EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00019246 (Gene tree)
Gene ID: -
Gene Symbol: rpb-5
Alias: -
Full Name: DNA-directed RNA polymerases I%2C II%2C and III subunit RPABC1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 948 bases
Position: chrI:6850409-6851356
Accession: Q9N5K2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
H27M09	RNA_pol_Rpb5_N	PF03871.14	2.3e-33	1	1
H27M09	RNA_pol_Rpb5_C	PF01191.19	3.7e-34	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
H27M09.2	-	858	NM_059560	H27M09.2	211 (aa)	NP_491961	Q9N5K2

Gene Model

Click here to download WBGene00019246's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00019246's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00019246	rpb-5	99	77.885	ENSG00000099817	POLR2E	99	78.788	Homo_sapiens
WBGene00019246	rpb-5	99	78.846	ENSAPOG00000002935	polr2eb	99	78.846	Acanthochromis_polyacanthus
WBGene00019246	rpb-5	99	77.885	ENSAMEG00000003159	POLR2E	99	77.885	Ailuropoda_melanoleuca
WBGene00019246	rpb-5	99	70.192	ENSACIG00000024371	polr2eb	99	70.192	Amphilophus_citrinellus
WBGene00019246	rpb-5	99	78.846	ENSAOCG00000018166	polr2eb	99	78.846	Amphiprion_ocellaris
WBGene00019246	rpb-5	99	78.846	ENSAPEG00000009000	polr2eb	99	78.846	Amphiprion_percula
WBGene00019246	rpb-5	99	78.846	ENSATEG00000023760	polr2eb	99	78.846	Anabas_testudineus
WBGene00019246	rpb-5	99	77.885	ENSANAG00000038488	POLR2E	99	77.885	Aotus_nancymaae
WBGene00019246	rpb-5	99	79.327	ENSACLG00000005254	polr2eb	99	79.327	Astatotilapia_calliptera
WBGene00019246	rpb-5	99	78.365	ENSAMXG00000018915	POLR2E	99	78.365	Astyanax_mexicanus
WBGene00019246	rpb-5	99	77.885	ENSBTAG00000020776	POLR2E	99	77.885	Bos_taurus
WBGene00019246	rpb-5	66	75.540	ENSCJAG00000007666	-	76	75.540	Callithrix_jacchus
WBGene00019246	rpb-5	99	75.481	ENSCAFG00000019546	POLR2E	99	75.481	Canis_familiaris
WBGene00019246	rpb-5	99	77.885	ENSCAFG00020017111	POLR2E	99	77.885	Canis_lupus_dingo
WBGene00019246	rpb-5	99	77.885	ENSCHIG00000014151	POLR2E	99	77.885	Capra_hircus
WBGene00019246	rpb-5	99	63.942	ENSTSYG00000026377	POLR2E	99	63.942	Carlito_syrichta
WBGene00019246	rpb-5	91	78.010	ENSCAPG00000010843	POLR2E	93	78.010	Cavia_aperea
WBGene00019246	rpb-5	99	77.885	ENSCPOG00000001542	POLR2E	99	77.885	Cavia_porcellus
WBGene00019246	rpb-5	99	77.885	ENSCCAG00000025658	POLR2E	99	77.885	Cebus_capucinus
WBGene00019246	rpb-5	99	77.885	ENSCATG00000008926	POLR2E	99	77.885	Cercocebus_atys
WBGene00019246	rpb-5	99	78.365	ENSCLAG00000014874	-	99	78.365	Chinchilla_lanigera
WBGene00019246	rpb-5	97	59.512	ENSCLAG00000009238	-	100	59.512	Chinchilla_lanigera
WBGene00019246	rpb-5	99	77.885	ENSCSAG00000012336	POLR2E	99	77.885	Chlorocebus_sabaeus
WBGene00019246	rpb-5	99	77.885	ENSCPBG00000009702	POLR2E	99	77.885	Chrysemys_picta_bellii
WBGene00019246	rpb-5	99	78.365	ENSCING00000024933	-	99	78.365	Ciona_intestinalis
WBGene00019246	rpb-5	99	77.885	ENSCANG00000025560	POLR2E	99	77.885	Colobus_angolensis_palliatus
