EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00017546 (Gene tree)
Gene ID: -
Gene Symbol: rpa-1
Alias: -
Full Name: Probable replication factor A 73 kDa subunit
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 2529 bases
Position: chrII:7664582-7667110
Accession: Q19537
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F18A1	tRNA_anti-codon	PF01336.25	4e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F18A1.5	-	2155	NM_063205	F18A1.5	655 (aa)	NP_495606	Q19537

Gene Model

Click here to download WBGene00017546's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00017546's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00017546	rpa-1	73	30.864	ENSAPOG00000019409	RPA1	69	30.864	Acanthochromis_polyacanthus
WBGene00017546	rpa-1	65	32.719	ENSAPOG00000011658	rpa1	77	32.719	Acanthochromis_polyacanthus
WBGene00017546	rpa-1	61	32.692	ENSACIG00000007277	rpa1	71	32.692	Amphilophus_citrinellus
WBGene00017546	rpa-1	75	30.966	ENSAOCG00000023376	rpa1	86	30.966	Amphiprion_ocellaris
WBGene00017546	rpa-1	73	30.372	ENSAPEG00000019132	RPA1	72	30.372	Amphiprion_percula
WBGene00017546	rpa-1	75	30.966	ENSAPEG00000008634	rpa1	86	30.966	Amphiprion_percula
WBGene00017546	rpa-1	65	32.719	ENSATEG00000022024	rpa1	76	32.719	Anabas_testudineus
WBGene00017546	rpa-1	72	31.271	ENSAPLG00000012442	RPA1	75	30.820	Anas_platyrhynchos
WBGene00017546	rpa-1	67	31.749	ENSACAG00000014490	RPA1	79	32.025	Anolis_carolinensis
WBGene00017546	rpa-1	71	31.013	ENSANAG00000023456	RPA1	82	31.013	Aotus_nancymaae
WBGene00017546	rpa-1	65	33.410	ENSACLG00000006640	rpa1	77	33.410	Astatotilapia_calliptera
WBGene00017546	rpa-1	78	30.057	ENSAMXG00000008418	rpa1	90	30.057	Astyanax_mexicanus
WBGene00017546	rpa-1	71	31.368	ENSCAFG00000019249	RPA1	76	31.368	Canis_familiaris
WBGene00017546	rpa-1	71	31.368	ENSCAFG00020009847	RPA1	76	31.368	Canis_lupus_dingo
WBGene00017546	rpa-1	66	30.700	ENSCHOG00000009454	-	99	31.151	Choloepus_hoffmanni
WBGene00017546	rpa-1	71	30.802	ENSCANG00000030911	RPA1	82	30.802	Colobus_angolensis_palliatus
WBGene00017546	rpa-1	66	31.207	ENSCGRG00001008197	Rpa1	69	31.409	Cricetulus_griseus_chok1gshd
WBGene00017546	rpa-1	66	31.207	ENSCGRG00000000582	Rpa1	84	31.409	Cricetulus_griseus_crigri
WBGene00017546	rpa-1	65	31.797	ENSCSEG00000013066	rpa1	73	31.797	Cynoglossus_semilaevis
WBGene00017546	rpa-1	65	32.719	ENSCVAG00000019431	rpa1	77	32.719	Cyprinodon_variegatus
WBGene00017546	rpa-1	71	30.105	ENSDNOG00000017218	RPA1	76	30.526	Dasypus_novemcinctus
WBGene00017546	rpa-1	67	34.667	ENSETEG00000017608	RPA1	71	34.667	Echinops_telfairi
WBGene00017546	rpa-1	72	30.247	ENSEASG00005009372	RPA1	86	30.263	Equus_asinus_asinus
WBGene00017546	rpa-1	71	30.316	ENSECAG00000023886	RPA1	76	30.316	Equus_caballus
WBGene00017546	rpa-1	64	31.221	ENSEEUG00000002186	-	68	31.221	Erinaceus_europaeus
WBGene00017546	rpa-1	62	30.361	ENSELUG00000006136	RPA1	81	30.361	Esox_lucius
WBGene00017546	rpa-1	72	31.677	ENSELUG00000021071	rpa1	79	32.091	Esox_lucius
