EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00017313 (Gene tree)
Gene ID: -
Gene Symbol: cpsf-2
Alias: -
Full Name: Probable cleavage and polyadenylation specificity factor subunit 2
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 3682 bases
Position: chrV:7179172-7182853
Accession: O17403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F09G2	Beta-Casp	PF10996.8	8.3e-22	1	1
F09G2	Lactamase_B	PF00753.27	1.9e-08	1	1
F09G2	RMMBL	PF07521.12	3.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F09G2.4	-	2627	NM_072421	F09G2.4	843 (aa)	NP_504822	O17403

Gene Model

Click here to download WBGene00017313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00017313's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00017313	cpsf-2	100	41.032	ENSG00000165934	CPSF2	100	60.000	Homo_sapiens
WBGene00017313	cpsf-2	100	42.019	ENSAPOG00000001242	cpsf2	100	41.879	Acanthochromis_polyacanthus
WBGene00017313	cpsf-2	100	41.920	ENSACIG00000009331	cpsf2	100	42.037	Amphilophus_citrinellus
WBGene00017313	cpsf-2	100	41.784	ENSAOCG00000014095	cpsf2	100	41.647	Amphiprion_ocellaris
WBGene00017313	cpsf-2	100	41.784	ENSAPEG00000009158	cpsf2	100	41.647	Amphiprion_percula
WBGene00017313	cpsf-2	96	42.214	ENSATEG00000017644	cpsf2	99	37.821	Anabas_testudineus
WBGene00017313	cpsf-2	100	40.330	ENSAPLG00000006330	CPSF2	100	40.281	Anas_platyrhynchos
WBGene00017313	cpsf-2	100	41.322	ENSACAG00000009245	CPSF2	100	41.371	Anolis_carolinensis
WBGene00017313	cpsf-2	100	41.032	ENSANAG00000022915	CPSF2	100	41.569	Aotus_nancymaae
WBGene00017313	cpsf-2	100	41.822	ENSAMXG00000018696	cpsf2	100	41.871	Astyanax_mexicanus
WBGene00017313	cpsf-2	100	41.032	ENSBTAG00000010227	CPSF2	100	41.569	Bos_taurus
WBGene00017313	cpsf-2	100	41.032	ENSCJAG00000018069	CPSF2	100	41.569	Callithrix_jacchus
WBGene00017313	cpsf-2	100	40.936	ENSCAFG00000010909	CPSF2	100	41.569	Canis_familiaris
WBGene00017313	cpsf-2	100	40.936	ENSCAFG00020020670	CPSF2	100	41.569	Canis_lupus_dingo
WBGene00017313	cpsf-2	100	41.032	ENSCHIG00000023848	CPSF2	100	41.569	Capra_hircus
WBGene00017313	cpsf-2	100	40.828	ENSTSYG00000009036	CPSF2	100	41.253	Carlito_syrichta
WBGene00017313	cpsf-2	100	41.032	ENSCPOG00000010899	CPSF2	100	41.569	Cavia_porcellus
WBGene00017313	cpsf-2	100	41.032	ENSCCAG00000028088	CPSF2	100	41.569	Cebus_capucinus
WBGene00017313	cpsf-2	100	41.032	ENSCATG00000030132	CPSF2	100	41.569	Cercocebus_atys
WBGene00017313	cpsf-2	100	41.032	ENSCLAG00000012404	CPSF2	100	41.569	Chinchilla_lanigera
WBGene00017313	cpsf-2	100	41.032	ENSCSAG00000011300	CPSF2	100	41.569	Chlorocebus_sabaeus
