EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00013460 (Gene tree)
Gene ID: -
Gene Symbol: cpsf-3
Alias: -
Full Name: Cleavage and Polyadenylation Specificity Factor
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 8968 bases
Position: chrIV:13273911-13282878
Accession: Q95PY8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y67H2A	CPSF73-100_C	PF11718.8	3.6e-28	1	1
Y67H2A	Beta-Casp	PF10996.8	2.6e-32	1	1
Y67H2A	Lactamase_B	PF00753.27	5.4e-19	1	1
Y67H2A	RMMBL	PF07521.12	1.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y67H2A.1	-	2329	NM_070152	Y67H2A.1	707 (aa)	NP_502553	Q95PY8

Gene Model

Click here to download WBGene00013460's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013460's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00013460	cpsf-3	63	37.418	WBGene00008642	F10B5.8	73	37.418

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013460	cpsf-3	89	59.213	ENSG00000119203	CPSF3	100	69.565	Homo_sapiens
WBGene00013460	cpsf-3	89	57.413	ENSAPOG00000022087	cpsf3	90	58.349	Acanthochromis_polyacanthus
WBGene00013460	cpsf-3	77	61.792	ENSAPOG00000012241	CPSF3	98	61.792	Acanthochromis_polyacanthus
WBGene00013460	cpsf-3	89	59.213	ENSAMEG00000008493	CPSF3	91	59.213	Ailuropoda_melanoleuca
WBGene00013460	cpsf-3	77	58.899	ENSACIG00000009846	cpsf3	84	58.899	Amphilophus_citrinellus
WBGene00013460	cpsf-3	81	56.649	ENSACIG00000023663	CPSF3	89	56.649	Amphilophus_citrinellus
WBGene00013460	cpsf-3	97	53.680	ENSAOCG00000022056	cpsf3	93	58.902	Amphiprion_ocellaris
WBGene00013460	cpsf-3	89	57.911	ENSAOCG00000010077	CPSF3	89	57.911	Amphiprion_ocellaris
WBGene00013460	cpsf-3	97	53.680	ENSAPEG00000019526	cpsf3	93	57.098	Amphiprion_percula
WBGene00013460	cpsf-3	89	57.911	ENSAPEG00000021167	CPSF3	91	57.911	Amphiprion_percula
WBGene00013460	cpsf-3	90	56.651	ENSATEG00000014525	CPSF3	92	56.651	Anabas_testudineus
WBGene00013460	cpsf-3	89	56.940	ENSATEG00000003959	cpsf3	90	56.940	Anabas_testudineus
WBGene00013460	cpsf-3	91	58.359	ENSAPLG00000006941	CPSF3	92	58.359	Anas_platyrhynchos
WBGene00013460	cpsf-3	83	59.729	ENSACAG00000001759	CPSF3	91	59.729	Anolis_carolinensis
WBGene00013460	cpsf-3	89	56.063	ENSANAG00000031254	CPSF3	90	56.891	Aotus_nancymaae
WBGene00013460	cpsf-3	87	57.878	ENSACLG00000014484	cpsf3	91	57.878	Astatotilapia_calliptera
WBGene00013460	cpsf-3	81	56.822	ENSACLG00000018846	CPSF3	89	56.822	Astatotilapia_calliptera
WBGene00013460	cpsf-3	86	59.868	ENSAMXG00000004786	cpsf3	86	59.868	Astyanax_mexicanus
WBGene00013460	cpsf-3	89	59.213	ENSBTAG00000019735	CPSF3	91	59.213	Bos_taurus
