EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00014165 (Gene tree)
Gene ID: -
Gene Symbol: puf-12
Alias: -
Full Name: Pumilio domain-containing protein 12
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 2750 bases
Position: chrII:10100310-10103059
Accession: Q09622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ZK945	CPL	PF08144.11	8.8e-32	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ZK945.3	-	2508	NM_063777	ZK945.3	766 (aa)	NP_496178	Q09622

Gene Model

Click here to download WBGene00014165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00014165's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00014165	puf-12	64	32.193	ENSG00000080608	PUM3	75	32.193	Homo_sapiens
WBGene00014165	puf-12	64	32.596	ENSAMEG00000012187	PUM3	75	32.596	Ailuropoda_melanoleuca
WBGene00014165	puf-12	62	30.453	ENSAPEG00000020523	pum3	78	30.453	Amphiprion_percula
WBGene00014165	puf-12	67	30.134	ENSATEG00000005799	pum3	79	30.134	Anabas_testudineus
WBGene00014165	puf-12	64	32.465	ENSAPLG00000002920	PUM3	79	32.465	Anas_platyrhynchos
WBGene00014165	puf-12	62	31.875	ENSACAG00000003174	PUM3	80	31.667	Anolis_carolinensis
WBGene00014165	puf-12	64	32.596	ENSANAG00000024520	PUM3	75	32.596	Aotus_nancymaae
WBGene00014165	puf-12	70	30.037	ENSACLG00000001017	pum3	83	30.037	Astatotilapia_calliptera
WBGene00014165	puf-12	66	33.333	ENSAMXG00000020911	pum3	80	33.333	Astyanax_mexicanus
WBGene00014165	puf-12	64	33.199	ENSBTAG00000013357	PUM3	75	33.199	Bos_taurus
WBGene00014165	puf-12	64	32.596	ENSCJAG00000010917	PUM3	75	32.596	Callithrix_jacchus
WBGene00014165	puf-12	64	32.596	ENSCAFG00000002035	PUM3	75	32.596	Canis_familiaris
WBGene00014165	puf-12	64	32.596	ENSCAFG00020026867	PUM3	75	32.596	Canis_lupus_dingo
WBGene00014165	puf-12	64	32.797	ENSCHIG00000021559	PUM3	75	32.797	Capra_hircus
WBGene00014165	puf-12	64	32.394	ENSTSYG00000007481	PUM3	75	32.394	Carlito_syrichta
WBGene00014165	puf-12	66	32.359	ENSCAPG00000010592	-	78	32.359	Cavia_aperea
WBGene00014165	puf-12	64	32.394	ENSCPOG00000008552	-	75	32.394	Cavia_porcellus
WBGene00014165	puf-12	64	32.596	ENSCCAG00000032650	PUM3	75	32.596	Cebus_capucinus
WBGene00014165	puf-12	64	32.596	ENSCATG00000024880	PUM3	75	32.596	Cercocebus_atys
WBGene00014165	puf-12	64	32.998	ENSCLAG00000011892	PUM3	75	32.998	Chinchilla_lanigera
WBGene00014165	puf-12	64	32.193	ENSCSAG00000008691	PUM3	79	31.538	Chlorocebus_sabaeus
WBGene00014165	puf-12	64	31.791	ENSCPBG00000025470	PUM3	73	31.791	Chrysemys_picta_bellii
WBGene00014165	puf-12	65	34.170	ENSCING00000024199	-	89	34.170	Ciona_intestinalis
WBGene00014165	puf-12	67	32.957	ENSCSAVG00000006072	-	95	32.882	Ciona_savignyi
