EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00016740 (Gene tree)
Gene ID: -
Gene Symbol: C48B6.2
Alias: -
Full Name: Putative 40S ribosomal protein S4-like
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 795 bases
Position: chrI:6916766-6917560
Accession: O01513
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C48B6	S4	PF01479.25	6.5e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C48B6.2	-	644	NM_059571	C48B6.2	183 (aa)	NP_491972	O01513

Gene Model

Click here to download WBGene00016740's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00016740's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00016740	C48B6.2	99	51.099	ENSAPOG00000014720	imp3	99	51.099	Acanthochromis_polyacanthus
WBGene00016740	C48B6.2	99	51.099	ENSAMEG00000019247	IMP3	99	51.099	Ailuropoda_melanoleuca
WBGene00016740	C48B6.2	98	50.838	ENSACIG00000022070	imp3	96	50.838	Amphilophus_citrinellus
WBGene00016740	C48B6.2	99	51.648	ENSAOCG00000015761	imp3	99	51.648	Amphiprion_ocellaris
WBGene00016740	C48B6.2	99	51.099	ENSAPEG00000005250	imp3	99	51.099	Amphiprion_percula
WBGene00016740	C48B6.2	99	53.297	ENSATEG00000020021	imp3	99	53.297	Anabas_testudineus
WBGene00016740	C48B6.2	99	49.730	ENSACAG00000016259	IMP3	99	49.730	Anolis_carolinensis
WBGene00016740	C48B6.2	99	51.099	ENSANAG00000016669	-	99	51.099	Aotus_nancymaae
WBGene00016740	C48B6.2	99	43.956	ENSANAG00000036874	-	99	43.956	Aotus_nancymaae
WBGene00016740	C48B6.2	99	53.297	ENSACLG00000009929	imp3	99	53.297	Astatotilapia_calliptera
WBGene00016740	C48B6.2	95	49.133	ENSAMXG00000018715	imp3	98	49.133	Astyanax_mexicanus
WBGene00016740	C48B6.2	99	51.099	ENSCJAG00000044585	IMP3	99	51.099	Callithrix_jacchus
WBGene00016740	C48B6.2	99	48.901	ENSCAFG00000018039	IMP3	81	48.901	Canis_familiaris
WBGene00016740	C48B6.2	99	48.901	ENSCAFG00020003760	-	99	48.901	Canis_lupus_dingo
WBGene00016740	C48B6.2	99	38.674	ENSCAFG00020006737	-	99	40.659	Canis_lupus_dingo
WBGene00016740	C48B6.2	99	51.648	ENSCHIG00000006295	IMP3	99	51.648	Capra_hircus
WBGene00016740	C48B6.2	99	51.648	ENSTSYG00000005503	IMP3	99	51.648	Carlito_syrichta
WBGene00016740	C48B6.2	99	51.648	ENSCPOG00000012016	IMP3	99	51.648	Cavia_porcellus
WBGene00016740	C48B6.2	99	51.099	ENSCCAG00000002712	-	99	51.099	Cebus_capucinus
WBGene00016740	C48B6.2	98	46.111	ENSCCAG00000023378	-	98	45.349	Cebus_capucinus
WBGene00016740	C48B6.2	99	51.099	ENSCATG00000015188	IMP3	99	51.099	Cercocebus_atys
WBGene00016740	C48B6.2	99	51.099	ENSCSAG00000019732	IMP3	99	51.099	Chlorocebus_sabaeus
WBGene00016740	C48B6.2	99	51.099	ENSCHOG00000012046	IMP3	99	51.099	Choloepus_hoffmanni
WBGene00016740	C48B6.2	99	47.283	ENSCPBG00000021662	IMP3	99	47.283	Chrysemys_picta_bellii
WBGene00016740	C48B6.2	99	48.066	ENSCING00000004233	-	100	48.066	Ciona_intestinalis
WBGene00016740	C48B6.2	99	48.619	ENSCSAVG00000000698	-	100	48.619	Ciona_savignyi
