EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00013792 (Gene tree)
Gene ID: -
Gene Symbol: Y116A8C.13
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 12804 bases
Position: chrIV:16950065-16962868
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y116A8C	ResIII	PF04851.15	1.2e-06	1	1
Y116A8C	ResIII	PF04851.15	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y116A8C.13b	-	2567	NM_001268985	Y116A8C.13b	720 (aa)	NP_001255914	D3NQA7
Y116A8C.13a	-	2569	NM_001268984	Y116A8C.13a	833 (aa)	NP_001255913	Q9U2S8

Gene Model

Click here to download WBGene00013792's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00013792's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00013792	Y116A8C.13	72	36.590	WBGene00004298	rad-54	67	36.299

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00013792	Y116A8C.13	98	33.411	ENSG00000197275	RAD54B	79	35.618	Homo_sapiens
WBGene00013792	Y116A8C.13	88	36.458	ENSG00000265817	FSBP	75	40.253	Homo_sapiens
WBGene00013792	Y116A8C.13	84	34.828	ENSAMEG00000005834	-	80	34.621	Ailuropoda_melanoleuca
WBGene00013792	Y116A8C.13	83	35.458	ENSACIG00000013005	rad54b	81	35.027	Amphilophus_citrinellus
WBGene00013792	Y116A8C.13	83	36.242	ENSAOCG00000008523	rad54b	59	40.472	Amphiprion_ocellaris
WBGene00013792	Y116A8C.13	70	39.963	ENSAPEG00000001673	rad54b	63	39.854	Amphiprion_percula
WBGene00013792	Y116A8C.13	86	34.194	ENSATEG00000001527	rad54b	82	35.414	Anabas_testudineus
WBGene00013792	Y116A8C.13	95	33.532	ENSAPLG00000014366	-	79	34.118	Anas_platyrhynchos
WBGene00013792	Y116A8C.13	97	31.925	ENSACAG00000003671	-	97	32.474	Anolis_carolinensis
WBGene00013792	Y116A8C.13	89	34.833	ENSANAG00000019528	-	85	39.388	Aotus_nancymaae
WBGene00013792	Y116A8C.13	82	36.119	ENSACLG00000007826	rad54b	83	35.984	Astatotilapia_calliptera
WBGene00013792	Y116A8C.13	82	37.517	ENSAMXG00000039985	rad54b	85	37.517	Astyanax_mexicanus
WBGene00013792	Y116A8C.13	83	34.940	ENSBTAG00000000632	RAD54B	79	34.707	Bos_taurus
WBGene00013792	Y116A8C.13	97	33.998	ENSCJAG00000000080	-	85	36.499	Callithrix_jacchus
WBGene00013792	Y116A8C.13	98	33.026	ENSCAFG00000009179	RAD54B	80	35.686	Canis_familiaris
WBGene00013792	Y116A8C.13	86	35.286	ENSCAFG00020012084	-	80	35.553	Canis_lupus_dingo
WBGene00013792	Y116A8C.13	83	34.806	ENSCHIG00000008230	-	69	39.350	Capra_hircus
WBGene00013792	Y116A8C.13	82	35.559	ENSTSYG00000013234	-	78	35.646	Carlito_syrichta
WBGene00013792	Y116A8C.13	85	34.620	ENSCPOG00000011643	-	79	35.020	Cavia_porcellus
WBGene00013792	Y116A8C.13	97	33.372	ENSCCAG00000011754	-	76	40.827	Cebus_capucinus
WBGene00013792	Y116A8C.13	98	33.487	ENSCATG00000030661	-	76	40.145	Cercocebus_atys
WBGene00013792	Y116A8C.13	97	33.060	ENSCLAG00000010476	-	80	34.893	Chinchilla_lanigera
WBGene00013792	Y116A8C.13	98	33.487	ENSCSAG00000012712	-	79	35.475	Chlorocebus_sabaeus
WBGene00013792	Y116A8C.13	83	35.445	ENSCPBG00000003204	-	84	35.445	Chrysemys_picta_bellii
WBGene00013792	Y116A8C.13	98	33.411	ENSCANG00000017939	-	76	40.145	Colobus_angolensis_palliatus
WBGene00013792	Y116A8C.13	98	32.574	ENSCGRG00001020184	Rad54b	82	35.341	Cricetulus_griseus_chok1gshd