WBGene00017313	cpsf-2	100	40.071	ENSCHOG00000012904	CPSF2	93	49.119	Choloepus_hoffmanni
WBGene00017313	cpsf-2	100	40.867	ENSCPBG00000008766	CPSF2	97	41.218	Chrysemys_picta_bellii
WBGene00017313	cpsf-2	100	39.931	ENSCING00000007881	-	100	39.397	Ciona_intestinalis
WBGene00017313	cpsf-2	94	40.150	ENSCANG00000041651	CPSF2	99	40.722	Colobus_angolensis_palliatus
WBGene00017313	cpsf-2	100	41.726	ENSCGRG00001006901	Cpsf2	100	41.920	Cricetulus_griseus_chok1gshd
WBGene00017313	cpsf-2	100	41.726	ENSCGRG00000012416	Cpsf2	100	41.920	Cricetulus_griseus_crigri
WBGene00017313	cpsf-2	100	41.901	ENSCSEG00000004116	cpsf2	100	42.173	Cynoglossus_semilaevis
WBGene00017313	cpsf-2	100	41.432	ENSCVAG00000000095	cpsf2	100	42.007	Cyprinodon_variegatus
WBGene00017313	cpsf-2	100	42.907	ENSDARG00000028971	cpsf2	100	42.690	Danio_rerio
WBGene00017313	cpsf-2	100	41.032	ENSDNOG00000042757	CPSF2	100	41.569	Dasypus_novemcinctus
WBGene00017313	cpsf-2	100	40.914	ENSDORG00000013709	Cpsf2	100	41.452	Dipodomys_ordii
WBGene00017313	cpsf-2	100	40.234	FBgn0027873	Cpsf100	100	40.257	Drosophila_melanogaster
WBGene00017313	cpsf-2	100	39.172	ENSETEG00000012123	CPSF2	93	47.945	Echinops_telfairi
WBGene00017313	cpsf-2	53	42.539	ENSEBUG00000012098	cpsf2	93	42.637	Eptatretus_burgeri
WBGene00017313	cpsf-2	83	56.338	ENSEASG00005021193	CPSF2	100	56.338	Equus_asinus_asinus
WBGene00017313	cpsf-2	100	41.149	ENSECAG00000023935	CPSF2	100	41.686	Equus_caballus
WBGene00017313	cpsf-2	100	42.136	ENSELUG00000008442	cpsf2	100	42.093	Esox_lucius
WBGene00017313	cpsf-2	100	41.032	ENSFCAG00000007886	CPSF2	100	41.569	Felis_catus
WBGene00017313	cpsf-2	100	40.426	ENSFALG00000002412	CPSF2	100	40.493	Ficedula_albicollis
WBGene00017313	cpsf-2	100	41.032	ENSFDAG00000006327	CPSF2	100	41.569	Fukomys_damarensis
WBGene00017313	cpsf-2	96	41.606	ENSFHEG00000015465	cpsf2	98	42.284	Fundulus_heteroclitus
WBGene00017313	cpsf-2	100	43.023	ENSGMOG00000008761	cpsf2	100	42.974	Gadus_morhua
WBGene00017313	cpsf-2	100	40.898	ENSGALG00000010783	CPSF2	100	41.197	Gallus_gallus
WBGene00017313	cpsf-2	100	41.844	ENSGAFG00000001407	cpsf2	100	41.852	Gambusia_affinis
WBGene00017313	cpsf-2	100	42.249	ENSGACG00000008418	cpsf2	100	42.019	Gasterosteus_aculeatus
WBGene00017313	cpsf-2	100	40.749	ENSGAGG00000008287	CPSF2	100	41.101	Gopherus_agassizii
WBGene00017313	cpsf-2	100	41.032	ENSGGOG00000011799	CPSF2	100	41.569	Gorilla_gorilla
WBGene00017313	cpsf-2	100	41.549	ENSHBUG00000023466	cpsf2	100	41.415	Haplochromis_burtoni
WBGene00017313	cpsf-2	100	40.845	ENSHGLG00000018311	CPSF2	100	41.569	Heterocephalus_glaber_female