WBGene00016740	C48B6.2	99	51.099	ENSCANG00000018342	IMP3	99	51.099	Colobus_angolensis_palliatus
WBGene00016740	C48B6.2	99	50.549	ENSCGRG00001001326	Imp3	99	50.549	Cricetulus_griseus_chok1gshd
WBGene00016740	C48B6.2	99	50.549	ENSCGRG00000018907	Imp3	99	50.549	Cricetulus_griseus_crigri
WBGene00016740	C48B6.2	100	50.273	ENSCSEG00000017200	imp3	100	50.273	Cynoglossus_semilaevis
WBGene00016740	C48B6.2	99	45.652	ENSCVAG00000019511	imp3	99	45.652	Cyprinodon_variegatus
WBGene00016740	C48B6.2	99	50.000	ENSDARG00000115266	imp3	99	50.000	Danio_rerio
WBGene00016740	C48B6.2	99	50.000	ENSDNOG00000015787	IMP3	80	50.000	Dasypus_novemcinctus
WBGene00016740	C48B6.2	99	50.000	ENSDORG00000029301	Imp3	99	50.000	Dipodomys_ordii
WBGene00016740	C48B6.2	99	49.724	FBgn0034232	CG4866	100	49.724	Drosophila_melanogaster
WBGene00016740	C48B6.2	99	51.648	ENSETEG00000004278	IMP3	99	51.648	Echinops_telfairi
WBGene00016740	C48B6.2	99	49.171	ENSEBUG00000002343	imp3	99	49.171	Eptatretus_burgeri
WBGene00016740	C48B6.2	99	52.198	ENSEASG00005015693	IMP3	99	52.198	Equus_asinus_asinus
WBGene00016740	C48B6.2	99	51.648	ENSECAG00000015786	IMP3	99	51.648	Equus_caballus
WBGene00016740	C48B6.2	99	54.396	ENSELUG00000023264	imp3	99	54.396	Esox_lucius
WBGene00016740	C48B6.2	99	51.648	ENSFCAG00000040328	IMP3	99	51.648	Felis_catus
WBGene00016740	C48B6.2	57	45.192	ENSFALG00000014811	IMP3	97	42.188	Ficedula_albicollis
WBGene00016740	C48B6.2	99	51.648	ENSFDAG00000018422	IMP3	99	51.648	Fukomys_damarensis
WBGene00016740	C48B6.2	99	52.198	ENSFHEG00000016954	imp3	99	52.198	Fundulus_heteroclitus
WBGene00016740	C48B6.2	99	50.549	ENSGMOG00000018162	imp3	99	50.549	Gadus_morhua
WBGene00016740	C48B6.2	99	43.478	ENSGALG00000040238	IMP3	99	45.652	Gallus_gallus
WBGene00016740	C48B6.2	99	53.297	ENSGAFG00000007425	imp3	99	53.297	Gambusia_affinis
WBGene00016740	C48B6.2	99	52.198	ENSGACG00000015998	imp3	99	52.198	Gasterosteus_aculeatus
WBGene00016740	C48B6.2	99	46.196	ENSGAGG00000008163	IMP3	99	46.196	Gopherus_agassizii
WBGene00016740	C48B6.2	99	51.099	ENSGGOG00000025122	IMP3	99	51.099	Gorilla_gorilla
WBGene00016740	C48B6.2	99	53.297	ENSHBUG00000018453	imp3	99	53.297	Haplochromis_burtoni
WBGene00016740	C48B6.2	99	52.198	ENSHGLG00000019824	IMP3	99	52.198	Heterocephalus_glaber_female
WBGene00016740	C48B6.2	99	52.198	ENSHGLG00100020660	IMP3	99	52.198	Heterocephalus_glaber_male
WBGene00016740	C48B6.2	99	51.648	ENSHCOG00000020565	imp3	99	51.648	Hippocampus_comes
WBGene00016740	C48B6.2	99	50.549	ENSIPUG00000013142	imp3	99	50.549	Ictalurus_punctatus
WBGene00016740	C48B6.2	99	51.648	ENSSTOG00000030143	IMP3	99	51.648	Ictidomys_tridecemlineatus
WBGene00016740	C48B6.2	99	52.747	ENSKMAG00000001956	imp3	99	52.747	Kryptolebias_marmoratus
WBGene00016740	C48B6.2	99	52.747	ENSLBEG00000008178	imp3	99	52.747	Labrus_bergylta
WBGene00016740	C48B6.2	99	53.591	ENSLACG00000022148	imp3	99	53.591	Latimeria_chalumnae