WBGene00013792	Y116A8C.13	98	32.725	ENSCGRG00000016752	Rad54b	81	35.657	Cricetulus_griseus_crigri
WBGene00013792	Y116A8C.13	82	34.312	ENSCSEG00000001601	rad54b	84	34.409	Cynoglossus_semilaevis
WBGene00013792	Y116A8C.13	82	36.892	ENSCVAG00000009200	rad54b	81	36.856	Cyprinodon_variegatus
WBGene00013792	Y116A8C.13	84	35.658	ENSDARG00000092134	rad54b	85	40.000	Danio_rerio
WBGene00013792	Y116A8C.13	85	34.270	ENSDNOG00000015535	-	78	34.663	Dasypus_novemcinctus
WBGene00013792	Y116A8C.13	98	33.179	ENSDORG00000002492	Rad54b	82	35.349	Dipodomys_ordii
WBGene00013792	Y116A8C.13	77	34.877	ENSETEG00000010605	-	85	34.398	Echinops_telfairi
WBGene00013792	Y116A8C.13	71	38.772	ENSEBUG00000009104	rad54b	61	38.772	Eptatretus_burgeri
WBGene00013792	Y116A8C.13	83	34.501	ENSEASG00005004021	-	81	34.730	Equus_asinus_asinus
WBGene00013792	Y116A8C.13	83	34.506	ENSECAG00000021949	-	84	34.865	Equus_caballus
WBGene00013792	Y116A8C.13	86	34.545	ENSELUG00000009287	rad54b	75	35.431	Esox_lucius
WBGene00013792	Y116A8C.13	98	32.609	ENSFCAG00000015513	-	80	34.621	Felis_catus
WBGene00013792	Y116A8C.13	95	32.820	ENSFALG00000005467	-	69	39.037	Ficedula_albicollis
WBGene00013792	Y116A8C.13	74	39.273	ENSFDAG00000020541	-	78	35.333	Fukomys_damarensis
WBGene00013792	Y116A8C.13	82	35.431	ENSFHEG00000014382	rad54b	78	35.479	Fundulus_heteroclitus
WBGene00013792	Y116A8C.13	93	32.458	ENSGMOG00000014774	rad54b	88	35.034	Gadus_morhua
WBGene00013792	Y116A8C.13	70	40.255	ENSGALG00000043597	RAD54B	79	34.641	Gallus_gallus
WBGene00013792	Y116A8C.13	83	36.303	ENSGAFG00000007901	rad54b	84	36.011	Gambusia_affinis
WBGene00013792	Y116A8C.13	86	35.854	ENSGACG00000009128	rad54b	77	36.849	Gasterosteus_aculeatus
WBGene00013792	Y116A8C.13	83	35.484	ENSGAGG00000018747	-	78	34.387	Gopherus_agassizii
WBGene00013792	Y116A8C.13	98	32.910	ENSGGOG00000023516	-	80	35.428	Gorilla_gorilla
WBGene00013792	Y116A8C.13	97	33.877	ENSHBUG00000016017	rad54b	76	35.984	Haplochromis_burtoni
WBGene00013792	Y116A8C.13	85	35.039	ENSHGLG00000008263	RAD54B	78	35.135	Heterocephalus_glaber_female
WBGene00013792	Y116A8C.13	85	34.375	ENSHGLG00100008108	-	78	34.450	Heterocephalus_glaber_male
WBGene00013792	Y116A8C.13	85	34.073	ENSHCOG00000004764	rad54b	91	34.115	Hippocampus_comes
WBGene00013792	Y116A8C.13	85	35.264	ENSIPUG00000018531	rad54b	78	35.602	Ictalurus_punctatus
WBGene00013792	Y116A8C.13	93	34.061	ENSSTOG00000010791	-	78	35.744	Ictidomys_tridecemlineatus
WBGene00013792	Y116A8C.13	98	33.679	ENSJJAG00000010314	Rad54b	79	36.546	Jaculus_jaculus
WBGene00013792	Y116A8C.13	83	35.839	ENSKMAG00000004744	rad54b	85	35.957	Kryptolebias_marmoratus
WBGene00013792	Y116A8C.13	70	43.836	ENSLACG00000000859	-	74	39.929	Latimeria_chalumnae
WBGene00013792	Y116A8C.13	75	39.763	ENSLOCG00000010100	rad54b	84	35.935	Lepisosteus_oculatus
WBGene00013792	Y116A8C.13	71	39.531	ENSLAFG00000015315	-	89	34.218	Loxodonta_africana
WBGene00013792	Y116A8C.13	84	35.829	ENSMFAG00000031629	-	76	40.145	Macaca_fascicularis
WBGene00013792	Y116A8C.13	84	35.829	ENSMMUG00000005659	-	79	35.475	Macaca_mulatta
WBGene00013792	Y116A8C.13	84	35.695	ENSMNEG00000016408	-	81	35.341	Macaca_nemestrina
