EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00016808 (Gene tree)
Gene ID: -
Gene Symbol: C50D2.5
Alias: -
Full Name: Splicing factor 3B subunit 6-like protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 558 bases
Position: chrII:98404-98961
Accession: Q8ITY4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C50D2	RRM_1	PF00076.22	2.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C50D2.5	-	492	NM_061258	C50D2.5	138 (aa)	NP_493659	Q8ITY4

Gene Model

Click here to download WBGene00016808's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00016808's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00016808	C50D2.5	51	36.486	WBGene00011059	R06C1.4	88	36.486

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00016808	C50D2.5	91	68.000	ENSG00000115128	SF3B6	100	68.000	Homo_sapiens
WBGene00016808	C50D2.5	91	66.400	ENSAPOG00000023788	sf3b6	100	66.400	Acanthochromis_polyacanthus
WBGene00016808	C50D2.5	91	68.000	ENSAMEG00000002786	SF3B6	100	68.000	Ailuropoda_melanoleuca
WBGene00016808	C50D2.5	91	66.400	ENSACIG00000012608	sf3b6	100	66.400	Amphilophus_citrinellus
WBGene00016808	C50D2.5	91	66.400	ENSAOCG00000013394	sf3b6	100	66.400	Amphiprion_ocellaris
WBGene00016808	C50D2.5	91	66.400	ENSAPEG00000015311	sf3b6	100	66.400	Amphiprion_percula
WBGene00016808	C50D2.5	91	66.400	ENSATEG00000016569	sf3b6	100	66.400	Anabas_testudineus
WBGene00016808	C50D2.5	91	68.000	ENSACAG00000011677	SF3B6	100	68.000	Anolis_carolinensis
WBGene00016808	C50D2.5	93	66.667	ENSANAG00000027284	SF3B6	98	66.667	Aotus_nancymaae
WBGene00016808	C50D2.5	91	66.400	ENSACLG00000007793	sf3b6	100	66.400	Astatotilapia_calliptera
WBGene00016808	C50D2.5	91	68.000	ENSAMXG00000034888	sf3b6	100	68.000	Astyanax_mexicanus
WBGene00016808	C50D2.5	91	68.000	ENSBTAG00000003407	SF3B6	100	68.000	Bos_taurus
WBGene00016808	C50D2.5	91	66.400	ENSBTAG00000049128	-	100	66.400	Bos_taurus
WBGene00016808	C50D2.5	91	68.000	ENSCJAG00000007716	SF3B6	100	68.000	Callithrix_jacchus
WBGene00016808	C50D2.5	91	68.000	ENSCAFG00000003957	SF3B6	100	68.000	Canis_familiaris
WBGene00016808	C50D2.5	91	68.000	ENSCAFG00020025576	SF3B6	100	68.000	Canis_lupus_dingo
WBGene00016808	C50D2.5	91	68.000	ENSCHIG00000009902	SF3B6	100	68.000	Capra_hircus
WBGene00016808	C50D2.5	91	68.000	ENSTSYG00000013978	SF3B6	100	68.000	Carlito_syrichta
WBGene00016808	C50D2.5	83	71.930	ENSCAPG00000016302	SF3B6	93	71.930	Cavia_aperea
WBGene00016808	C50D2.5	91	68.000	ENSCPOG00000008016	SF3B6	100	68.000	Cavia_porcellus
WBGene00016808	C50D2.5	91	68.000	ENSCCAG00000036653	SF3B6	100	68.000	Cebus_capucinus
WBGene00016808	C50D2.5	84	68.103	ENSCCAG00000018894	-	91	68.103	Cebus_capucinus