WBGene00017313	cpsf-2	100	40.845	ENSHGLG00100016460	CPSF2	100	41.569	Heterocephalus_glaber_male
WBGene00017313	cpsf-2	100	41.735	ENSHCOG00000019527	cpsf2	98	41.831	Hippocampus_comes
WBGene00017313	cpsf-2	100	42.267	ENSIPUG00000020857	cpsf2	100	42.339	Ictalurus_punctatus
WBGene00017313	cpsf-2	100	41.032	ENSSTOG00000009528	CPSF2	100	41.569	Ictidomys_tridecemlineatus
WBGene00017313	cpsf-2	100	41.032	ENSJJAG00000017925	Cpsf2	100	41.452	Jaculus_jaculus
WBGene00017313	cpsf-2	100	41.726	ENSKMAG00000019429	cpsf2	100	41.367	Kryptolebias_marmoratus
WBGene00017313	cpsf-2	74	44.146	ENSLBEG00000011585	cpsf2	100	40.859	Labrus_bergylta
WBGene00017313	cpsf-2	79	45.455	ENSLACG00000019024	CPSF2	100	41.725	Latimeria_chalumnae
WBGene00017313	cpsf-2	100	42.857	ENSLOCG00000014102	cpsf2	100	43.110	Lepisosteus_oculatus
WBGene00017313	cpsf-2	100	40.819	ENSLAFG00000004891	CPSF2	100	41.355	Loxodonta_africana
WBGene00017313	cpsf-2	100	41.032	ENSMFAG00000041212	CPSF2	100	41.569	Macaca_fascicularis
WBGene00017313	cpsf-2	100	41.032	ENSMMUG00000000699	CPSF2	100	41.569	Macaca_mulatta
WBGene00017313	cpsf-2	100	41.032	ENSMNEG00000031584	CPSF2	100	41.569	Macaca_nemestrina
WBGene00017313	cpsf-2	100	41.032	ENSMLEG00000029394	CPSF2	100	41.569	Mandrillus_leucophaeus
WBGene00017313	cpsf-2	100	41.784	ENSMAMG00000004235	cpsf2	100	41.901	Mastacembelus_armatus
WBGene00017313	cpsf-2	100	41.784	ENSMZEG00005001769	cpsf2	100	41.647	Maylandia_zebra
WBGene00017313	cpsf-2	100	40.850	ENSMGAG00000013122	CPSF2	100	40.797	Meleagris_gallopavo
WBGene00017313	cpsf-2	100	41.608	ENSMAUG00000015160	Cpsf2	100	41.803	Mesocricetus_auratus
WBGene00017313	cpsf-2	100	41.032	ENSMICG00000016441	CPSF2	100	41.569	Microcebus_murinus
WBGene00017313	cpsf-2	100	41.501	ENSMOCG00000015372	Cpsf2	100	41.920	Microtus_ochrogaster
WBGene00017313	cpsf-2	100	39.859	ENSMMOG00000015590	cpsf2	100	39.742	Mola_mola
WBGene00017313	cpsf-2	100	40.797	ENSMODG00000002042	CPSF2	100	41.335	Monodelphis_domestica
WBGene00017313	cpsf-2	100	40.588	ENSMALG00000022275	cpsf2	100	40.349	Monopterus_albus
WBGene00017313	cpsf-2	100	41.440	ENSMUSG00000041781	Cpsf2	100	41.754	Mus_musculus
WBGene00017313	cpsf-2	100	41.017	MGP_PahariEiJ_G0029791	Cpsf2	100	41.335	Mus_pahari
WBGene00017313	cpsf-2	100	41.440	MGP_SPRETEiJ_G0018877	Cpsf2	100	41.754	Mus_spretus
WBGene00017313	cpsf-2	100	41.032	ENSMPUG00000007617	CPSF2	98	41.569	Mustela_putorius_furo
WBGene00017313	cpsf-2	100	41.803	ENSMLUG00000005570	CPSF2	100	41.871	Myotis_lucifugus
WBGene00017313	cpsf-2	100	40.898	ENSNGAG00000020312	Cpsf2	100	41.218	Nannospalax_galili