WBGene00013792	Y116A8C.13	98	33.487	ENSMLEG00000006946	-	79	35.475	Mandrillus_leucophaeus
WBGene00013792	Y116A8C.13	86	34.106	ENSMAMG00000012269	rad54b	81	35.484	Mastacembelus_armatus
WBGene00013792	Y116A8C.13	97	33.877	ENSMZEG00005005281	rad54b	86	35.510	Maylandia_zebra
WBGene00013792	Y116A8C.13	83	34.908	ENSMGAG00000012024	-	79	35.433	Meleagris_gallopavo
WBGene00013792	Y116A8C.13	84	35.341	ENSMAUG00000013586	Rad54b	82	35.341	Mesocricetus_auratus
WBGene00013792	Y116A8C.13	83	35.628	ENSMICG00000000754	-	82	35.493	Microcebus_murinus
WBGene00013792	Y116A8C.13	84	35.436	ENSMOCG00000020035	Rad54b	81	35.349	Microtus_ochrogaster
WBGene00013792	Y116A8C.13	80	35.090	ENSMMOG00000003394	rad54b	80	34.530	Mola_mola
WBGene00013792	Y116A8C.13	83	35.436	ENSMODG00000007343	-	88	35.600	Monodelphis_domestica
WBGene00013792	Y116A8C.13	66	40.347	ENSMALG00000001520	rad54b	83	40.190	Monopterus_albus
WBGene00013792	Y116A8C.13	83	34.492	MGP_CAROLIEiJ_G0025810	Rad54b	81	34.400	Mus_caroli
WBGene00013792	Y116A8C.13	83	34.626	ENSMUSG00000078773	Rad54b	81	34.667	Mus_musculus
WBGene00013792	Y116A8C.13	83	34.853	MGP_PahariEiJ_G0023933	Rad54b	80	34.877	Mus_pahari
WBGene00013792	Y116A8C.13	85	34.686	MGP_SPRETEiJ_G0026758	Rad54b	81	35.067	Mus_spretus
WBGene00013792	Y116A8C.13	95	33.100	ENSMPUG00000008878	-	89	35.535	Mustela_putorius_furo
WBGene00013792	Y116A8C.13	83	35.358	ENSMLUG00000008953	-	78	35.358	Myotis_lucifugus
WBGene00013792	Y116A8C.13	98	33.793	ENSNGAG00000017537	Rad54b	80	36.096	Nannospalax_galili
WBGene00013792	Y116A8C.13	98	33.830	ENSNBRG00000013394	rad54b	84	35.894	Neolamprologus_brichardi
WBGene00013792	Y116A8C.13	84	35.753	ENSNLEG00000003062	-	75	40.253	Nomascus_leucogenys
WBGene00013792	Y116A8C.13	82	34.177	ENSMEUG00000012426	-	60	45.349	Notamacropus_eugenii
WBGene00013792	Y116A8C.13	85	35.060	ENSODEG00000019564	-	79	34.724	Octodon_degus
WBGene00013792	Y116A8C.13	74	38.542	ENSODEG00000002650	-	74	39.781	Octodon_degus
WBGene00013792	Y116A8C.13	86	34.363	ENSONIG00000006067	rad54b	85	32.943	Oreochromis_niloticus
WBGene00013792	Y116A8C.13	88	35.565	ENSOANG00000011348	-	73	39.130	Ornithorhynchus_anatinus
WBGene00013792	Y116A8C.13	95	33.136	ENSOCUG00000016478	-	79	34.529	Oryctolagus_cuniculus
WBGene00013792	Y116A8C.13	85	35.395	ENSORLG00000008918	rad54b	84	39.162	Oryzias_latipes
WBGene00013792	Y116A8C.13	76	37.778	ENSORLG00020012171	rad54b	84	38.798	Oryzias_latipes_hni
WBGene00013792	Y116A8C.13	85	35.356	ENSORLG00015018536	rad54b	77	35.128	Oryzias_latipes_hsok
WBGene00013792	Y116A8C.13	80	36.100	ENSOMEG00000004345	rad54b	90	35.417	Oryzias_melastigma
WBGene00013792	Y116A8C.13	82	35.695	ENSOGAG00000007854	-	78	35.422	Otolemur_garnettii
WBGene00013792	Y116A8C.13	83	34.579	ENSOARG00000007691	-	89	34.707	Ovis_aries
WBGene00013792	Y116A8C.13	98	32.448	ENSPPAG00000029572	-	79	34.037	Pan_paniscus
WBGene00013792	Y116A8C.13	98	32.494	ENSPPRG00000007571	-	80	34.487	Panthera_pardus
WBGene00013792	Y116A8C.13	88	35.746	ENSPTIG00000012670	-	75	38.989	Panthera_tigris_altaica
WBGene00013792	Y116A8C.13	98	33.256	ENSPTRG00000020427	-	75	40.253	Pan_troglodytes
