EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00016907 (Gene tree)
Gene ID: -
Gene Symbol: C53H9.2
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 1868 bases
Position: chrI:1832897-1834764
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C53H9	MMR_HSR1	PF01926.23	7.6e-17	1	1
C53H9	MMR_HSR1	PF01926.23	1.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C53H9.2b	-	1640	NR_131349	-	- (aa)	-	-
C53H9.2c	-	1515	NR_131350	-	- (aa)	-	-
C53H9.2a	-	1683	NM_170804	C53H9.2a	554 (aa)	NP_740787	O01826
C53H9.2d	-	1547	NM_001306498	C53H9.2d	416 (aa)	NP_001293427	W6RY49
C53H9.2e	-	1707	NR_131348	-	- (aa)	-	-

Gene Model

Click here to download WBGene00016907's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00016907's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00016907	C53H9.2	94	58.871	ENSG00000041802	LSG1	98	39.011	Homo_sapiens
WBGene00016907	C53H9.2	82	52.482	ENSAPOG00000009694	lsg1	76	42.947	Acanthochromis_polyacanthus
WBGene00016907	C53H9.2	88	51.500	ENSAMEG00000009343	LSG1	61	51.500	Ailuropoda_melanoleuca
WBGene00016907	C53H9.2	79	51.852	ENSACIG00000012406	lsg1	84	33.583	Amphilophus_citrinellus
WBGene00016907	C53H9.2	81	55.645	ENSAOCG00000016066	lsg1	76	40.252	Amphiprion_ocellaris
WBGene00016907	C53H9.2	82	43.814	ENSAPEG00000003252	lsg1	76	44.156	Amphiprion_percula
WBGene00016907	C53H9.2	77	54.762	ENSATEG00000011794	lsg1	80	46.288	Anabas_testudineus
WBGene00016907	C53H9.2	87	51.282	ENSACAG00000004222	LSG1	74	51.282	Anolis_carolinensis
WBGene00016907	C53H9.2	89	58.537	ENSANAG00000021153	LSG1	66	52.041	Aotus_nancymaae
WBGene00016907	C53H9.2	91	51.852	ENSACLG00000000520	lsg1	76	44.898	Astatotilapia_calliptera
WBGene00016907	C53H9.2	84	50.785	ENSAMXG00000008271	lsg1	69	50.510	Astyanax_mexicanus
WBGene00016907	C53H9.2	95	53.103	ENSBTAG00000008461	LSG1	76	48.585	Bos_taurus
WBGene00016907	C53H9.2	89	58.537	ENSCJAG00000013962	LSG1	66	52.041	Callithrix_jacchus
WBGene00016907	C53H9.2	81	58.462	ENSCAFG00000013445	LSG1	65	52.792	Canis_familiaris
WBGene00016907	C53H9.2	90	49.065	ENSCAFG00020002216	LSG1	66	51.000	Canis_lupus_dingo
WBGene00016907	C53H9.2	95	52.414	ENSCHIG00000015769	LSG1	75	51.020	Capra_hircus
WBGene00016907	C53H9.2	94	52.414	ENSTSYG00000001447	LSG1	69	48.113	Carlito_syrichta
WBGene00016907	C53H9.2	78	53.383	ENSCAPG00000009856	LSG1	67	50.259	Cavia_aperea
WBGene00016907	C53H9.2	89	56.911	ENSCCAG00000035744	LSG1	66	50.510	Cebus_capucinus
WBGene00016907	C53H9.2	94	58.065	ENSCATG00000042060	LSG1	68	50.785	Cercocebus_atys
WBGene00016907	C53H9.2	95	58.065	ENSCSAG00000008796	LSG1	61	51.020	Chlorocebus_sabaeus
WBGene00016907	C53H9.2	81	51.777	ENSCPBG00000015941	LSG1	56	51.777	Chrysemys_picta_bellii
WBGene00016907	C53H9.2	94	47.859	ENSCING00000007079	-	99	46.497	Ciona_intestinalis
WBGene00016907	C53H9.2	91	47.804	ENSCSAVG00000002514	-	98	45.399	Ciona_savignyi
WBGene00016907	C53H9.2	82	58.065	ENSCANG00000030709	LSG1	67	51.531	Colobus_angolensis_palliatus
WBGene00016907	C53H9.2	90	51.724	ENSCGRG00001019846	Lsg1	64	51.724	Cricetulus_griseus_chok1gshd