WBGene00013460	cpsf-3	89	59.213	ENSCJAG00000006276	CPSF3	91	59.213	Callithrix_jacchus
WBGene00013460	cpsf-3	89	59.213	ENSCAFG00000003375	CPSF3	86	59.213	Canis_familiaris
WBGene00013460	cpsf-3	85	61.564	ENSCAFG00020026799	CPSF3	95	61.564	Canis_lupus_dingo
WBGene00013460	cpsf-3	89	59.213	ENSCHIG00000013973	CPSF3	91	59.213	Capra_hircus
WBGene00013460	cpsf-3	89	59.213	ENSTSYG00000002967	CPSF3	91	59.213	Carlito_syrichta
WBGene00013460	cpsf-3	87	59.390	ENSCAPG00000013851	CPSF3	91	59.390	Cavia_aperea
WBGene00013460	cpsf-3	89	59.055	ENSCPOG00000011299	CPSF3	91	59.055	Cavia_porcellus
WBGene00013460	cpsf-3	89	59.213	ENSCCAG00000036730	CPSF3	91	59.213	Cebus_capucinus
WBGene00013460	cpsf-3	89	58.861	ENSCATG00000014770	CPSF3	99	61.864	Cercocebus_atys
WBGene00013460	cpsf-3	89	59.055	ENSCLAG00000002727	CPSF3	91	59.055	Chinchilla_lanigera
WBGene00013460	cpsf-3	89	52.913	ENSCSAG00000007125	CPSF3	90	53.071	Chlorocebus_sabaeus
WBGene00013460	cpsf-3	68	46.804	ENSCHOG00000000180	CPSF3	71	46.804	Choloepus_hoffmanni
WBGene00013460	cpsf-3	92	58.257	ENSCPBG00000014074	CPSF3	92	58.257	Chrysemys_picta_bellii
WBGene00013460	cpsf-3	89	58.294	ENSCING00000007214	-	89	58.294	Ciona_intestinalis
WBGene00013460	cpsf-3	81	56.920	ENSCANG00000034435	CPSF3	85	56.920	Colobus_angolensis_palliatus
WBGene00013460	cpsf-3	89	59.055	ENSCGRG00001013134	Cpsf3	91	59.055	Cricetulus_griseus_chok1gshd
WBGene00013460	cpsf-3	89	59.055	ENSCGRG00000018319	Cpsf3	91	59.055	Cricetulus_griseus_crigri
WBGene00013460	cpsf-3	92	55.860	ENSCSEG00000002021	CPSF3	94	55.840	Cynoglossus_semilaevis
WBGene00013460	cpsf-3	89	57.729	ENSCVAG00000015067	CPSF3	90	57.729	Cyprinodon_variegatus
WBGene00013460	cpsf-3	86	60.461	ENSDARG00000027649	cpsf3	86	60.461	Danio_rerio
WBGene00013460	cpsf-3	89	58.491	ENSDNOG00000008940	CPSF3	86	58.491	Dasypus_novemcinctus
WBGene00013460	cpsf-3	89	59.213	ENSDORG00000014263	Cpsf3	95	59.213	Dipodomys_ordii
WBGene00013460	cpsf-3	84	58.794	FBgn0261065	Cpsf73	85	58.794	Drosophila_melanogaster
WBGene00013460	cpsf-3	89	49.921	ENSETEG00000003893	CPSF3	95	49.921	Echinops_telfairi
WBGene00013460	cpsf-3	86	60.132	ENSEBUG00000009018	cpsf3	83	60.265	Eptatretus_burgeri
WBGene00013460	cpsf-3	89	59.213	ENSEASG00005003970	CPSF3	91	59.213	Equus_asinus_asinus
WBGene00013460	cpsf-3	89	59.213	ENSECAG00000019911	CPSF3	95	61.564	Equus_caballus
WBGene00013460	cpsf-3	91	48.527	ENSEEUG00000015422	CPSF3	92	48.527	Erinaceus_europaeus
WBGene00013460	cpsf-3	89	58.044	ENSELUG00000013775	cpsf3	90	58.044	Esox_lucius
