ERCC3	99	62.838	Myotis_lucifugus
WBGene00013441	xpb-1	97	63.103	ENSNGAG00000019598	Ercc3	98	64.382	Nannospalax_galili
WBGene00013441	xpb-1	99	61.827	ENSNBRG00000019074	ercc3	99	61.809	Neolamprologus_brichardi
WBGene00013441	xpb-1	92	63.587	ENSNLEG00000015665	ERCC3	97	63.129	Nomascus_leucogenys
WBGene00013441	xpb-1	97	62.194	ENSOPRG00000004553	ERCC3	99	61.181	Ochotona_princeps
WBGene00013441	xpb-1	97	63.907	ENSODEG00000005795	ERCC3	98	62.531	Octodon_degus
WBGene00013441	xpb-1	99	62.125	ENSONIG00000003255	ercc3	99	62.108	Oreochromis_niloticus
WBGene00013441	xpb-1	97	64.350	ENSOCUG00000002248	ERCC3	99	62.782	Oryctolagus_cuniculus
WBGene00013441	xpb-1	99	62.344	ENSORLG00000004393	ercc3	99	61.952	Oryzias_latipes
WBGene00013441	xpb-1	100	62.099	ENSORLG00020017718	ercc3	100	61.710	Oryzias_latipes_hni
WBGene00013441	xpb-1	99	62.219	ENSORLG00015015695	ercc3	99	61.827	Oryzias_latipes_hsok
WBGene00013441	xpb-1	99	62.297	ENSOMEG00000015374	ercc3	99	61.779	Oryzias_melastigma
WBGene00013441	xpb-1	97	64.396	ENSOGAG00000009103	ERCC3	99	62.718	Otolemur_garnettii
WBGene00013441	xpb-1	99	63.171	ENSOARG00000016147	ERCC3	99	62.907	Ovis_aries
WBGene00013441	xpb-1	99	63.705	ENSPPAG00000036166	ERCC3	98	63.283	Pan_paniscus
WBGene00013441	xpb-1	97	64.093	ENSPPRG00000001305	ERCC3	99	62.563	Panthera_pardus
WBGene00013441	xpb-1	92	65.312	ENSPTIG00000016969	ERCC3	100	65.034	Panthera_tigris_altaica
WBGene00013441	xpb-1	99	63.705	ENSPTRG00000046940	ERCC3	98	63.283	Pan_troglodytes
WBGene00013441	xpb-1	99	63.705	ENSPANG00000007699	ERCC3	98	63.283	Papio_anubis
WBGene00013441	xpb-1	96	63.519	ENSPKIG00000001319	ercc3	99	63.885	Paramormyrops_kingsleyae
WBGene00013441	xpb-1	92	65.442	ENSPSIG00000014682	ERCC3	100	65.170	Pelodiscus_sinensis
WBGene00013441	xpb-1	97	64.093	ENSPMGG00000017885	ercc3	99	63.065	Periophthalmus_magnuspinnatus
WBGene00013441	xpb-1	97	64.691	ENSPEMG00000013733	Ercc3	99	63.158	Peromyscus_maniculatus_bairdii
WBGene00013441	xpb-1	90	62.102	ENSPMAG00000005081	ercc3	99	62.102	Petromyzon_marinus
WBGene00013441	xpb-1	97	64.212	ENSPCIG00000011821	ERCC3	99	62.829	Phascolarctos_cinereus
WBGene00013441	xpb-1	96	63.719	ENSPFOG00000015604	ercc3	100	61.721	Poecilia_formosa
WBGene00013441	xpb-1	96	61.219	ENSPLAG00000022245	ercc3	100	64.363	Poecilia_latipinna
WBGene00013441	xpb-1	96	63.719	ENSPMEG00000016987	ercc3	100	61.721	Poecilia_mexicana
WBGene00013441	xpb-1	99	62.030	ENSPREG00000020921	ercc3	99	61.905	Poecilia_reticulata