WBGene00016808	C50D2.5	91	68.000	ENSCATG00000030936	SF3B6	100	68.000	Cercocebus_atys
WBGene00016808	C50D2.5	91	68.000	ENSCLAG00000014512	SF3B6	100	68.000	Chinchilla_lanigera
WBGene00016808	C50D2.5	91	68.000	ENSCSAG00000008390	SF3B6	100	68.000	Chlorocebus_sabaeus
WBGene00016808	C50D2.5	91	68.000	ENSCHOG00000000689	SF3B6	100	68.000	Choloepus_hoffmanni
WBGene00016808	C50D2.5	62	72.941	ENSCHOG00000013886	-	72	72.941	Choloepus_hoffmanni
WBGene00016808	C50D2.5	91	68.000	ENSCPBG00000020042	SF3B6	100	68.000	Chrysemys_picta_bellii
WBGene00016808	C50D2.5	88	60.656	ENSCING00000012689	-	96	60.656	Ciona_intestinalis
WBGene00016808	C50D2.5	91	68.000	ENSCANG00000030559	SF3B6	100	68.000	Colobus_angolensis_palliatus
WBGene00016808	C50D2.5	91	68.000	ENSCGRG00001014595	Sf3b6	100	68.000	Cricetulus_griseus_chok1gshd
WBGene00016808	C50D2.5	91	68.000	ENSCGRG00000005272	Sf3b6	100	68.000	Cricetulus_griseus_crigri
WBGene00016808	C50D2.5	91	65.600	ENSCSEG00000019017	sf3b6	100	65.600	Cynoglossus_semilaevis
WBGene00016808	C50D2.5	91	67.200	ENSCVAG00000005055	sf3b6	100	67.200	Cyprinodon_variegatus
WBGene00016808	C50D2.5	91	68.000	ENSDARG00000009753	sf3b6	100	68.000	Danio_rerio
WBGene00016808	C50D2.5	91	68.000	ENSDNOG00000007148	SF3B6	100	68.000	Dasypus_novemcinctus
WBGene00016808	C50D2.5	83	60.345	ENSDORG00000027390	-	90	60.345	Dipodomys_ordii
WBGene00016808	C50D2.5	83	60.345	ENSDORG00000029761	-	90	60.345	Dipodomys_ordii
WBGene00016808	C50D2.5	91	68.000	ENSDORG00000009772	Sf3b6	100	68.000	Dipodomys_ordii
WBGene00016808	C50D2.5	83	70.435	FBgn0035692	Sf3b6	94	70.435	Drosophila_melanogaster
WBGene00016808	C50D2.5	83	69.565	ENSEBUG00000004424	sf3b6	91	69.565	Eptatretus_burgeri
WBGene00016808	C50D2.5	91	68.000	ENSEASG00005009993	SF3B6	100	68.000	Equus_asinus_asinus
WBGene00016808	C50D2.5	91	60.000	ENSEASG00005008061	-	100	60.000	Equus_asinus_asinus
WBGene00016808	C50D2.5	70	66.667	ENSECAG00000027755	-	82	66.667	Equus_caballus
WBGene00016808	C50D2.5	73	72.277	ENSECAG00000015618	SF3B6	93	72.277	Equus_caballus
WBGene00016808	C50D2.5	91	66.400	ENSELUG00000010379	sf3b6	100	66.400	Esox_lucius
WBGene00016808	C50D2.5	91	68.000	ENSFCAG00000031365	SF3B6	100	68.000	Felis_catus
WBGene00016808	C50D2.5	91	68.000	ENSFALG00000001651	SF3B6	100	68.000	Ficedula_albicollis
WBGene00016808	C50D2.5	91	68.000	ENSFDAG00000007864	SF3B6	100	68.000	Fukomys_damarensis
WBGene00016808	C50D2.5	91	67.200	ENSFHEG00000000685	sf3b6	100	67.200	Fundulus_heteroclitus
WBGene00016808	C50D2.5	91	65.600	ENSGMOG00000005123	sf3b6	100	65.600	Gadus_morhua
WBGene00016808	C50D2.5	66	68.132	ENSGALG00000016501	SF3B6	100	68.132	Gallus_gallus
WBGene00016808	C50D2.5	91	66.400	ENSGAFG00000009334	sf3b6	100	66.400	Gambusia_affinis