WBGene00013460	cpsf-3	89	59.213	ENSFCAG00000007852	CPSF3	91	59.370	Felis_catus
WBGene00013460	cpsf-3	89	57.746	ENSFALG00000006572	CPSF3	96	57.746	Ficedula_albicollis
WBGene00013460	cpsf-3	89	58.898	ENSFDAG00000006317	CPSF3	90	58.898	Fukomys_damarensis
WBGene00013460	cpsf-3	91	56.988	ENSFHEG00000014774	cpsf3	92	56.988	Fundulus_heteroclitus
WBGene00013460	cpsf-3	94	55.081	ENSGMOG00000003157	cpsf3	95	55.081	Gadus_morhua
WBGene00013460	cpsf-3	92	58.104	ENSGALG00000016424	CPSF3	93	57.705	Gallus_gallus
WBGene00013460	cpsf-3	89	58.044	ENSGAFG00000008016	CPSF3	90	58.044	Gambusia_affinis
WBGene00013460	cpsf-3	83	56.314	ENSGAFG00000019449	cpsf3	91	56.314	Gambusia_affinis
WBGene00013460	cpsf-3	62	53.864	ENSGAGG00000025583	CPSF3	84	53.864	Gopherus_agassizii
WBGene00013460	cpsf-3	89	57.692	ENSGGOG00000001757	CPSF3	90	68.602	Gorilla_gorilla
WBGene00013460	cpsf-3	89	57.571	ENSHBUG00000001188	cpsf3	90	57.571	Haplochromis_burtoni
WBGene00013460	cpsf-3	89	58.898	ENSHGLG00000000666	CPSF3	90	58.898	Heterocephalus_glaber_female
WBGene00013460	cpsf-3	89	58.898	ENSHGLG00100007765	CPSF3	90	58.898	Heterocephalus_glaber_male
WBGene00013460	cpsf-3	89	57.886	ENSHCOG00000015957	CPSF3	89	57.886	Hippocampus_comes
WBGene00013460	cpsf-3	89	58.044	ENSHCOG00000007251	cpsf3	90	58.044	Hippocampus_comes
WBGene00013460	cpsf-3	86	58.814	ENSIPUG00000023488	cpsf3	86	58.814	Ictalurus_punctatus
WBGene00013460	cpsf-3	85	61.564	ENSSTOG00000004476	CPSF3	86	61.564	Ictidomys_tridecemlineatus
WBGene00013460	cpsf-3	91	58.760	ENSJJAG00000023415	Cpsf3	92	58.760	Jaculus_jaculus
WBGene00013460	cpsf-3	89	57.256	ENSKMAG00000002806	cpsf3	90	57.256	Kryptolebias_marmoratus
WBGene00013460	cpsf-3	92	56.773	ENSKMAG00000007317	CPSF3	93	56.773	Kryptolebias_marmoratus
WBGene00013460	cpsf-3	85	55.960	ENSLBEG00000020569	cpsf3	86	55.960	Labrus_bergylta
WBGene00013460	cpsf-3	89	57.571	ENSLBEG00000013492	CPSF3	94	57.571	Labrus_bergylta
WBGene00013460	cpsf-3	89	54.331	ENSLACG00000008308	CPSF3	90	54.331	Latimeria_chalumnae
WBGene00013460	cpsf-3	91	57.187	ENSLOCG00000016823	cpsf3	91	57.187	Lepisosteus_oculatus
WBGene00013460	cpsf-3	90	59.091	ENSLAFG00000009467	CPSF3	91	59.091	Loxodonta_africana
WBGene00013460	cpsf-3	89	59.213	ENSMFAG00000001339	CPSF3	94	66.667	Macaca_fascicularis
WBGene00013460	cpsf-3	85	61.564	ENSMMUG00000018038	CPSF3	91	66.667	Macaca_mulatta
WBGene00013460	cpsf-3	89	44.094	ENSMNEG00000039447	CPSF3	90	44.094	Macaca_nemestrina
WBGene00013460	cpsf-3	89	59.213	ENSMLEG00000026825	CPSF3	91	68.534	Mandrillus_leucophaeus