WBGene00014165	puf-12	64	32.394	ENSCANG00000006142	PUM3	75	32.394	Colobus_angolensis_palliatus
WBGene00014165	puf-12	64	31.992	ENSCGRG00001016402	Pum3	75	31.992	Cricetulus_griseus_chok1gshd
WBGene00014165	puf-12	64	31.992	ENSCGRG00000010207	Pum3	75	31.992	Cricetulus_griseus_crigri
WBGene00014165	puf-12	66	31.335	ENSDARG00000087779	pum3	80	31.335	Danio_rerio
WBGene00014165	puf-12	64	32.465	ENSETEG00000015331	PUM3	75	32.465	Echinops_telfairi
WBGene00014165	puf-12	64	32.394	ENSEASG00005010350	PUM3	75	32.394	Equus_asinus_asinus
WBGene00014165	puf-12	64	32.394	ENSECAG00000017193	PUM3	75	32.394	Equus_caballus
WBGene00014165	puf-12	62	30.498	ENSELUG00000002215	pum3	73	30.498	Esox_lucius
WBGene00014165	puf-12	64	33.066	ENSFALG00000010509	PUM3	76	33.066	Ficedula_albicollis
WBGene00014165	puf-12	64	32.797	ENSFDAG00000021027	PUM3	75	32.797	Fukomys_damarensis
WBGene00014165	puf-12	64	30.986	ENSGMOG00000014217	pum3	91	30.986	Gadus_morhua
WBGene00014165	puf-12	64	32.665	ENSGALG00000010178	PUM3	76	32.665	Gallus_gallus
WBGene00014165	puf-12	67	30.077	ENSGACG00000017878	pum3	94	30.077	Gasterosteus_aculeatus
WBGene00014165	puf-12	64	31.187	ENSGAGG00000018983	PUM3	79	31.187	Gopherus_agassizii
WBGene00014165	puf-12	64	31.992	ENSGGOG00000006143	PUM3	75	31.992	Gorilla_gorilla
WBGene00014165	puf-12	64	32.596	ENSHGLG00000015868	-	75	32.596	Heterocephalus_glaber_female
WBGene00014165	puf-12	64	32.596	ENSHGLG00100018825	PUM3	75	32.596	Heterocephalus_glaber_male
WBGene00014165	puf-12	67	31.985	ENSHCOG00000010306	pum3	77	31.985	Hippocampus_comes
WBGene00014165	puf-12	68	31.471	ENSIPUG00000024801	pum3	83	31.471	Ictalurus_punctatus
WBGene00014165	puf-12	64	32.394	ENSSTOG00000009586	PUM3	75	32.394	Ictidomys_tridecemlineatus
WBGene00014165	puf-12	64	32.596	ENSJJAG00000012563	Pum3	75	32.596	Jaculus_jaculus
WBGene00014165	puf-12	67	30.250	ENSLBEG00000012213	pum3	78	30.250	Labrus_bergylta
WBGene00014165	puf-12	62	31.470	ENSLACG00000008312	PUM3	74	31.470	Latimeria_chalumnae
WBGene00014165	puf-12	66	32.108	ENSLOCG00000012529	pum3	81	32.108	Lepisosteus_oculatus
WBGene00014165	puf-12	64	32.394	ENSLAFG00000017341	PUM3	75	32.394	Loxodonta_africana
WBGene00014165	puf-12	64	31.791	ENSMFAG00000001430	PUM3	75	31.791	Macaca_fascicularis
WBGene00014165	puf-12	64	31.791	ENSMMUG00000002362	PUM3	74	31.791	Macaca_mulatta
WBGene00014165	puf-12	64	31.791	ENSMNEG00000035288	PUM3	75	31.791	Macaca_nemestrina
WBGene00014165	puf-12	64	32.394	ENSMLEG00000034820	PUM3	75	32.394	Mandrillus_leucophaeus
WBGene00014165	puf-12	66	31.323	ENSMAMG00000022861	pum3	77	31.323	Mastacembelus_armatus
