EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00018776 (Gene tree)
Gene ID: -
Gene Symbol: F53H1.1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 12431 bases
Position: chrIV:1297222-1309652
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F53H1	DEAD	PF00270.29	4.8e-52	1	1
F53H1	DEAD	PF00270.29	6.9e-52	1	1
F53H1	DEAD	PF00270.29	2e-23	1	1
F53H1	DEAD	PF00270.29	3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F53H1.1a	-	3099	NM_001038322	F53H1.1a	970 (aa)	NP_001033411	Q965K2
F53H1.1b	-	2244	NM_001307556	F53H1.1b	747 (aa)	NP_001294485	U4PRR4
F53H1.1c	-	2619	NM_001307557	F53H1.1c	833 (aa)	NP_001294486	U4PEV8
F53H1.1d	-	1833	NM_001307558	F53H1.1d	610 (aa)	NP_001294487	U4PBN2
F53H1.1e	-	835	NM_001307508	F53H1.1e	235 (aa)	NP_001294437	U4PBH1

Gene Model

Click here to download WBGene00018776's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00018776's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00018776	F53H1.1	62	40.471	WBGene00010260	ddx-17	83	40.042
WBGene00018776	F53H1.1	51	32.216	WBGene00001840	hel-1	85	32.124
WBGene00018776	F53H1.1	52	38.119	WBGene00006888	vbh-1	62	38.119
WBGene00018776	F53H1.1	52	39.599	WBGene00013214	Y54G11A.3	77	39.500
WBGene00018776	F53H1.1	53	31.296	WBGene00011032	R05D11.4	68	31.540
WBGene00018776	F53H1.1	55	31.148	WBGene00019219	H20J04.4	85	30.751
WBGene00018776	F53H1.1	60	42.070	WBGene00008119	C46F11.4	69	38.811
WBGene00018776	F53H1.1	50	33.333	WBGene00018007	F33D11.10	91	33.333
WBGene00018776	F53H1.1	63	35.430	WBGene00019245	sacy-1	66	36.879

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00018776	F53H1.1	79	57.667	FBgn0030631	CG6227	70	48.324	Drosophila_melanogaster