WBGene00017313	cpsf-2	100	41.784	ENSNBRG00000022402	cpsf2	100	41.647	Neolamprologus_brichardi
WBGene00017313	cpsf-2	100	40.732	ENSNLEG00000017132	CPSF2	100	41.274	Nomascus_leucogenys
WBGene00017313	cpsf-2	86	54.516	ENSMEUG00000008138	CPSF2	91	54.516	Notamacropus_eugenii
WBGene00017313	cpsf-2	82	43.421	ENSOPRG00000008484	-	90	44.268	Ochotona_princeps
WBGene00017313	cpsf-2	100	41.149	ENSODEG00000008682	CPSF2	100	41.686	Octodon_degus
WBGene00017313	cpsf-2	100	41.784	ENSONIG00000005901	cpsf2	100	41.647	Oreochromis_niloticus
WBGene00017313	cpsf-2	100	41.149	ENSOANG00000003822	CPSF2	100	41.686	Ornithorhynchus_anatinus
WBGene00017313	cpsf-2	100	40.936	ENSOCUG00000005713	CPSF2	100	41.452	Oryctolagus_cuniculus
WBGene00017313	cpsf-2	100	39.390	ENSORLG00000011628	cpsf2	100	39.742	Oryzias_latipes
WBGene00017313	cpsf-2	100	42.438	ENSORLG00020016980	cpsf2	100	42.790	Oryzias_latipes_hni
WBGene00017313	cpsf-2	100	42.438	ENSORLG00015011910	cpsf2	100	42.790	Oryzias_latipes_hsok
WBGene00017313	cpsf-2	100	41.803	ENSOMEG00000022876	cpsf2	100	42.272	Oryzias_melastigma
WBGene00017313	cpsf-2	100	38.830	ENSOARG00000012889	CPSF2	100	39.369	Ovis_aries
WBGene00017313	cpsf-2	100	41.032	ENSPPAG00000039666	CPSF2	100	41.569	Pan_paniscus
WBGene00017313	cpsf-2	99	40.962	ENSPPRG00000010869	CPSF2	100	41.501	Panthera_pardus
WBGene00017313	cpsf-2	100	41.032	ENSPTIG00000021202	CPSF2	100	41.569	Panthera_tigris_altaica
WBGene00017313	cpsf-2	100	41.032	ENSPTRG00000006651	CPSF2	100	41.569	Pan_troglodytes
WBGene00017313	cpsf-2	100	41.032	ENSPANG00000017417	CPSF2	100	41.569	Papio_anubis
WBGene00017313	cpsf-2	100	40.164	ENSPKIG00000021453	cpsf2	100	40.023	Paramormyrops_kingsleyae
WBGene00017313	cpsf-2	100	40.797	ENSPSIG00000006289	CPSF2	100	41.218	Pelodiscus_sinensis
WBGene00017313	cpsf-2	77	36.890	ENSPMGG00000002511	cpsf2	99	37.462	Periophthalmus_magnuspinnatus
WBGene00017313	cpsf-2	100	41.149	ENSPEMG00000007917	Cpsf2	100	41.569	Peromyscus_maniculatus_bairdii
WBGene00017313	cpsf-2	100	43.042	ENSPMAG00000006205	cpsf2	100	42.640	Petromyzon_marinus
WBGene00017313	cpsf-2	100	40.797	ENSPCIG00000011393	CPSF2	100	41.335	Phascolarctos_cinereus
WBGene00017313	cpsf-2	100	42.689	ENSPFOG00000018648	cpsf2	100	42.204	Poecilia_formosa
WBGene00017313	cpsf-2	100	42.689	ENSPLAG00000019199	cpsf2	99	42.204	Poecilia_latipinna
WBGene00017313	cpsf-2	96	42.157	ENSPMEG00000012100	cpsf2	100	41.133	Poecilia_mexicana
WBGene00017313	cpsf-2	100	42.367	ENSPREG00000008960	cpsf2	100	42.488	Poecilia_reticulata
WBGene00017313	cpsf-2	66	33.686	ENSPPYG00000029685	-	100	33.979	Pongo_abelii
