EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00013680 (Gene tree)
Gene ID: -
Gene Symbol: rpom-1
Alias: -
Full Name: DNA-directed RNA polymerase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 13824 bases
Position: chrI:14552030-14565853
Accession: A5PEY3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y105E8A	RNA_pol	PF00940.19	1e-136	1	1
Y105E8A	RNA_pol	PF00940.19	1e-136	1	1
Y105E8A	RNA_pol	PF00940.19	2.3e-135	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y105E8A.23a.2	-	3510	NM_001129059	Y105E8A.23a.2	1138 (aa)	NP_001122531	Q8WQA3
Y105E8A.23b	-	3564	NM_001129060	Y105E8A.23b	1156 (aa)	NP_001122532	A5PEY3
Y105E8A.23a.1	-	3584	NM_001129059	Y105E8A.23a.1	1138 (aa)	NP_001122531	Q8WQA3

Gene Model

Click here to download WBGene00013680's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013680's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013680	rpom-1	64	35.294	ENSG00000099821	POLRMT	66	54.762	Homo_sapiens
WBGene00013680	rpom-1	53	39.553	ENSAMEG00000002745	POLRMT	68	32.297	Ailuropoda_melanoleuca
WBGene00013680	rpom-1	54	42.016	ENSACIG00000016078	polrmt	51	42.903	Amphilophus_citrinellus
WBGene00013680	rpom-1	54	40.909	ENSAPLG00000003051	POLRMT	58	41.868	Anas_platyrhynchos
WBGene00013680	rpom-1	76	32.459	ENSANAG00000032916	POLRMT	68	32.887	Aotus_nancymaae
WBGene00013680	rpom-1	55	41.955	ENSAMXG00000018258	polrmt	50	42.969	Astyanax_mexicanus
WBGene00013680	rpom-1	76	33.333	ENSCJAG00000012913	POLRMT	68	33.669	Callithrix_jacchus
WBGene00013680	rpom-1	53	40.032	ENSCAFG00020016843	POLRMT	50	40.032	Canis_lupus_dingo
WBGene00013680	rpom-1	56	36.696	ENSCAPG00000016900	POLRMT	59	37.631	Cavia_aperea
WBGene00013680	rpom-1	55	37.842	ENSCPOG00000023061	POLRMT	51	38.690	Cavia_porcellus
WBGene00013680	rpom-1	76	33.626	ENSCCAG00000025014	POLRMT	68	34.193	Cebus_capucinus
WBGene00013680	rpom-1	55	41.395	ENSCPBG00000009869	POLRMT	54	41.395	Chrysemys_picta_bellii
WBGene00013680	rpom-1	54	40.881	ENSCSAVG00000000440	-	74	41.534	Ciona_savignyi
WBGene00013680	rpom-1	53	39.647	ENSCGRG00001021311	Polrmt	53	39.647	Cricetulus_griseus_chok1gshd
WBGene00013680	rpom-1	53	39.647	ENSCGRG00000011134	Polrmt	50	39.647	Cricetulus_griseus_crigri
WBGene00013680	rpom-1	52	38.662	ENSDORG00000014125	Polrmt	52	38.662	Dipodomys_ordii
WBGene00013680	rpom-1	76	34.045	ENSEBUG00000013453	-	91	34.045	Eptatretus_burgeri
WBGene00013680	rpom-1	54	40.094	ENSGMOG00000011829	polrmt	50	41.987	Gadus_morhua
WBGene00013680	rpom-1	76	33.077	ENSGALG00000001377	POLRMT	67	33.520	Gallus_gallus
WBGene00013680	rpom-1	54	41.536	ENSGACG00000012957	polrmt	50	42.419	Gasterosteus_aculeatus
WBGene00013680	rpom-1	53	42.673	ENSGAGG00000005522	POLRMT	52	42.673	Gopherus_agassizii
WBGene00013680	rpom-1	56	38.671	ENSHGLG00100005762	POLRMT	50	39.596	Heterocephalus_glaber_male