WBGene00016740	C48B6.2	99	51.099	ENSLOCG00000010237	imp3	99	51.099	Lepisosteus_oculatus
WBGene00016740	C48B6.2	99	51.099	ENSLAFG00000004425	IMP3	99	51.099	Loxodonta_africana
WBGene00016740	C48B6.2	99	51.099	ENSMFAG00000008867	IMP3	99	51.099	Macaca_fascicularis
WBGene00016740	C48B6.2	99	51.099	ENSMMUG00000016103	IMP3	99	51.099	Macaca_mulatta
WBGene00016740	C48B6.2	99	51.099	ENSMNEG00000026328	IMP3	99	51.099	Macaca_nemestrina
WBGene00016740	C48B6.2	99	52.747	ENSMAMG00000003215	imp3	99	52.747	Mastacembelus_armatus
WBGene00016740	C48B6.2	99	53.297	ENSMZEG00005005544	imp3	99	53.297	Maylandia_zebra
WBGene00016740	C48B6.2	99	51.099	ENSMAUG00000010279	Imp3	99	51.099	Mesocricetus_auratus
WBGene00016740	C48B6.2	99	51.648	ENSMICG00000044149	IMP3	99	51.648	Microcebus_murinus
WBGene00016740	C48B6.2	99	51.648	ENSMOCG00000008647	Imp3	99	51.648	Microtus_ochrogaster
WBGene00016740	C48B6.2	95	51.445	ENSMMOG00000018117	imp3	83	51.445	Mola_mola
WBGene00016740	C48B6.2	99	50.549	ENSMODG00000025193	IMP3	99	50.549	Monodelphis_domestica
WBGene00016740	C48B6.2	99	53.846	ENSMALG00000006505	imp3	99	53.846	Monopterus_albus
WBGene00016740	C48B6.2	99	50.549	MGP_CAROLIEiJ_G0032258	Imp3	99	50.549	Mus_caroli
WBGene00016740	C48B6.2	99	50.549	ENSMUSG00000032288	Imp3	99	50.549	Mus_musculus
WBGene00016740	C48B6.2	99	50.549	MGP_PahariEiJ_G0015125	Imp3	99	50.549	Mus_pahari
WBGene00016740	C48B6.2	99	50.549	MGP_SPRETEiJ_G0033398	Imp3	99	50.549	Mus_spretus
WBGene00016740	C48B6.2	99	51.099	ENSMPUG00000020147	IMP3	99	51.099	Mustela_putorius_furo
WBGene00016740	C48B6.2	99	51.648	ENSMLUG00000014032	IMP3	99	51.648	Myotis_lucifugus
WBGene00016740	C48B6.2	99	52.747	ENSNGAG00000017248	Imp3	99	52.747	Nannospalax_galili
WBGene00016740	C48B6.2	99	53.297	ENSNBRG00000004060	imp3	99	53.297	Neolamprologus_brichardi
WBGene00016740	C48B6.2	99	52.198	ENSOPRG00000015906	-	99	52.198	Ochotona_princeps
WBGene00016740	C48B6.2	99	51.648	ENSODEG00000020194	IMP3	99	51.648	Octodon_degus
WBGene00016740	C48B6.2	99	52.747	ENSONIG00000010661	imp3	99	52.747	Oreochromis_niloticus
WBGene00016740	C48B6.2	99	51.648	ENSOCUG00000004690	IMP3	99	51.648	Oryctolagus_cuniculus
WBGene00016740	C48B6.2	99	50.829	ENSORLG00000004484	imp3	99	50.829	Oryzias_latipes
WBGene00016740	C48B6.2	99	50.829	ENSORLG00020003771	imp3	99	50.829	Oryzias_latipes_hni
WBGene00016740	C48B6.2	99	50.276	ENSORLG00015006933	imp3	99	50.276	Oryzias_latipes_hsok
WBGene00016740	C48B6.2	99	51.381	ENSOMEG00000016160	imp3	99	51.381	Oryzias_melastigma
WBGene00016740	C48B6.2	99	51.648	ENSOGAG00000004917	IMP3	99	51.648	Otolemur_garnettii
WBGene00016740	C48B6.2	99	51.099	ENSPPAG00000009241	IMP3	99	51.099	Pan_paniscus
WBGene00016740	C48B6.2	99	51.648	ENSPPRG00000018701	IMP3	99	51.648	Panthera_pardus
WBGene00016740	C48B6.2	99	51.099	ENSPTRG00000052235	IMP3	99	51.099	Pan_troglodytes
WBGene00016740	C48B6.2	99	51.099	ENSPANG00000013668	IMP3	99	51.099	Papio_anubis