WBGene00016907	C53H9.2	90	51.724	ENSCGRG00000014617	Lsg1	64	51.724	Cricetulus_griseus_crigri
WBGene00016907	C53H9.2	88	50.769	ENSCSEG00000008522	lsg1	73	48.430	Cynoglossus_semilaevis
WBGene00016907	C53H9.2	88	50.935	ENSCVAG00000002484	lsg1	73	48.990	Cyprinodon_variegatus
WBGene00016907	C53H9.2	93	52.027	ENSDARG00000015352	lsg1	72	48.198	Danio_rerio
WBGene00016907	C53H9.2	90	45.494	ENSDNOG00000006224	LSG1	68	48.357	Dasypus_novemcinctus
WBGene00016907	C53H9.2	98	38.424	FBgn0266284	Ns3	93	40.035	Drosophila_melanogaster
WBGene00016907	C53H9.2	83	45.506	ENSEBUG00000003119	lsg1	57	47.170	Eptatretus_burgeri
WBGene00016907	C53H9.2	89	50.254	ENSEASG00005000678	LSG1	62	50.254	Equus_asinus_asinus
WBGene00016907	C53H9.2	89	49.746	ENSECAG00000017659	LSG1	62	49.746	Equus_caballus
WBGene00016907	C53H9.2	82	43.176	ENSELUG00000023973	lsg1	76	42.437	Esox_lucius
WBGene00016907	C53H9.2	93	53.846	ENSFCAG00000024957	LSG1	68	49.239	Felis_catus
WBGene00016907	C53H9.2	88	52.308	ENSFALG00000007210	LSG1	66	52.308	Ficedula_albicollis
WBGene00016907	C53H9.2	75	64.646	ENSFDAG00000017373	LSG1	65	49.296	Fukomys_damarensis
WBGene00016907	C53H9.2	79	52.518	ENSFHEG00000003680	lsg1	67	51.795	Fundulus_heteroclitus
WBGene00016907	C53H9.2	85	50.505	ENSGMOG00000015834	lsg1	74	43.651	Gadus_morhua
WBGene00016907	C53H9.2	91	52.555	ENSGALG00000007058	LSG1	69	48.341	Gallus_gallus
WBGene00016907	C53H9.2	81	54.839	ENSGAFG00000015831	lsg1	76	46.364	Gambusia_affinis
WBGene00016907	C53H9.2	76	53.659	ENSGACG00000009323	lsg1	69	46.939	Gasterosteus_aculeatus
WBGene00016907	C53H9.2	95	58.065	ENSGGOG00000000520	LSG1	71	52.041	Gorilla_gorilla
WBGene00016907	C53H9.2	94	51.852	ENSHBUG00000005659	lsg1	80	43.893	Haplochromis_burtoni
WBGene00016907	C53H9.2	80	50.495	ENSHGLG00000017390	LSG1	82	41.635	Heterocephalus_glaber_female
WBGene00016907	C53H9.2	80	50.495	ENSHGLG00100018587	LSG1	82	41.635	Heterocephalus_glaber_male
WBGene00016907	C53H9.2	89	49.744	ENSHCOG00000016848	lsg1	76	45.082	Hippocampus_comes
WBGene00016907	C53H9.2	98	32.013	ENSIPUG00000008631	lsg1	84	33.582	Ictalurus_punctatus
WBGene00016907	C53H9.2	68	50.467	ENSSTOG00000010234	LSG1	63	50.510	Ictidomys_tridecemlineatus
WBGene00016907	C53H9.2	88	52.261	ENSJJAG00000015513	Lsg1	61	52.261	Jaculus_jaculus
WBGene00016907	C53H9.2	79	44.386	ENSKMAG00000009681	lsg1	84	41.040	Kryptolebias_marmoratus
WBGene00016907	C53H9.2	82	45.195	ENSLBEG00000024261	lsg1	83	42.323	Labrus_bergylta
WBGene00016907	C53H9.2	94	50.704	ENSLACG00000013399	LSG1	68	46.047	Latimeria_chalumnae
WBGene00016907	C53H9.2	82	51.795	ENSLOCG00000004918	lsg1	73	45.267	Lepisosteus_oculatus
WBGene00016907	C53H9.2	78	57.692	ENSLAFG00000012919	-	62	51.269	Loxodonta_africana
WBGene00016907	C53H9.2	94	58.065	ENSMFAG00000039903	LSG1	70	48.341	Macaca_fascicularis
WBGene00016907	C53H9.2	94	58.065	ENSMMUG00000010708	LSG1	71	48.611	Macaca_mulatta
WBGene00016907	C53H9.2	94	58.065	ENSMNEG00000031538	LSG1	70	48.341	Macaca_nemestrina