WBGene00013680	rpom-1	50	42.051	ENSSTOG00000003431	POLRMT	50	42.051	Ictidomys_tridecemlineatus
WBGene00013680	rpom-1	53	38.240	ENSJJAG00000012916	Polrmt	52	38.080	Jaculus_jaculus
WBGene00013680	rpom-1	56	39.195	ENSMFAG00000031466	POLRMT	52	39.195	Macaca_fascicularis
WBGene00013680	rpom-1	56	39.344	ENSMNEG00000039129	POLRMT	53	39.344	Macaca_nemestrina
WBGene00013680	rpom-1	76	32.563	ENSMGAG00000003243	POLRMT	73	33.109	Meleagris_gallopavo
WBGene00013680	rpom-1	53	40.224	ENSMAUG00000019392	Polrmt	53	39.968	Mesocricetus_auratus
WBGene00013680	rpom-1	53	38.413	ENSMOCG00000008868	Polrmt	50	38.413	Microtus_ochrogaster
WBGene00013680	rpom-1	53	41.760	MGP_CAROLIEiJ_G0015538	Polrmt	100	41.043	Mus_caroli
WBGene00013680	rpom-1	53	41.600	ENSMUSG00000020329	Polrmt	99	40.136	Mus_musculus
WBGene00013680	rpom-1	53	41.600	MGP_PahariEiJ_G0030951	Polrmt	100	40.590	Mus_pahari
WBGene00013680	rpom-1	53	41.760	MGP_SPRETEiJ_G0016356	Polrmt	100	40.363	Mus_spretus
WBGene00013680	rpom-1	54	40.061	ENSMPUG00000009910	POLRMT	68	33.444	Mustela_putorius_furo
WBGene00013680	rpom-1	54	39.813	ENSNGAG00000005498	Polrmt	70	34.002	Nannospalax_galili
WBGene00013680	rpom-1	56	38.346	ENSNLEG00000000718	POLRMT	50	39.441	Nomascus_leucogenys
WBGene00013680	rpom-1	53	43.200	ENSONIG00000002405	polrmt	52	43.200	Oreochromis_niloticus
WBGene00013680	rpom-1	76	33.407	ENSOGAG00000007912	POLRMT	68	33.407	Otolemur_garnettii
WBGene00013680	rpom-1	64	34.856	ENSPPAG00000030853	POLRMT	56	35.705	Pan_paniscus
WBGene00013680	rpom-1	64	33.814	ENSPPAG00000043321	-	55	34.636	Pan_paniscus
WBGene00013680	rpom-1	54	38.744	ENSPPRG00000001547	POLRMT	52	39.528	Panthera_pardus
WBGene00013680	rpom-1	60	36.325	ENSPTRG00000010157	POLRMT	51	36.325	Pan_troglodytes
WBGene00013680	rpom-1	64	33.858	ENSPTRG00000039638	-	56	34.683	Pan_troglodytes
WBGene00013680	rpom-1	53	41.280	ENSPEMG00000011671	Polrmt	53	41.280	Peromyscus_maniculatus_bairdii
WBGene00013680	rpom-1	54	39.596	ENSPCIG00000006103	POLRMT	50	40.415	Phascolarctos_cinereus
WBGene00013680	rpom-1	56	41.841	ENSPPYG00000009282	POLRMT	53	41.841	Pongo_abelii
WBGene00013680	rpom-1	56	37.651	ENSPVAG00000008403	POLRMT	50	38.545	Pteropus_vampyrus
WBGene00013680	rpom-1	53	41.920	ENSRNOG00000024879	Polrmt	50	41.920	Rattus_norvegicus
WBGene00013680	rpom-1	76	32.933	ENSSBOG00000025388	POLRMT	69	32.400	Saimiri_boliviensis_boliviensis
WBGene00013680	rpom-1	53	38.437	ENSSHAG00000009387	-	74	38.437	Sarcophilus_harrisii
WBGene00013680	rpom-1	76	33.111	ENSTGUG00000000621	POLRMT	86	33.260	Taeniopygia_guttata
WBGene00013680	rpom-1	54	42.349	ENSTNIG00000010642	polrmt	59	43.243	Tetraodon_nigroviridis
WBGene00013680	rpom-1	56	40.620	ENSXETG00000006545	polrmt	51	41.578	Xenopus_tropicalis