WBGene00019246	rpb-5	99	78.365	ENSCGRG00001022927	Polr2e	99	78.365	Cricetulus_griseus_chok1gshd
WBGene00019246	rpb-5	99	73.239	ENSCGRG00000016441	Polr2e	99	73.239	Cricetulus_griseus_crigri
WBGene00019246	rpb-5	99	79.808	ENSCSEG00000007107	polr2eb	91	79.808	Cynoglossus_semilaevis
WBGene00019246	rpb-5	99	78.846	ENSCVAG00000019940	polr2eb	99	78.846	Cyprinodon_variegatus
WBGene00019246	rpb-5	99	78.365	ENSDARG00000026183	polr2eb	99	78.365	Danio_rerio
WBGene00019246	rpb-5	90	75.661	ENSDNOG00000044994	POLR2E	83	75.661	Dasypus_novemcinctus
WBGene00019246	rpb-5	99	77.885	ENSDORG00000001154	Polr2e	99	77.885	Dipodomys_ordii
WBGene00019246	rpb-5	99	77.885	FBgn0033571	Rpb5	99	77.885	Drosophila_melanogaster
WBGene00019246	rpb-5	73	75.325	ENSEBUG00000010159	-	75	75.325	Eptatretus_burgeri
WBGene00019246	rpb-5	68	74.306	ENSEASG00005021615	POLR2E	61	74.306	Equus_asinus_asinus
WBGene00019246	rpb-5	99	68.750	ENSECAG00000011124	POLR2E	99	68.750	Equus_caballus
WBGene00019246	rpb-5	99	77.885	ENSELUG00000020646	polr2e	99	77.885	Esox_lucius
WBGene00019246	rpb-5	99	77.885	ENSELUG00000005815	POLR2E	99	77.885	Esox_lucius
WBGene00019246	rpb-5	99	77.885	ENSFCAG00000007318	POLR2E	99	77.885	Felis_catus
WBGene00019246	rpb-5	91	78.010	ENSFALG00000013986	POLR2E	98	78.010	Ficedula_albicollis
WBGene00019246	rpb-5	99	77.885	ENSFDAG00000014539	POLR2E	99	77.885	Fukomys_damarensis
WBGene00019246	rpb-5	99	78.846	ENSFHEG00000022398	polr2eb	99	78.846	Fundulus_heteroclitus
WBGene00019246	rpb-5	99	78.365	ENSGMOG00000007615	polr2eb	99	78.365	Gadus_morhua
WBGene00019246	rpb-5	99	77.885	ENSGALG00000002591	POLR2E	99	77.885	Gallus_gallus
WBGene00019246	rpb-5	99	79.327	ENSGAFG00000005087	polr2eb	99	79.327	Gambusia_affinis
WBGene00019246	rpb-5	99	77.885	ENSGACG00000013247	polr2eb	99	77.885	Gasterosteus_aculeatus
WBGene00019246	rpb-5	99	77.885	ENSGAGG00000008356	POLR2E	99	77.885	Gopherus_agassizii
WBGene00019246	rpb-5	99	77.885	ENSGGOG00000011267	POLR2E	99	77.885	Gorilla_gorilla
WBGene00019246	rpb-5	67	77.305	ENSHBUG00000011099	polr2eb	99	77.305	Haplochromis_burtoni
WBGene00019246	rpb-5	99	77.885	ENSHGLG00000013330	POLR2E	99	77.885	Heterocephalus_glaber_female
WBGene00019246	rpb-5	99	77.885	ENSHGLG00100011014	POLR2E	99	77.885	Heterocephalus_glaber_male
WBGene00019246	rpb-5	99	78.846	ENSHCOG00000000906	polr2eb	99	78.846	Hippocampus_comes
WBGene00019246	rpb-5	53	73.214	ENSHCOG00000012099	-	88	73.214	Hippocampus_comes
WBGene00019246	rpb-5	99	78.846	ENSIPUG00000019801	polr2e	99	78.846	Ictalurus_punctatus
WBGene00019246	rpb-5	99	77.885	ENSSTOG00000002853	POLR2E	99	77.885	Ictidomys_tridecemlineatus
WBGene00019246	rpb-5	99	78.365	ENSJJAG00000016595	-	99	78.365	Jaculus_jaculus
WBGene00019246	rpb-5	73	63.226	ENSJJAG00000015812	-	97	63.226	Jaculus_jaculus
WBGene00019246	rpb-5	99	63.942	ENSJJAG00000003145	-	99	63.942	Jaculus_jaculus
WBGene00019246	rpb-5	99	78.846	ENSKMAG00000005954	polr2eb	99	78.846	Kryptolebias_marmoratus
WBGene00019246	rpb-5	99	78.846	ENSLBEG00000024802	polr2eb	99	78.846	Labrus_bergylta