WBGene00013792	Y116A8C.13	98	33.487	ENSPANG00000019566	-	79	35.475	Papio_anubis
WBGene00013792	Y116A8C.13	86	35.651	ENSPKIG00000014974	rad54b	77	35.995	Paramormyrops_kingsleyae
WBGene00013792	Y116A8C.13	83	35.013	ENSPSIG00000002383	-	89	35.013	Pelodiscus_sinensis
WBGene00013792	Y116A8C.13	98	33.487	ENSPEMG00000012133	Rad54b	81	35.925	Peromyscus_maniculatus_bairdii
WBGene00013792	Y116A8C.13	71	38.919	ENSPMAG00000002916	rad54b	89	33.782	Petromyzon_marinus
WBGene00013792	Y116A8C.13	98	32.914	ENSPCIG00000020151	-	86	35.931	Phascolarctos_cinereus
WBGene00013792	Y116A8C.13	97	34.415	ENSPFOG00000023411	rad54b	75	36.474	Poecilia_formosa
WBGene00013792	Y116A8C.13	97	34.415	ENSPLAG00000010430	rad54b	75	36.474	Poecilia_latipinna
WBGene00013792	Y116A8C.13	97	34.299	ENSPMEG00000016873	rad54b	86	36.461	Poecilia_mexicana
WBGene00013792	Y116A8C.13	97	33.756	ENSPREG00000018443	rad54b	82	35.618	Poecilia_reticulata
WBGene00013792	Y116A8C.13	98	33.372	ENSPPYG00000018750	-	79	35.561	Pongo_abelii
WBGene00013792	Y116A8C.13	85	35.433	ENSPCOG00000026845	-	79	35.580	Propithecus_coquereli
WBGene00013792	Y116A8C.13	71	38.989	ENSPVAG00000000261	-	63	38.989	Pteropus_vampyrus
WBGene00013792	Y116A8C.13	84	35.724	ENSPNYG00000018303	rad54b	88	35.591	Pundamilia_nyererei
WBGene00013792	Y116A8C.13	85	36.255	ENSPNAG00000000295	rad54b	85	36.240	Pygocentrus_nattereri
WBGene00013792	Y116A8C.13	86	33.933	ENSRNOG00000039949	Rad54b	82	33.818	Rattus_norvegicus
WBGene00013792	Y116A8C.13	98	33.179	ENSRBIG00000020419	-	79	35.128	Rhinopithecus_bieti
WBGene00013792	Y116A8C.13	98	33.411	ENSRROG00000039897	-	79	35.397	Rhinopithecus_roxellana
WBGene00013792	Y116A8C.13	87	30.984	YBR073W	RDH54	80	31.100	Saccharomyces_cerevisiae
WBGene00013792	Y116A8C.13	97	33.490	ENSSBOG00000028501	-	78	35.397	Saimiri_boliviensis_boliviensis
WBGene00013792	Y116A8C.13	82	36.016	ENSSHAG00000017038	-	78	36.153	Sarcophilus_harrisii
WBGene00013792	Y116A8C.13	70	41.002	ENSSFOG00015008483	rad54b	85	40.768	Scleropages_formosus
WBGene00013792	Y116A8C.13	97	33.642	ENSSMAG00000018659	rad54b	82	35.705	Scophthalmus_maximus
WBGene00013792	Y116A8C.13	88	34.955	ENSSDUG00000001122	rad54b	76	35.600	Seriola_dumerili
WBGene00013792	Y116A8C.13	88	34.827	ENSSLDG00000013787	rad54b	84	34.795	Seriola_lalandi_dorsalis
WBGene00013792	Y116A8C.13	96	33.098	ENSSPUG00000016497	-	82	34.933	Sphenodon_punctatus
WBGene00013792	Y116A8C.13	96	33.333	ENSSPAG00000012800	rad54b	88	33.411	Stegastes_partitus
WBGene00013792	Y116A8C.13	83	34.718	ENSSSCG00000006101	-	90	35.027	Sus_scrofa
WBGene00013792	Y116A8C.13	95	32.151	ENSTGUG00000011880	-	79	34.441	Taeniopygia_guttata
WBGene00013792	Y116A8C.13	84	35.403	ENSTRUG00000010015	rad54b	76	35.561	Takifugu_rubripes
WBGene00013792	Y116A8C.13	83	34.054	ENSTTRG00000006312	-	79	33.778	Tursiops_truncatus
WBGene00013792	Y116A8C.13	84	35.224	ENSUMAG00000016401	-	80	35.020	Ursus_maritimus
WBGene00013792	Y116A8C.13	83	35.523	ENSVPAG00000003157	-	79	35.255	Vicugna_pacos
WBGene00013792	Y116A8C.13	67	51.190	ENSXETG00000025924	rad54b	89	30.178	Xenopus_tropicalis
WBGene00013792	Y116A8C.13	97	34.067	ENSXMAG00000013141	rad54b	83	35.859	Xiphophorus_maculatus