WBGene00014165	puf-12	70	30.037	ENSMZEG00005014205	pum3	81	30.037	Maylandia_zebra
WBGene00014165	puf-12	62	30.189	ENSMGAG00000002255	PUM3	81	30.189	Meleagris_gallopavo
WBGene00014165	puf-12	64	31.992	ENSMAUG00000009733	Pum3	75	31.992	Mesocricetus_auratus
WBGene00014165	puf-12	64	32.797	ENSMICG00000045916	PUM3	65	32.797	Microcebus_murinus
WBGene00014165	puf-12	64	30.785	ENSMOCG00000014830	-	77	30.785	Microtus_ochrogaster
WBGene00014165	puf-12	64	32.193	ENSMOCG00000019519	-	75	32.193	Microtus_ochrogaster
WBGene00014165	puf-12	64	32.193	ENSMODG00000015417	PUM3	67	32.193	Monodelphis_domestica
WBGene00014165	puf-12	67	30.443	ENSMALG00000022164	pum3	76	30.443	Monopterus_albus
WBGene00014165	puf-12	64	31.992	MGP_CAROLIEiJ_G0022845	Pum3	75	31.992	Mus_caroli
WBGene00014165	puf-12	64	31.992	ENSMUSG00000041360	Pum3	75	31.992	Mus_musculus
WBGene00014165	puf-12	64	31.791	MGP_PahariEiJ_G0014338	Pum3	75	31.791	Mus_pahari
WBGene00014165	puf-12	64	32.193	MGP_SPRETEiJ_G0023763	Pum3	75	32.193	Mus_spretus
WBGene00014165	puf-12	64	31.590	ENSMPUG00000005125	PUM3	75	31.590	Mustela_putorius_furo
WBGene00014165	puf-12	64	31.791	ENSMLUG00000002309	PUM3	75	31.791	Myotis_lucifugus
WBGene00014165	puf-12	64	31.388	ENSNGAG00000019468	Pum3	75	31.388	Nannospalax_galili
WBGene00014165	puf-12	64	32.394	ENSNLEG00000008712	PUM3	75	32.394	Nomascus_leucogenys
WBGene00014165	puf-12	64	32.794	ENSODEG00000003625	-	75	32.794	Octodon_degus
WBGene00014165	puf-12	64	30.986	ENSODEG00000016477	-	74	30.986	Octodon_degus
WBGene00014165	puf-12	67	30.326	ENSONIG00000012733	pum3	79	30.326	Oreochromis_niloticus
WBGene00014165	puf-12	63	30.754	ENSOANG00000014995	PUM3	88	30.754	Ornithorhynchus_anatinus
WBGene00014165	puf-12	64	31.590	ENSOCUG00000004189	-	75	32.596	Oryctolagus_cuniculus
WBGene00014165	puf-12	64	31.791	ENSOCUG00000026104	-	75	32.797	Oryctolagus_cuniculus
WBGene00014165	puf-12	64	32.394	ENSOGAG00000008125	-	75	32.394	Otolemur_garnettii
WBGene00014165	puf-12	64	32.797	ENSOARG00000013337	PUM3	75	32.797	Ovis_aries
WBGene00014165	puf-12	64	31.992	ENSPPAG00000041337	PUM3	75	31.992	Pan_paniscus
WBGene00014165	puf-12	64	32.193	ENSPPRG00000000809	PUM3	75	32.193	Panthera_pardus
WBGene00014165	puf-12	64	32.394	ENSPTIG00000021934	PUM3	75	32.394	Panthera_tigris_altaica
WBGene00014165	puf-12	64	31.992	ENSPTRG00000020735	PUM3	75	31.992	Pan_troglodytes
WBGene00014165	puf-12	64	32.394	ENSPANG00000025118	PUM3	75	32.394	Papio_anubis
WBGene00014165	puf-12	62	32.919	ENSPKIG00000022249	pum3	75	32.035	Paramormyrops_kingsleyae
WBGene00014165	puf-12	64	31.590	ENSPSIG00000016272	PUM3	77	31.590	Pelodiscus_sinensis
WBGene00014165	puf-12	61	30.638	ENSPMGG00000021261	pum3	92	30.638	Periophthalmus_magnuspinnatus