WBGene00019246	rpb-5	99	79.808	ENSLACG00000013686	POLR2E	99	79.808	Latimeria_chalumnae
WBGene00019246	rpb-5	76	75.776	ENSLOCG00000004599	POLR2E	99	75.776	Lepisosteus_oculatus
WBGene00019246	rpb-5	99	63.810	ENSLAFG00000025587	POLR2E	99	63.810	Loxodonta_africana
WBGene00019246	rpb-5	99	77.885	ENSMFAG00000002884	POLR2E	99	77.885	Macaca_fascicularis
WBGene00019246	rpb-5	99	77.885	ENSMMUG00000013927	POLR2E	99	77.885	Macaca_mulatta
WBGene00019246	rpb-5	99	51.196	ENSMNEG00000033452	-	99	51.196	Macaca_nemestrina
WBGene00019246	rpb-5	99	77.885	ENSMNEG00000034046	-	99	77.885	Macaca_nemestrina
WBGene00019246	rpb-5	91	64.583	ENSMLEG00000012405	POLR2E	94	64.583	Mandrillus_leucophaeus
WBGene00019246	rpb-5	99	78.846	ENSMAMG00000018703	polr2eb	99	78.846	Mastacembelus_armatus
WBGene00019246	rpb-5	99	70.192	ENSMZEG00005010796	polr2eb	95	77.249	Maylandia_zebra
WBGene00019246	rpb-5	99	77.033	ENSMGAG00000003769	POLR2E	99	77.033	Meleagris_gallopavo
WBGene00019246	rpb-5	99	56.250	ENSMAUG00000011003	-	99	56.250	Mesocricetus_auratus
WBGene00019246	rpb-5	91	78.646	ENSMAUG00000010125	-	99	78.421	Mesocricetus_auratus
WBGene00019246	rpb-5	99	77.885	ENSMICG00000013063	POLR2E	99	77.885	Microcebus_murinus
WBGene00019246	rpb-5	99	78.365	ENSMOCG00000013414	Polr2e	99	78.365	Microtus_ochrogaster
WBGene00019246	rpb-5	99	69.231	ENSMMOG00000001161	polr2eb	99	69.231	Mola_mola
WBGene00019246	rpb-5	90	73.158	ENSMMOG00000001167	polr2eb	88	73.158	Mola_mola
WBGene00019246	rpb-5	99	77.885	ENSMODG00000005494	POLR2E	99	77.885	Monodelphis_domestica
WBGene00019246	rpb-5	99	79.327	ENSMALG00000021888	polr2eb	99	79.327	Monopterus_albus
WBGene00019246	rpb-5	99	78.365	MGP_CAROLIEiJ_G0015561	Polr2e	99	78.365	Mus_caroli
WBGene00019246	rpb-5	99	78.365	ENSMUSG00000004667	Polr2e	99	78.365	Mus_musculus
WBGene00019246	rpb-5	99	78.365	MGP_PahariEiJ_G0030974	Polr2e	99	78.365	Mus_pahari
WBGene00019246	rpb-5	99	78.365	MGP_SPRETEiJ_G0016379	Polr2e	99	78.365	Mus_spretus
WBGene00019246	rpb-5	99	77.404	ENSMPUG00000008953	POLR2E	99	77.404	Mustela_putorius_furo
WBGene00019246	rpb-5	65	70.803	ENSMLUG00000006376	-	92	66.443	Myotis_lucifugus
WBGene00019246	rpb-5	99	77.885	ENSMLUG00000013193	POLR2E	99	77.885	Myotis_lucifugus
WBGene00019246	rpb-5	85	57.542	ENSNGAG00000017344	-	96	57.542	Nannospalax_galili
WBGene00019246	rpb-5	99	78.365	ENSNGAG00000001147	Polr2e	99	78.365	Nannospalax_galili
WBGene00019246	rpb-5	99	70.192	ENSNBRG00000022772	polr2eb	99	70.192	Neolamprologus_brichardi
WBGene00019246	rpb-5	99	74.641	ENSNLEG00000001207	-	99	74.641	Nomascus_leucogenys
WBGene00019246	rpb-5	99	58.654	ENSNLEG00000031364	-	99	58.654	Nomascus_leucogenys
WBGene00019246	rpb-5	99	68.269	ENSOPRG00000008331	POLR2E	99	68.269	Ochotona_princeps
WBGene00019246	rpb-5	99	59.135	ENSODEG00000011490	-	99	59.135	Octodon_degus
WBGene00019246	rpb-5	99	77.885	ENSODEG00000013230	-	99	77.885	Octodon_degus
WBGene00019246	rpb-5	88	67.027	ENSODEG00000007985	-	99	67.027	Octodon_degus