WBGene00016808	C50D2.5	91	65.600	ENSGACG00000004803	sf3b6	100	65.600	Gasterosteus_aculeatus
WBGene00016808	C50D2.5	91	68.000	ENSGAGG00000012240	SF3B6	100	68.000	Gopherus_agassizii
WBGene00016808	C50D2.5	91	68.000	ENSGGOG00000040806	SF3B6	100	68.000	Gorilla_gorilla
WBGene00016808	C50D2.5	91	66.400	ENSHBUG00000012556	sf3b6	100	66.400	Haplochromis_burtoni
WBGene00016808	C50D2.5	91	68.000	ENSHGLG00000014895	SF3B14	100	68.000	Heterocephalus_glaber_female
WBGene00016808	C50D2.5	91	68.000	ENSHGLG00100008639	SF3B14	100	68.000	Heterocephalus_glaber_male
WBGene00016808	C50D2.5	91	67.200	ENSHCOG00000019962	sf3b6	100	67.200	Hippocampus_comes
WBGene00016808	C50D2.5	91	68.000	ENSIPUG00000023800	sf3b6	100	68.000	Ictalurus_punctatus
WBGene00016808	C50D2.5	91	68.000	ENSJJAG00000021819	Sf3b6	100	68.000	Jaculus_jaculus
WBGene00016808	C50D2.5	91	66.400	ENSKMAG00000004000	sf3b6	100	66.400	Kryptolebias_marmoratus
WBGene00016808	C50D2.5	91	66.400	ENSLBEG00000022937	sf3b6	100	66.400	Labrus_bergylta
WBGene00016808	C50D2.5	91	68.000	ENSLACG00000014326	SF3B6	100	68.000	Latimeria_chalumnae
WBGene00016808	C50D2.5	91	68.000	ENSLOCG00000016481	sf3b6	100	68.000	Lepisosteus_oculatus
WBGene00016808	C50D2.5	91	68.000	ENSLAFG00000029423	SF3B6	100	68.000	Loxodonta_africana
WBGene00016808	C50D2.5	91	68.000	ENSMFAG00000038178	SF3B6	100	68.000	Macaca_fascicularis
WBGene00016808	C50D2.5	91	68.000	ENSMMUG00000001282	SF3B6	100	68.000	Macaca_mulatta
WBGene00016808	C50D2.5	91	68.000	ENSMNEG00000029050	SF3B6	100	68.000	Macaca_nemestrina
WBGene00016808	C50D2.5	91	68.000	ENSMLEG00000019896	SF3B6	100	68.000	Mandrillus_leucophaeus
WBGene00016808	C50D2.5	71	71.429	ENSMAMG00000007713	sf3b6	89	71.429	Mastacembelus_armatus
WBGene00016808	C50D2.5	91	66.400	ENSMZEG00005003557	sf3b6	100	66.400	Maylandia_zebra
WBGene00016808	C50D2.5	91	68.000	ENSMGAG00000014057	SF3B6	100	68.000	Meleagris_gallopavo
WBGene00016808	C50D2.5	91	68.000	ENSMAUG00000000586	-	100	68.000	Mesocricetus_auratus
WBGene00016808	C50D2.5	91	68.000	ENSMICG00000032874	SF3B6	100	68.000	Microcebus_murinus
WBGene00016808	C50D2.5	91	68.000	ENSMOCG00000014338	Sf3b6	100	68.000	Microtus_ochrogaster
WBGene00016808	C50D2.5	91	67.200	ENSMMOG00000015653	sf3b6	100	67.200	Mola_mola
WBGene00016808	C50D2.5	91	63.200	ENSMODG00000002144	SF3B6	100	63.200	Monodelphis_domestica
WBGene00016808	C50D2.5	91	67.200	ENSMALG00000019642	sf3b6	67	67.200	Monopterus_albus
WBGene00016808	C50D2.5	91	68.000	MGP_CAROLIEiJ_G0017590	Sf3b6	100	68.000	Mus_caroli
WBGene00016808	C50D2.5	91	68.000	ENSMUSG00000037361	Sf3b6	97	72.072	Mus_musculus
WBGene00016808	C50D2.5	91	68.000	MGP_PahariEiJ_G0029348	Sf3b6	100	68.000	Mus_pahari