WBGene00013460	cpsf-3	77	59.083	ENSMAMG00000008835	CPSF3	84	59.083	Mastacembelus_armatus
WBGene00013460	cpsf-3	89	58.294	ENSMAMG00000003076	cpsf3	94	57.093	Mastacembelus_armatus
WBGene00013460	cpsf-3	89	57.886	ENSMZEG00005006258	CPSF3	90	57.886	Maylandia_zebra
WBGene00013460	cpsf-3	89	57.571	ENSMZEG00005014358	cpsf3	90	57.571	Maylandia_zebra
WBGene00013460	cpsf-3	90	58.411	ENSMGAG00000013995	CPSF3	94	58.411	Meleagris_gallopavo
WBGene00013460	cpsf-3	80	60.739	ENSMICG00000002363	CPSF3	84	60.739	Microcebus_murinus
WBGene00013460	cpsf-3	85	61.231	ENSMOCG00000020067	Cpsf3	90	61.231	Microtus_ochrogaster
WBGene00013460	cpsf-3	82	58.722	ENSMMOG00000018212	CPSF3	88	58.722	Mola_mola
WBGene00013460	cpsf-3	85	61.564	ENSMODG00000014703	CPSF3	85	61.564	Monodelphis_domestica
WBGene00013460	cpsf-3	83	56.040	ENSMALG00000011474	CPSF3	94	56.040	Monopterus_albus
WBGene00013460	cpsf-3	86	59.143	ENSMALG00000016416	cpsf3	86	59.143	Monopterus_albus
WBGene00013460	cpsf-3	89	58.898	MGP_CAROLIEiJ_G0017640	Cpsf3	91	58.898	Mus_caroli
WBGene00013460	cpsf-3	89	58.898	ENSMUSG00000054309	Cpsf3	96	69.328	Mus_musculus
WBGene00013460	cpsf-3	89	59.055	MGP_PahariEiJ_G0029397	Cpsf3	91	59.055	Mus_pahari
WBGene00013460	cpsf-3	89	58.898	MGP_SPRETEiJ_G0018481	Cpsf3	91	58.898	Mus_spretus
WBGene00013460	cpsf-3	89	59.370	ENSMPUG00000013213	CPSF3	91	59.370	Mustela_putorius_furo
WBGene00013460	cpsf-3	92	58.168	ENSMLUG00000010636	CPSF3	93	58.168	Myotis_lucifugus
WBGene00013460	cpsf-3	89	59.055	ENSNGAG00000019836	Cpsf3	91	59.055	Nannospalax_galili
WBGene00013460	cpsf-3	81	56.822	ENSNBRG00000010525	CPSF3	89	56.822	Neolamprologus_brichardi
WBGene00013460	cpsf-3	89	57.571	ENSNBRG00000004770	cpsf3	90	57.571	Neolamprologus_brichardi
WBGene00013460	cpsf-3	89	59.213	ENSNLEG00000013359	CPSF3	94	67.012	Nomascus_leucogenys
WBGene00013460	cpsf-3	76	54.630	ENSMEUG00000013117	-	77	54.630	Notamacropus_eugenii
WBGene00013460	cpsf-3	89	52.598	ENSOPRG00000008902	CPSF3	91	52.598	Ochotona_princeps
WBGene00013460	cpsf-3	92	57.663	ENSODEG00000003129	CPSF3	93	57.663	Octodon_degus
WBGene00013460	cpsf-3	89	57.571	ENSONIG00000018812	cpsf3	90	57.571	Oreochromis_niloticus
WBGene00013460	cpsf-3	72	58.414	ENSOANG00000008577	CPSF3	89	58.414	Ornithorhynchus_anatinus
WBGene00013460	cpsf-3	92	58.563	ENSOCUG00000003728	CPSF3	93	58.563	Oryctolagus_cuniculus
WBGene00013460	cpsf-3	89	56.940	ENSORLG00000018854	cpsf3	90	56.940	Oryzias_latipes
WBGene00013460	cpsf-3	89	56.940	ENSORLG00020013331	cpsf3	90	56.940	Oryzias_latipes_hni
WBGene00013460	cpsf-3	89	56.940	ENSORLG00015011017	cpsf3	90	56.940	Oryzias_latipes_hsok