WBGene00016907	C53H9.2	94	58.065	ENSMLEG00000041184	LSG1	71	48.611	Mandrillus_leucophaeus
WBGene00016907	C53H9.2	82	43.609	ENSMAMG00000000470	lsg1	77	42.526	Mastacembelus_armatus
WBGene00016907	C53H9.2	94	51.852	ENSMZEG00005017865	lsg1	80	43.893	Maylandia_zebra
WBGene00016907	C53H9.2	84	51.176	ENSMGAG00000007050	LSG1	77	51.176	Meleagris_gallopavo
WBGene00016907	C53H9.2	95	53.571	ENSMAUG00000016976	Lsg1	73	48.792	Mesocricetus_auratus
WBGene00016907	C53H9.2	90	56.452	ENSMICG00000049087	LSG1	67	49.490	Microcebus_murinus
WBGene00016907	C53H9.2	92	56.452	ENSMOCG00000022136	Lsg1	68	50.262	Microtus_ochrogaster
WBGene00016907	C53H9.2	89	41.558	ENSMMOG00000008884	lsg1	83	43.711	Mola_mola
WBGene00016907	C53H9.2	85	49.741	ENSMODG00000019828	LSG1	64	49.741	Monodelphis_domestica
WBGene00016907	C53H9.2	95	54.930	MGP_CAROLIEiJ_G0020648	Lsg1	72	49.761	Mus_caroli
WBGene00016907	C53H9.2	92	54.545	ENSMUSG00000022538	Lsg1	69	49.000	Mus_musculus
WBGene00016907	C53H9.2	80	54.815	MGP_PahariEiJ_G0016352	Lsg1	69	49.505	Mus_pahari
WBGene00016907	C53H9.2	93	54.815	MGP_SPRETEiJ_G0021544	Lsg1	69	49.505	Mus_spretus
WBGene00016907	C53H9.2	82	56.923	ENSMPUG00000003734	LSG1	67	50.000	Mustela_putorius_furo
WBGene00016907	C53H9.2	95	55.725	ENSMLUG00000012548	LSG1	70	50.000	Myotis_lucifugus
WBGene00016907	C53H9.2	89	52.284	ENSNGAG00000021872	Lsg1	63	52.284	Nannospalax_galili
WBGene00016907	C53H9.2	94	58.871	ENSNLEG00000008293	LSG1	69	52.041	Nomascus_leucogenys
WBGene00016907	C53H9.2	58	54.286	ENSMEUG00000009041	-	50	54.286	Notamacropus_eugenii
WBGene00016907	C53H9.2	94	51.449	ENSONIG00000002635	lsg1	75	45.852	Oreochromis_niloticus
WBGene00016907	C53H9.2	86	50.254	ENSOANG00000012742	LSG1	67	50.254	Ornithorhynchus_anatinus
WBGene00016907	C53H9.2	94	58.065	ENSOCUG00000004817	LSG1	70	51.832	Oryctolagus_cuniculus
WBGene00016907	C53H9.2	82	44.162	ENSORLG00000007695	lsg1	83	41.586	Oryzias_latipes
WBGene00016907	C53H9.2	81	50.769	ENSORLG00020016286	lsg1	83	33.769	Oryzias_latipes_hni
WBGene00016907	C53H9.2	82	44.330	ENSORLG00015012025	lsg1	83	41.602	Oryzias_latipes_hsok
WBGene00016907	C53H9.2	82	44.020	ENSOMEG00000022379	lsg1	84	40.891	Oryzias_melastigma
WBGene00016907	C53H9.2	86	51.724	ENSOGAG00000003475	LSG1	59	51.724	Otolemur_garnettii
WBGene00016907	C53H9.2	95	52.055	ENSOARG00000020403	LSG1	76	48.357	Ovis_aries
WBGene00016907	C53H9.2	95	58.871	ENSPPAG00000029271	LSG1	78	45.455	Pan_paniscus
WBGene00016907	C53H9.2	94	52.703	ENSPPRG00000010281	LSG1	68	48.837	Panthera_pardus
WBGene00016907	C53H9.2	94	52.482	ENSPTIG00000010789	LSG1	68	48.558	Panthera_tigris_altaica
WBGene00016907	C53H9.2	95	58.871	ENSPTRG00000015760	LSG1	78	45.455	Pan_troglodytes
WBGene00016907	C53H9.2	88	65.657	ENSPANG00000018249	LSG1	68	50.785	Papio_anubis
WBGene00016907	C53H9.2	82	50.000	ENSPKIG00000002895	lsg1	77	34.356	Paramormyrops_kingsleyae
WBGene00016907	C53H9.2	85	51.232	ENSPSIG00000009821	LSG1	68	51.232	Pelodiscus_sinensis
WBGene00016907	C53H9.2	89	49.231	ENSPMGG00000000931	lsg1	71	49.231	Periophthalmus_magnuspinnatus