WBGene00016808	C50D2.5	91	68.000	MGP_SPRETEiJ_G0018434	Sf3b6	100	68.000	Mus_spretus
WBGene00016808	C50D2.5	91	68.000	ENSMPUG00000013957	SF3B6	100	68.000	Mustela_putorius_furo
WBGene00016808	C50D2.5	91	68.000	ENSMLUG00000002473	SF3B6	100	68.000	Myotis_lucifugus
WBGene00016808	C50D2.5	91	68.000	ENSNGAG00000020256	Sf3b6	100	68.000	Nannospalax_galili
WBGene00016808	C50D2.5	91	66.400	ENSNBRG00000018244	sf3b6	100	66.400	Neolamprologus_brichardi
WBGene00016808	C50D2.5	91	68.000	ENSNLEG00000000815	-	100	68.000	Nomascus_leucogenys
WBGene00016808	C50D2.5	87	67.500	ENSODEG00000009547	SF3B6	100	67.500	Octodon_degus
WBGene00016808	C50D2.5	91	66.400	ENSONIG00000001219	sf3b6	100	66.400	Oreochromis_niloticus
WBGene00016808	C50D2.5	91	68.000	ENSOANG00000007627	SF3B6	100	68.000	Ornithorhynchus_anatinus
WBGene00016808	C50D2.5	91	68.000	ENSOCUG00000022008	SF3B6	100	68.000	Oryctolagus_cuniculus
WBGene00016808	C50D2.5	91	66.400	ENSORLG00000015955	sf3b6	100	66.400	Oryzias_latipes
WBGene00016808	C50D2.5	91	66.400	ENSORLG00020005875	sf3b6	100	66.400	Oryzias_latipes_hni
WBGene00016808	C50D2.5	91	66.400	ENSORLG00015001347	sf3b6	100	66.400	Oryzias_latipes_hsok
WBGene00016808	C50D2.5	91	67.200	ENSOMEG00000014506	sf3b6	100	67.200	Oryzias_melastigma
WBGene00016808	C50D2.5	91	68.000	ENSOGAG00000004468	SF3B6	100	68.000	Otolemur_garnettii
WBGene00016808	C50D2.5	91	68.000	ENSOARG00000017819	SF3B6	100	68.000	Ovis_aries
WBGene00016808	C50D2.5	91	68.000	ENSPPAG00000027816	SF3B6	100	68.000	Pan_paniscus
WBGene00016808	C50D2.5	91	68.000	ENSPPRG00000023257	SF3B6	100	68.000	Panthera_pardus
WBGene00016808	C50D2.5	91	68.000	ENSPTIG00000013322	SF3B6	100	68.000	Panthera_tigris_altaica
WBGene00016808	C50D2.5	91	68.000	ENSPTRG00000011709	SF3B6	100	68.000	Pan_troglodytes
WBGene00016808	C50D2.5	91	68.000	ENSPANG00000021963	SF3B6	100	68.000	Papio_anubis
WBGene00016808	C50D2.5	91	68.000	ENSPKIG00000012311	sf3b6	100	68.000	Paramormyrops_kingsleyae
WBGene00016808	C50D2.5	83	71.930	ENSPSIG00000017115	SF3B6	99	71.930	Pelodiscus_sinensis
WBGene00016808	C50D2.5	70	72.165	ENSPMGG00000014621	sf3b6	81	72.165	Periophthalmus_magnuspinnatus
WBGene00016808	C50D2.5	91	68.000	ENSPEMG00000010308	Sf3b6	100	68.000	Peromyscus_maniculatus_bairdii
WBGene00016808	C50D2.5	81	67.857	ENSPMAG00000006008	sf3b6	90	67.857	Petromyzon_marinus
WBGene00016808	C50D2.5	88	54.918	ENSPCIG00000015858	-	98	54.918	Phascolarctos_cinereus
WBGene00016808	C50D2.5	91	68.000	ENSPCIG00000022128	-	100	68.000	Phascolarctos_cinereus
WBGene00016808	C50D2.5	91	66.400	ENSPFOG00000012494	sf3b6	100	66.400	Poecilia_formosa
WBGene00016808	C50D2.5	91	66.400	ENSPLAG00000020460	sf3b6	100	66.400	Poecilia_latipinna