WBGene00013460	cpsf-3	89	56.782	ENSOMEG00000010647	cpsf3	86	56.782	Oryzias_melastigma
WBGene00013460	cpsf-3	89	51.496	ENSOGAG00000001680	CPSF3	91	51.496	Otolemur_garnettii
WBGene00013460	cpsf-3	89	59.213	ENSOARG00000015073	CPSF3	91	59.213	Ovis_aries
WBGene00013460	cpsf-3	89	59.213	ENSPPAG00000042457	CPSF3	94	67.012	Pan_paniscus
WBGene00013460	cpsf-3	89	59.213	ENSPPRG00000016790	CPSF3	91	59.370	Panthera_pardus
WBGene00013460	cpsf-3	89	59.213	ENSPTIG00000003920	CPSF3	91	59.213	Panthera_tigris_altaica
WBGene00013460	cpsf-3	89	59.213	ENSPTRG00000011638	CPSF3	94	67.012	Pan_troglodytes
WBGene00013460	cpsf-3	89	59.213	ENSPANG00000016798	CPSF3	94	66.667	Papio_anubis
WBGene00013460	cpsf-3	89	58.360	ENSPKIG00000023646	cpsf3	91	58.472	Paramormyrops_kingsleyae
WBGene00013460	cpsf-3	90	58.879	ENSPSIG00000016144	CPSF3	92	58.879	Pelodiscus_sinensis
WBGene00013460	cpsf-3	79	57.734	ENSPMGG00000006141	-	93	57.734	Periophthalmus_magnuspinnatus
WBGene00013460	cpsf-3	54	44.938	ENSPMGG00000015311	CPSF3	97	44.938	Periophthalmus_magnuspinnatus
WBGene00013460	cpsf-3	89	59.055	ENSPEMG00000017668	Cpsf3	91	59.055	Peromyscus_maniculatus_bairdii
WBGene00013460	cpsf-3	75	64.916	ENSPMAG00000004841	cpsf3	98	64.916	Petromyzon_marinus
WBGene00013460	cpsf-3	90	58.723	ENSPCIG00000009823	CPSF3	94	58.723	Phascolarctos_cinereus
WBGene00013460	cpsf-3	91	57.298	ENSPFOG00000015922	cpsf3	92	57.298	Poecilia_formosa
WBGene00013460	cpsf-3	89	57.571	ENSPFOG00000010418	-	90	57.571	Poecilia_formosa
WBGene00013460	cpsf-3	91	57.298	ENSPLAG00000000882	cpsf3	92	57.298	Poecilia_latipinna
WBGene00013460	cpsf-3	50	48.747	ENSPLAG00000021300	-	85	48.747	Poecilia_latipinna
WBGene00013460	cpsf-3	91	57.298	ENSPMEG00000018309	cpsf3	92	57.298	Poecilia_mexicana
WBGene00013460	cpsf-3	75	64.030	ENSPREG00000004482	CPSF3	81	64.030	Poecilia_reticulata
WBGene00013460	cpsf-3	83	56.314	ENSPREG00000014875	cpsf3	91	56.314	Poecilia_reticulata
WBGene00013460	cpsf-3	89	55.591	ENSPPYG00000012666	CPSF3	90	55.591	Pongo_abelii
WBGene00013460	cpsf-3	75	46.226	ENSPCAG00000015042	CPSF3	81	46.226	Procavia_capensis
WBGene00013460	cpsf-3	70	63.441	ENSPCOG00000023016	CPSF3	81	63.441	Propithecus_coquereli
WBGene00013460	cpsf-3	91	58.605	ENSPVAG00000005324	CPSF3	92	58.605	Pteropus_vampyrus
WBGene00013460	cpsf-3	89	57.571	ENSPNYG00000004405	cpsf3	90	57.571	Pundamilia_nyererei
WBGene00013460	cpsf-3	78	58.834	ENSPNYG00000021047	CPSF3	89	58.834	Pundamilia_nyererei
WBGene00013460	cpsf-3	89	58.110	ENSPNAG00000023060	cpsf3	90	58.110	Pygocentrus_nattereri