WBGene00017313	cpsf-2	100	41.032	ENSPCAG00000012477	CPSF2	100	41.569	Procavia_capensis
WBGene00017313	cpsf-2	100	40.914	ENSPCOG00000026387	CPSF2	100	41.452	Propithecus_coquereli
WBGene00017313	cpsf-2	59	57.653	ENSPVAG00000004223	CPSF2	65	57.653	Pteropus_vampyrus
WBGene00017313	cpsf-2	100	41.501	ENSPNYG00000023356	cpsf2	100	41.367	Pundamilia_nyererei
WBGene00017313	cpsf-2	100	41.822	ENSPNAG00000001849	cpsf2	100	42.142	Pygocentrus_nattereri
WBGene00017313	cpsf-2	100	41.017	ENSRNOG00000005733	Cpsf2	100	41.335	Rattus_norvegicus
WBGene00017313	cpsf-2	100	41.032	ENSRBIG00000044792	CPSF2	100	41.569	Rhinopithecus_bieti
WBGene00017313	cpsf-2	100	41.032	ENSRROG00000034875	CPSF2	100	41.569	Rhinopithecus_roxellana
WBGene00017313	cpsf-2	100	41.032	ENSSBOG00000024571	CPSF2	100	41.569	Saimiri_boliviensis_boliviensis
WBGene00017313	cpsf-2	100	41.101	ENSSHAG00000010458	CPSF2	100	41.637	Sarcophilus_harrisii
WBGene00017313	cpsf-2	100	42.857	ENSSFOG00015002117	cpsf2	100	43.494	Scleropages_formosus
WBGene00017313	cpsf-2	79	44.313	ENSSMAG00000002001	cpsf2	100	41.315	Scophthalmus_maximus
WBGene00017313	cpsf-2	100	42.019	ENSSDUG00000004084	cpsf2	100	41.970	Seriola_dumerili
WBGene00017313	cpsf-2	100	42.019	ENSSLDG00000024330	cpsf2	100	42.136	Seriola_lalandi_dorsalis
WBGene00017313	cpsf-2	100	40.728	ENSSPUG00000013485	CPSF2	100	40.893	Sphenodon_punctatus
WBGene00017313	cpsf-2	100	41.618	ENSSPAG00000013284	cpsf2	100	41.483	Stegastes_partitus
WBGene00017313	cpsf-2	100	41.032	ENSSSCG00000002447	CPSF2	100	41.452	Sus_scrofa
WBGene00017313	cpsf-2	100	40.307	ENSTGUG00000012571	-	100	40.376	Taeniopygia_guttata
WBGene00017313	cpsf-2	100	41.735	ENSTRUG00000003742	cpsf2	100	41.183	Takifugu_rubripes
WBGene00017313	cpsf-2	100	41.901	ENSTNIG00000012228	cpsf2	100	41.706	Tetraodon_nigroviridis
WBGene00017313	cpsf-2	80	43.695	ENSTBEG00000004530	CPSF2	84	44.838	Tupaia_belangeri
WBGene00017313	cpsf-2	89	56.250	ENSTTRG00000008697	CPSF2	88	56.250	Tursiops_truncatus
WBGene00017313	cpsf-2	100	41.032	ENSUAMG00000028071	CPSF2	100	41.569	Ursus_americanus
WBGene00017313	cpsf-2	100	41.032	ENSUMAG00000005029	CPSF2	96	50.808	Ursus_maritimus
WBGene00017313	cpsf-2	99	41.080	ENSVPAG00000003503	CPSF2	100	41.618	Vicugna_pacos
WBGene00017313	cpsf-2	100	40.936	ENSVVUG00000024642	CPSF2	100	41.569	Vulpes_vulpes
WBGene00017313	cpsf-2	100	41.371	ENSXETG00000010289	cpsf2	100	41.970	Xenopus_tropicalis
WBGene00017313	cpsf-2	100	42.173	ENSXCOG00000001764	cpsf2	100	42.407	Xiphophorus_couchianus
WBGene00017313	cpsf-2	100	41.939	ENSXMAG00000017048	cpsf2	100	42.173	Xiphophorus_maculatus