WBGene00013441	xpb-1	99	63.125	ENSPPYG00000012769	ERCC3	98	62.703	Pongo_abelii
WBGene00013441	xpb-1	97	64.424	ENSPCOG00000024903	ERCC3	99	63.000	Propithecus_coquereli
WBGene00013441	xpb-1	89	64.961	ENSPVAG00000013774	ERCC3	88	64.961	Pteropus_vampyrus
WBGene00013441	xpb-1	99	61.827	ENSPNYG00000001208	ercc3	99	61.809	Pundamilia_nyererei
WBGene00013441	xpb-1	96	63.459	ENSPNAG00000005748	ercc3	99	61.702	Pygocentrus_nattereri
WBGene00013441	xpb-1	97	64.729	ENSRNOG00000013180	Ercc3	98	62.687	Rattus_norvegicus
WBGene00013441	xpb-1	99	63.705	ENSRBIG00000027692	ERCC3	98	63.283	Rhinopithecus_bieti
WBGene00013441	xpb-1	99	63.454	ENSRROG00000040673	ERCC3	98	63.033	Rhinopithecus_roxellana
WBGene00013441	xpb-1	91	53.441	YIL143C	SSL2	85	53.360	Saccharomyces_cerevisiae
WBGene00013441	xpb-1	99	63.191	ENSSBOG00000023079	ERCC3	98	63.145	Saimiri_boliviensis_boliviensis
WBGene00013441	xpb-1	97	63.928	ENSSHAG00000007423	ERCC3	98	62.703	Sarcophilus_harrisii
WBGene00013441	xpb-1	97	62.982	ENSSFOG00015012753	ercc3	99	61.625	Scleropages_formosus
WBGene00013441	xpb-1	96	62.872	ENSSMAG00000011915	ercc3	96	63.001	Scophthalmus_maximus
WBGene00013441	xpb-1	96	63.589	ENSSDUG00000021181	ercc3	99	62.453	Seriola_dumerili
WBGene00013441	xpb-1	96	63.719	ENSSLDG00000008744	ercc3	97	62.453	Seriola_lalandi_dorsalis
WBGene00013441	xpb-1	56	59.692	ENSSARG00000000751	-	71	76.289	Sorex_araneus
WBGene00013441	xpb-1	90	64.078	ENSSPUG00000015183	ERCC3	91	63.812	Sphenodon_punctatus
WBGene00013441	xpb-1	99	62.328	ENSSPAG00000004748	ercc3	99	62.078	Stegastes_partitus
WBGene00013441	xpb-1	97	64.479	ENSSSCG00000015721	ERCC3	98	67.978	Sus_scrofa
WBGene00013441	xpb-1	97	64.212	ENSTGUG00000004920	-	98	64.341	Taeniopygia_guttata
WBGene00013441	xpb-1	97	63.613	ENSTRUG00000017185	ercc3	99	62.688	Takifugu_rubripes
WBGene00013441	xpb-1	97	62.452	ENSTNIG00000005457	ercc3	99	62.452	Tetraodon_nigroviridis
WBGene00013441	xpb-1	80	63.101	ENSTBEG00000009381	ERCC3	81	63.043	Tupaia_belangeri
WBGene00013441	xpb-1	67	67.724	ENSUAMG00000009589	-	100	67.778	Ursus_americanus
WBGene00013441	xpb-1	97	64.258	ENSUMAG00000008361	ERCC3	100	62.562	Ursus_maritimus
WBGene00013441	xpb-1	92	65.259	ENSVVUG00000010431	ERCC3	100	65.259	Vulpes_vulpes
WBGene00013441	xpb-1	96	64.083	ENSXETG00000033646	ercc3	95	64.369	Xenopus_tropicalis
WBGene00013441	xpb-1	96	63.437	ENSXCOG00000001791	ercc3	100	61.625	Xiphophorus_couchianus
WBGene00013441	xpb-1	99	62.155	ENSXMAG00000003641	ercc3	99	62.030	Xiphophorus_maculatus