WBGene00016808	C50D2.5	91	66.400	ENSPMEG00000004426	sf3b6	100	66.400	Poecilia_mexicana
WBGene00016808	C50D2.5	91	68.000	ENSPPYG00000012603	SF3B6	100	68.000	Pongo_abelii
WBGene00016808	C50D2.5	91	68.000	ENSPVAG00000011346	SF3B6	100	68.000	Pteropus_vampyrus
WBGene00016808	C50D2.5	91	66.400	ENSPNYG00000021832	sf3b6	100	66.400	Pundamilia_nyererei
WBGene00016808	C50D2.5	91	68.000	ENSPNAG00000008845	sf3b6	100	68.000	Pygocentrus_nattereri
WBGene00016808	C50D2.5	91	58.400	ENSRNOG00000046172	Sf3b6	100	58.400	Rattus_norvegicus
WBGene00016808	C50D2.5	91	68.000	ENSRBIG00000039598	SF3B6	100	68.000	Rhinopithecus_bieti
WBGene00016808	C50D2.5	91	68.000	ENSRROG00000011368	SF3B6	100	68.000	Rhinopithecus_roxellana
WBGene00016808	C50D2.5	91	68.000	ENSSBOG00000002914	SF3B6	100	68.000	Saimiri_boliviensis_boliviensis
WBGene00016808	C50D2.5	91	68.000	ENSSFOG00015014370	sf3b6	100	68.000	Scleropages_formosus
WBGene00016808	C50D2.5	91	66.400	ENSSMAG00000004566	sf3b6	100	66.400	Scophthalmus_maximus
WBGene00016808	C50D2.5	91	66.400	ENSSDUG00000006538	sf3b6	100	66.400	Seriola_dumerili
WBGene00016808	C50D2.5	91	66.400	ENSSLDG00000004494	sf3b6	100	66.400	Seriola_lalandi_dorsalis
WBGene00016808	C50D2.5	91	68.000	ENSSARG00000011902	-	100	68.000	Sorex_araneus
WBGene00016808	C50D2.5	91	68.000	ENSSPUG00000014919	SF3B6	100	68.000	Sphenodon_punctatus
WBGene00016808	C50D2.5	91	66.400	ENSSPAG00000013201	sf3b6	100	66.400	Stegastes_partitus
WBGene00016808	C50D2.5	91	68.000	ENSSSCG00000008587	SF3B6	100	68.000	Sus_scrofa
WBGene00016808	C50D2.5	91	68.000	ENSTGUG00000013191	SF3B6	100	68.000	Taeniopygia_guttata
WBGene00016808	C50D2.5	91	66.400	ENSTRUG00000025286	sf3b6	100	66.400	Takifugu_rubripes
WBGene00016808	C50D2.5	91	66.400	ENSTNIG00000009719	sf3b6	100	66.400	Tetraodon_nigroviridis
WBGene00016808	C50D2.5	83	71.930	ENSTBEG00000012532	SF3B6	99	71.930	Tupaia_belangeri
WBGene00016808	C50D2.5	83	71.930	ENSTTRG00000013430	SF3B6	99	71.930	Tursiops_truncatus
WBGene00016808	C50D2.5	91	68.000	ENSUAMG00000025329	SF3B6	100	68.000	Ursus_americanus
WBGene00016808	C50D2.5	91	53.968	ENSUAMG00000000978	-	100	53.968	Ursus_americanus
WBGene00016808	C50D2.5	91	68.000	ENSUMAG00000022835	SF3B6	100	68.000	Ursus_maritimus
WBGene00016808	C50D2.5	83	71.930	ENSVPAG00000005546	SF3B6	99	71.930	Vicugna_pacos
WBGene00016808	C50D2.5	91	68.000	ENSVVUG00000010874	SF3B6	100	68.000	Vulpes_vulpes
WBGene00016808	C50D2.5	91	68.000	ENSXETG00000018204	sf3b6	100	68.000	Xenopus_tropicalis
WBGene00016808	C50D2.5	70	72.917	ENSXCOG00000008477	sf3b6	74	72.917	Xiphophorus_couchianus
WBGene00016808	C50D2.5	91	66.400	ENSXMAG00000010747	sf3b6	100	66.400	Xiphophorus_maculatus