WBGene00014165	puf-12	64	31.590	ENSPCIG00000030598	PUM3	65	31.590	Phascolarctos_cinereus
WBGene00014165	puf-12	64	33.534	ENSPFOG00000001719	pum3	81	33.534	Poecilia_formosa
WBGene00014165	puf-12	64	33.534	ENSPLAG00000020010	pum3	77	33.534	Poecilia_latipinna
WBGene00014165	puf-12	64	33.534	ENSPMEG00000017451	pum3	77	33.534	Poecilia_mexicana
WBGene00014165	puf-12	64	32.596	ENSPPYG00000019255	PUM3	75	32.596	Pongo_abelii
WBGene00014165	puf-12	52	32.432	ENSPCAG00000005797	PUM3	58	32.432	Procavia_capensis
WBGene00014165	puf-12	64	33.199	ENSPCOG00000027325	PUM3	75	33.199	Propithecus_coquereli
WBGene00014165	puf-12	64	32.596	ENSPVAG00000016135	PUM3	71	32.596	Pteropus_vampyrus
WBGene00014165	puf-12	70	30.037	ENSPNYG00000016124	pum3	83	30.037	Pundamilia_nyererei
WBGene00014165	puf-12	64	32.454	ENSPNAG00000026524	pum3	77	32.454	Pygocentrus_nattereri
WBGene00014165	puf-12	64	32.797	ENSRNOG00000012574	Pum3	75	32.797	Rattus_norvegicus
WBGene00014165	puf-12	64	32.797	ENSRNOG00000048356	RGD1308750	75	32.797	Rattus_norvegicus
WBGene00014165	puf-12	64	32.525	ENSRBIG00000036924	PUM3	75	32.525	Rhinopithecus_bieti
WBGene00014165	puf-12	64	32.394	ENSRROG00000041089	PUM3	75	32.394	Rhinopithecus_roxellana
WBGene00014165	puf-12	64	32.797	ENSSBOG00000028066	PUM3	75	32.797	Saimiri_boliviensis_boliviensis
WBGene00014165	puf-12	64	31.590	ENSSHAG00000003730	PUM3	75	31.590	Sarcophilus_harrisii
WBGene00014165	puf-12	66	31.008	ENSSFOG00015018778	pum3	79	30.962	Scleropages_formosus
WBGene00014165	puf-12	67	30.250	ENSSMAG00000013236	pum3	78	30.250	Scophthalmus_maximus
WBGene00014165	puf-12	75	30.085	ENSSDUG00000001887	pum3	86	30.085	Seriola_dumerili
WBGene00014165	puf-12	66	31.008	ENSSPUG00000001707	PUM3	80	31.008	Sphenodon_punctatus
WBGene00014165	puf-12	64	31.791	ENSSSCG00000005227	PUM3	75	31.791	Sus_scrofa
WBGene00014165	puf-12	64	32.465	ENSTGUG00000005339	PUM3	80	32.432	Taeniopygia_guttata
WBGene00014165	puf-12	66	31.202	ENSTNIG00000010325	pum3	81	31.202	Tetraodon_nigroviridis
WBGene00014165	puf-12	52	32.432	ENSTTRG00000001062	PUM3	59	32.432	Tursiops_truncatus
WBGene00014165	puf-12	60	30.303	ENSUMAG00000018443	PUM3	88	30.303	Ursus_maritimus
WBGene00014165	puf-12	64	32.797	ENSVPAG00000010766	PUM3	74	32.797	Vicugna_pacos
WBGene00014165	puf-12	64	32.596	ENSVVUG00000006527	PUM3	75	32.596	Vulpes_vulpes
WBGene00014165	puf-12	64	30.645	ENSXETG00000011707	pum3	76	30.645	Xenopus_tropicalis
WBGene00014165	puf-12	64	30.739	ENSXCOG00000006725	pum3	81	30.739	Xiphophorus_couchianus
WBGene00014165	puf-12	64	32.530	ENSXMAG00000002926	pum3	77	32.530	Xiphophorus_maculatus