WBGene00016907	C53H9.2	89	51.777	ENSPEMG00000012082	-	70	47.418	Peromyscus_maniculatus_bairdii
WBGene00016907	C53H9.2	88	56.557	ENSPMAG00000007451	lsg1	69	47.248	Petromyzon_marinus
WBGene00016907	C53H9.2	82	52.593	ENSPFOG00000021882	lsg1	75	46.818	Poecilia_formosa
WBGene00016907	C53H9.2	80	54.918	ENSPLAG00000019536	lsg1	75	46.364	Poecilia_latipinna
WBGene00016907	C53H9.2	82	52.593	ENSPMEG00000017281	lsg1	75	46.396	Poecilia_mexicana
WBGene00016907	C53H9.2	72	49.065	ENSPREG00000006048	lsg1	74	44.106	Poecilia_reticulata
WBGene00016907	C53H9.2	95	58.871	ENSPPYG00000014425	LSG1	80	51.832	Pongo_abelii
WBGene00016907	C53H9.2	57	67.816	ENSPCAG00000005511	LSG1	51	50.000	Procavia_capensis
WBGene00016907	C53H9.2	90	55.814	ENSPCOG00000012360	LSG1	66	50.000	Propithecus_coquereli
WBGene00016907	C53H9.2	91	51.852	ENSPNYG00000021994	lsg1	76	44.898	Pundamilia_nyererei
WBGene00016907	C53H9.2	78	51.020	ENSPNAG00000015533	lsg1	75	45.267	Pygocentrus_nattereri
WBGene00016907	C53H9.2	94	55.147	ENSRNOG00000001727	Lsg1	68	49.754	Rattus_norvegicus
WBGene00016907	C53H9.2	90	58.065	ENSRBIG00000029053	LSG1	67	51.020	Rhinopithecus_bieti
WBGene00016907	C53H9.2	90	58.065	ENSRROG00000037702	LSG1	67	51.020	Rhinopithecus_roxellana
WBGene00016907	C53H9.2	84	44.882	YGL099W	LSG1	76	42.245	Saccharomyces_cerevisiae
WBGene00016907	C53H9.2	95	58.537	ENSSBOG00000034938	LSG1	74	51.531	Saimiri_boliviensis_boliviensis
WBGene00016907	C53H9.2	70	58.772	ENSSHAG00000003487	LSG1	64	58.772	Sarcophilus_harrisii
WBGene00016907	C53H9.2	76	54.545	ENSSFOG00015008955	lsg1	73	50.256	Scleropages_formosus
WBGene00016907	C53H9.2	82	49.744	ENSSDUG00000004622	lsg1	77	45.882	Seriola_dumerili
WBGene00016907	C53H9.2	73	35.950	ENSSLDG00000010869	lsg1	84	35.955	Seriola_lalandi_dorsalis
WBGene00016907	C53H9.2	60	55.224	ENSSARG00000012981	LSG1	52	46.667	Sorex_araneus
WBGene00016907	C53H9.2	88	58.871	ENSSPUG00000016347	LSG1	71	53.591	Sphenodon_punctatus
WBGene00016907	C53H9.2	80	55.738	ENSSPAG00000005508	lsg1	76	43.777	Stegastes_partitus
WBGene00016907	C53H9.2	99	45.276	ENSSSCG00000011827	LSG1	73	45.276	Sus_scrofa
WBGene00016907	C53H9.2	83	50.292	ENSTGUG00000009068	LSG1	70	50.292	Taeniopygia_guttata
WBGene00016907	C53H9.2	72	61.165	ENSTRUG00000017380	lsg1	68	50.802	Takifugu_rubripes
WBGene00016907	C53H9.2	80	57.025	ENSTNIG00000015570	lsg1	77	47.137	Tetraodon_nigroviridis
WBGene00016907	C53H9.2	82	57.364	ENSTTRG00000000559	LSG1	65	50.811	Tursiops_truncatus
WBGene00016907	C53H9.2	95	55.224	ENSUAMG00000012454	LSG1	80	50.249	Ursus_americanus
WBGene00016907	C53H9.2	95	55.224	ENSUMAG00000000855	LSG1	75	50.249	Ursus_maritimus
WBGene00016907	C53H9.2	78	57.258	ENSVPAG00000012400	LSG1	63	51.020	Vicugna_pacos
WBGene00016907	C53H9.2	90	49.065	ENSVVUG00000008956	LSG1	64	51.777	Vulpes_vulpes
WBGene00016907	C53H9.2	89	52.821	ENSXETG00000003451	lsg1	73	52.821	Xenopus_tropicalis
WBGene00016907	C53H9.2	81	54.032	ENSXCOG00000003239	lsg1	84	33.147	Xiphophorus_couchianus
WBGene00016907	C53H9.2	80	55.738	ENSXMAG00000005536	lsg1	74	46.818	Xiphophorus_maculatus