WBGene00013460	cpsf-3	89	58.898	ENSRNOG00000052418	Cpsf3	91	58.898	Rattus_norvegicus
WBGene00013460	cpsf-3	89	56.604	ENSRBIG00000041615	CPSF3	91	56.556	Rhinopithecus_bieti
WBGene00013460	cpsf-3	89	59.213	ENSRROG00000033792	CPSF3	91	59.213	Rhinopithecus_roxellana
WBGene00013460	cpsf-3	86	42.285	YLR277C	YSH1	86	42.285	Saccharomyces_cerevisiae
WBGene00013460	cpsf-3	87	58.054	ENSSBOG00000027263	CPSF3	89	58.054	Saimiri_boliviensis_boliviensis
WBGene00013460	cpsf-3	92	58.410	ENSSHAG00000007024	CPSF3	93	58.410	Sarcophilus_harrisii
WBGene00013460	cpsf-3	89	58.202	ENSSFOG00015002108	cpsf3	91	57.797	Scleropages_formosus
WBGene00013460	cpsf-3	85	59.339	ENSSMAG00000020534	CPSF3	88	59.339	Scophthalmus_maximus
WBGene00013460	cpsf-3	89	57.571	ENSSDUG00000018498	CPSF3	90	57.571	Seriola_dumerili
WBGene00013460	cpsf-3	89	57.571	ENSSDUG00000002828	cpsf3	88	57.571	Seriola_dumerili
WBGene00013460	cpsf-3	89	57.571	ENSSLDG00000008469	cpsf3	91	59.567	Seriola_lalandi_dorsalis
WBGene00013460	cpsf-3	89	57.571	ENSSLDG00000005234	CPSF3	90	57.571	Seriola_lalandi_dorsalis
WBGene00013460	cpsf-3	66	67.593	ENSSARG00000005186	CPSF3	69	67.593	Sorex_araneus
WBGene00013460	cpsf-3	90	57.276	ENSSPUG00000015525	CPSF3	91	57.276	Sphenodon_punctatus
WBGene00013460	cpsf-3	89	57.911	ENSSPAG00000002906	CPSF3	89	57.911	Stegastes_partitus
WBGene00013460	cpsf-3	89	57.098	ENSSPAG00000018579	cpsf3	90	57.098	Stegastes_partitus
WBGene00013460	cpsf-3	89	59.213	ENSSSCG00000020799	CPSF3	91	59.213	Sus_scrofa
WBGene00013460	cpsf-3	85	61.730	ENSTGUG00000013016	CPSF3	86	61.730	Taeniopygia_guttata
WBGene00013460	cpsf-3	89	57.729	ENSTRUG00000007030	cpsf3	89	57.729	Takifugu_rubripes
WBGene00013460	cpsf-3	67	65.470	ENSTBEG00000002707	CPSF3	70	65.470	Tupaia_belangeri
WBGene00013460	cpsf-3	77	51.825	ENSTTRG00000000861	CPSF3	78	51.825	Tursiops_truncatus
WBGene00013460	cpsf-3	89	59.213	ENSUAMG00000007535	CPSF3	89	59.213	Ursus_americanus
WBGene00013460	cpsf-3	85	59.370	ENSUMAG00000003676	CPSF3	93	61.863	Ursus_maritimus
WBGene00013460	cpsf-3	83	61.969	ENSVPAG00000008041	CPSF3	91	61.969	Vicugna_pacos
WBGene00013460	cpsf-3	89	59.213	ENSVVUG00000002194	CPSF3	91	59.213	Vulpes_vulpes
WBGene00013460	cpsf-3	89	60.000	ENSXETG00000008263	cpsf3	90	60.000	Xenopus_tropicalis
WBGene00013460	cpsf-3	91	57.165	ENSXCOG00000019695	cpsf3	92	57.165	Xiphophorus_couchianus
WBGene00013460	cpsf-3	91	57.209	ENSXMAG00000009784	cpsf3	93	57.259	Xiphophorus_maculatus
WBGene00013460	cpsf-3	89	58.044	ENSXMAG00000027291	CPSF3	90	58.044	Xiphophorus_maculatus