WBGene00016740	C48B6.2	99	52.747	ENSPKIG00000007169	imp3	99	52.747	Paramormyrops_kingsleyae
WBGene00016740	C48B6.2	99	46.486	ENSPMGG00000009379	imp3	99	46.486	Periophthalmus_magnuspinnatus
WBGene00016740	C48B6.2	99	50.549	ENSPEMG00000013003	Imp3	99	50.549	Peromyscus_maniculatus_bairdii
WBGene00016740	C48B6.2	99	52.747	ENSPFOG00000016529	imp3	99	52.747	Poecilia_formosa
WBGene00016740	C48B6.2	99	52.747	ENSPLAG00000013831	imp3	99	52.747	Poecilia_latipinna
WBGene00016740	C48B6.2	99	52.747	ENSPMEG00000000797	imp3	99	52.747	Poecilia_mexicana
WBGene00016740	C48B6.2	99	52.747	ENSPREG00000006885	imp3	99	52.747	Poecilia_reticulata
WBGene00016740	C48B6.2	99	51.099	ENSPPYG00000006664	IMP3	99	51.099	Pongo_abelii
WBGene00016740	C48B6.2	99	51.099	ENSPCAG00000006920	IMP3	99	51.099	Procavia_capensis
WBGene00016740	C48B6.2	99	51.648	ENSPCOG00000012367	IMP3	99	51.648	Propithecus_coquereli
WBGene00016740	C48B6.2	99	51.648	ENSPVAG00000010036	IMP3	99	51.648	Pteropus_vampyrus
WBGene00016740	C48B6.2	99	53.297	ENSPNYG00000000324	imp3	99	53.297	Pundamilia_nyererei
WBGene00016740	C48B6.2	99	53.297	ENSPNAG00000017113	imp3	99	53.297	Pygocentrus_nattereri
WBGene00016740	C48B6.2	99	50.549	ENSRNOG00000017460	Imp3	99	50.549	Rattus_norvegicus
WBGene00016740	C48B6.2	99	50.549	ENSRBIG00000024522	IMP3	99	50.549	Rhinopithecus_bieti
WBGene00016740	C48B6.2	99	50.549	ENSRROG00000024157	IMP3	99	50.549	Rhinopithecus_roxellana
WBGene00016740	C48B6.2	99	44.505	YHR148W	-	99	44.505	Saccharomyces_cerevisiae
WBGene00016740	C48B6.2	99	45.604	ENSSBOG00000026404	-	99	45.604	Saimiri_boliviensis_boliviensis
WBGene00016740	C48B6.2	99	51.099	ENSSBOG00000006542	-	99	51.099	Saimiri_boliviensis_boliviensis
WBGene00016740	C48B6.2	100	50.000	ENSSHAG00000006200	IMP3	100	50.000	Sarcophilus_harrisii
WBGene00016740	C48B6.2	99	52.198	ENSSFOG00015012483	imp3	99	52.198	Scleropages_formosus
WBGene00016740	C48B6.2	99	53.297	ENSSMAG00000007865	imp3	99	53.297	Scophthalmus_maximus
WBGene00016740	C48B6.2	99	53.297	ENSSDUG00000010594	imp3	99	53.297	Seriola_dumerili
WBGene00016740	C48B6.2	99	52.747	ENSSLDG00000015587	imp3	99	52.747	Seriola_lalandi_dorsalis
WBGene00016740	C48B6.2	99	52.198	ENSSARG00000009657	IMP3	99	52.198	Sorex_araneus
WBGene00016740	C48B6.2	99	51.099	ENSSPAG00000002088	imp3	99	51.099	Stegastes_partitus
WBGene00016740	C48B6.2	99	40.217	ENSTGUG00000013228	IMP3	99	42.391	Taeniopygia_guttata
WBGene00016740	C48B6.2	100	50.820	ENSTRUG00000025783	imp3	100	50.820	Takifugu_rubripes
WBGene00016740	C48B6.2	99	51.099	ENSUAMG00000022724	IMP3	99	51.099	Ursus_americanus
WBGene00016740	C48B6.2	99	51.099	ENSUMAG00000003736	IMP3	99	51.099	Ursus_maritimus
WBGene00016740	C48B6.2	99	49.451	ENSVVUG00000019589	IMP3	99	49.451	Vulpes_vulpes
WBGene00016740	C48B6.2	95	51.149	ENSXCOG00000007392	imp3	95	51.149	Xiphophorus_couchianus
WBGene00016740	C48B6.2	99	52.198	ENSXMAG00000023049	imp3	99	52.198	Xiphophorus_maculatus