WBGene00017546	rpa-1	73	30.612	ENSFCAG00000006306	RPA1	78	30.612	Felis_catus
WBGene00017546	rpa-1	72	32.353	ENSGMOG00000010382	rpa1	84	31.953	Gadus_morhua
WBGene00017546	rpa-1	73	30.584	ENSGALG00000003072	RPA1	80	30.040	Gallus_gallus
WBGene00017546	rpa-1	73	30.228	ENSGAFG00000020953	RPA1	73	30.228	Gambusia_affinis
WBGene00017546	rpa-1	65	33.180	ENSGAFG00000012916	rpa1	73	33.180	Gambusia_affinis
WBGene00017546	rpa-1	71	30.591	ENSGGOG00000014186	RPA1	80	30.591	Gorilla_gorilla
WBGene00017546	rpa-1	65	33.410	ENSHBUG00000017773	rpa1	72	33.410	Haplochromis_burtoni
WBGene00017546	rpa-1	65	32.028	ENSHCOG00000001401	rpa1	85	30.755	Hippocampus_comes
WBGene00017546	rpa-1	64	30.374	ENSHCOG00000000351	RPA1	74	30.374	Hippocampus_comes
WBGene00017546	rpa-1	65	30.385	ENSSTOG00000022475	RPA1	71	31.066	Ictidomys_tridecemlineatus
WBGene00017546	rpa-1	66	32.280	ENSJJAG00000000876	Rpa1	73	32.280	Jaculus_jaculus
WBGene00017546	rpa-1	65	30.435	ENSKMAG00000000234	RPA1	71	30.435	Kryptolebias_marmoratus
WBGene00017546	rpa-1	76	30.409	ENSLBEG00000021604	rpa1	84	30.409	Labrus_bergylta
WBGene00017546	rpa-1	71	30.655	ENSMMUG00000011604	-	80	30.266	Macaca_mulatta
WBGene00017546	rpa-1	71	30.444	ENSMNEG00000031632	-	81	30.061	Macaca_nemestrina
WBGene00017546	rpa-1	76	31.102	ENSMAMG00000017993	rpa1	89	31.102	Mastacembelus_armatus
WBGene00017546	rpa-1	64	32.477	ENSMZEG00005007551	rpa1	73	32.477	Maylandia_zebra
WBGene00017546	rpa-1	73	30.382	ENSMGAG00000005315	RPA1	80	30.382	Meleagris_gallopavo
WBGene00017546	rpa-1	65	32.339	ENSMAUG00000010474	Rpa1	71	32.339	Mesocricetus_auratus
WBGene00017546	rpa-1	71	31.158	ENSMICG00000012867	RPA1	76	31.158	Microcebus_murinus
WBGene00017546	rpa-1	66	31.207	ENSMOCG00000013019	Rpa1	71	31.207	Microtus_ochrogaster
WBGene00017546	rpa-1	67	30.444	ENSMMOG00000010868	RPA1	76	30.024	Mola_mola
WBGene00017546	rpa-1	75	30.000	ENSMMOG00000014292	rpa1	84	30.000	Mola_mola
WBGene00017546	rpa-1	65	30.734	ENSMODG00000010549	RPA1	70	30.734	Monodelphis_domestica
WBGene00017546	rpa-1	72	32.231	ENSMALG00000011453	rpa1	83	32.231	Monopterus_albus
WBGene00017546	rpa-1	65	31.808	ENSMALG00000001208	RPA1	60	31.808	Monopterus_albus
WBGene00017546	rpa-1	71	30.316	ENSMUSG00000000751	Rpa1	75	30.737	Mus_musculus
WBGene00017546	rpa-1	64	31.235	MGP_PahariEiJ_G0017871	Rpa1	68	31.702	Mus_pahari
WBGene00017546	rpa-1	71	30.316	MGP_SPRETEiJ_G0017577	Rpa1	75	30.380	Mus_spretus
WBGene00017546	rpa-1	71	31.092	ENSMPUG00000013119	RPA1	76	31.513	Mustela_putorius_furo
WBGene00017546	rpa-1	67	30.649	ENSMLUG00000006113	RPA1	71	30.649	Myotis_lucifugus
WBGene00017546	rpa-1	65	33.638	ENSNBRG00000020595	rpa1	76	33.638	Neolamprologus_brichardi
WBGene00017546	rpa-1	59	34.667	ENSMEUG00000006714	RPA1	65	34.667	Notamacropus_eugenii
WBGene00017546	rpa-1	70	31.692	ENSORLG00000004856	rpa1	76	31.692	Oryzias_latipes
WBGene00017546	rpa-1	67	30.269	ENSORLG00000003368	RPA1	67	30.269	Oryzias_latipes
WBGene00017546	rpa-1	70	31.478	ENSORLG00020008980	rpa1	76	31.478	Oryzias_latipes_hni
WBGene00017546	rpa-1	67	30.045	ENSORLG00020015284	RPA1	66	30.045	Oryzias_latipes_hni
WBGene00017546	rpa-1	70	31.478	ENSORLG00015013982	rpa1	76	31.478	Oryzias_latipes_hsok
WBGene00017546	rpa-1	67	32.215	ENSOMEG00000004704	rpa1	74	32.500	Oryzias_melastigma
WBGene00017546	rpa-1	66	31.603	ENSOGAG00000005581	-	68	31.603	Otolemur_garnettii
WBGene00017546	rpa-1	71	30.867	ENSPPAG00000039680	RPA1	78	30.675	Pan_paniscus
WBGene00017546	rpa-1	72	30.453	ENSPPRG00000011807	RPA1	78	30.864	Panthera_pardus
WBGene00017546	rpa-1	72	30.453	ENSPTIG00000007898	RPA1	78	30.864	Panthera_tigris_altaica
WBGene00017546	rpa-1	71	30.867	ENSPTRG00000008539	RPA1	78	30.675	Pan_troglodytes
WBGene00017546	rpa-1	71	30.655	ENSPANG00000024592	RPA1	78	30.266	Papio_anubis
WBGene00017546	rpa-1	71	30.042	ENSPMGG00000000543	RPA1	80	30.042	Periophthalmus_magnuspinnatus
WBGene00017546	rpa-1	65	32.265	ENSPMGG00000011589	rpa1	75	32.723	Periophthalmus_magnuspinnatus
WBGene00017546	rpa-1	72	30.722	ENSPEMG00000021061	Rpa1	78	31.134	Peromyscus_maniculatus_bairdii
WBGene00017546	rpa-1	65	32.488	ENSPFOG00000003987	rpa1	71	32.488	Poecilia_formosa
WBGene00017546	rpa-1	68	32.080	ENSPMEG00000020602	rpa1	79	32.080	Poecilia_mexicana
WBGene00017546	rpa-1	60	30.500	ENSPREG00000010174	rpa1	66	30.500	Poecilia_reticulata
WBGene00017546	rpa-1	65	33.410	ENSPNYG00000016316	rpa1	77	33.410	Pundamilia_nyererei
WBGene00017546	rpa-1	72	30.021	ENSPNYG00000024165	RPA1	74	30.021	Pundamilia_nyererei
WBGene00017546	rpa-1	64	32.787	ENSRNOG00000003123	Rpa1	70	30.108	Rattus_norvegicus
WBGene00017546	rpa-1	64	31.713	YAR007C	RFA1	69	31.713	Saccharomyces_cerevisiae
WBGene00017546	rpa-1	70	31.116	ENSSBOG00000030233	RPA1	84	30.675	Saimiri_boliviensis_boliviensis
WBGene00017546	rpa-1	65	30.734	ENSSHAG00000007969	RPA1	69	30.734	Sarcophilus_harrisii
WBGene00017546	rpa-1	73	30.103	ENSSMAG00000019746	RPA1	72	30.103	Scophthalmus_maximus
WBGene00017546	rpa-1	76	31.128	ENSSDUG00000011949	rpa1	85	31.128	Seriola_dumerili
WBGene00017546	rpa-1	76	31.128	ENSSLDG00000011806	rpa1	85	31.128	Seriola_lalandi_dorsalis
WBGene00017546	rpa-1	65	34.096	ENSTRUG00000003616	rpa1	72	34.096	Takifugu_rubripes
WBGene00017546	rpa-1	65	31.409	ENSTBEG00000002709	RPA1	71	31.409	Tupaia_belangeri
WBGene00017546	rpa-1	79	33.600	ENSUAMG00000015676	RPA1	70	30.583	Ursus_americanus
WBGene00017546	rpa-1	69	30.435	ENSUMAG00000009328	RPA1	78	30.870	Ursus_maritimus
WBGene00017546	rpa-1	71	31.579	ENSVVUG00000021715	RPA1	76	31.579	Vulpes_vulpes
WBGene00017546	rpa-1	67	31.330	ENSXETG00000013538	rpa1	81	30.452	Xenopus_tropicalis
WBGene00017546	rpa-1	65	31.787	ENSXCOG00000010068	rpa1	72	32.067	Xiphophorus_couchianus
WBGene00017546	rpa-1	67	31.696	ENSXCOG00000009899	-	80	31.696	Xiphophorus_couchianus
WBGene00017546	rpa-1	68	32.301	ENSXMAG00000004102	rpa1	80	32.301	Xiphophorus_maculatus
WBGene00017546	rpa-1	68	31.486	ENSXMAG00000010333	RPA1	61	32.258	Xiphophorus_maculatus