WBGene00019246	rpb-5	99	78.846	ENSONIG00000002519	polr2eb	99	78.846	Oreochromis_niloticus
WBGene00019246	rpb-5	99	79.327	ENSORLG00000015346	polr2eb	99	79.327	Oryzias_latipes
WBGene00019246	rpb-5	99	79.327	ENSORLG00020020700	polr2e	99	79.327	Oryzias_latipes_hni
WBGene00019246	rpb-5	99	79.327	ENSORLG00015016842	polr2e	99	79.327	Oryzias_latipes_hsok
WBGene00019246	rpb-5	99	78.846	ENSOMEG00000002709	polr2eb	99	78.846	Oryzias_melastigma
WBGene00019246	rpb-5	99	77.885	ENSOGAG00000012311	POLR2E	99	77.885	Otolemur_garnettii
WBGene00019246	rpb-5	99	77.885	ENSOARG00000010994	POLR2E	99	77.885	Ovis_aries
WBGene00019246	rpb-5	90	77.895	ENSPPAG00000003145	POLR2E	99	77.895	Pan_paniscus
WBGene00019246	rpb-5	99	77.885	ENSPPRG00000000777	POLR2E	99	77.885	Panthera_pardus
WBGene00019246	rpb-5	91	61.458	ENSPTIG00000012237	POLR2E	98	72.368	Panthera_tigris_altaica
WBGene00019246	rpb-5	99	77.885	ENSPTRG00000010183	POLR2E	99	77.885	Pan_troglodytes
WBGene00019246	rpb-5	99	77.885	ENSPANG00000018011	POLR2E	99	77.885	Papio_anubis
WBGene00019246	rpb-5	99	79.327	ENSPKIG00000024123	POLR2E	99	79.327	Paramormyrops_kingsleyae
WBGene00019246	rpb-5	99	78.365	ENSPKIG00000009607	POLR2E	99	78.365	Paramormyrops_kingsleyae
WBGene00019246	rpb-5	97	75.490	ENSPSIG00000002870	POLR2E	98	75.490	Pelodiscus_sinensis
WBGene00019246	rpb-5	99	69.712	ENSPMGG00000014354	polr2eb	99	69.712	Periophthalmus_magnuspinnatus
WBGene00019246	rpb-5	99	78.365	ENSPEMG00000023261	Polr2e	99	78.365	Peromyscus_maniculatus_bairdii
WBGene00019246	rpb-5	89	75.532	ENSPCIG00000007312	POLR2E	74	75.532	Phascolarctos_cinereus
WBGene00019246	rpb-5	99	79.327	ENSPFOG00000005734	polr2eb	99	79.327	Poecilia_formosa
WBGene00019246	rpb-5	99	79.327	ENSPLAG00000014496	polr2eb	99	79.327	Poecilia_latipinna
WBGene00019246	rpb-5	99	79.327	ENSPMEG00000008053	polr2eb	99	79.327	Poecilia_mexicana
WBGene00019246	rpb-5	99	79.327	ENSPREG00000006489	polr2eb	99	79.327	Poecilia_reticulata
WBGene00019246	rpb-5	99	71.770	ENSPPYG00000009305	POLR2E	99	71.770	Pongo_abelii
WBGene00019246	rpb-5	53	74.775	ENSPCAG00000016605	POLR2E	100	74.775	Procavia_capensis
WBGene00019246	rpb-5	99	77.885	ENSPCOG00000014491	POLR2E	99	77.885	Propithecus_coquereli
WBGene00019246	rpb-5	55	75.652	ENSPVAG00000007718	-	55	75.652	Pteropus_vampyrus
WBGene00019246	rpb-5	90	77.249	ENSPNYG00000019797	polr2eb	95	77.249	Pundamilia_nyererei
WBGene00019246	rpb-5	99	78.846	ENSPNAG00000026263	POLR2E	99	78.846	Pygocentrus_nattereri
WBGene00019246	rpb-5	99	78.365	ENSRNOG00000013545	Polr2e	99	78.365	Rattus_norvegicus
WBGene00019246	rpb-5	99	77.885	ENSRBIG00000028726	-	99	77.885	Rhinopithecus_bieti
WBGene00019246	rpb-5	99	55.981	ENSRBIG00000027259	-	99	55.981	Rhinopithecus_bieti
WBGene00019246	rpb-5	99	77.885	ENSRROG00000043763	POLR2E	99	77.885	Rhinopithecus_roxellana
WBGene00019246	rpb-5	99	44.651	YBR154C	RPB5	99	44.651	Saccharomyces_cerevisiae
WBGene00019246	rpb-5	99	77.885	ENSSBOG00000027241	POLR2E	99	77.885	Saimiri_boliviensis_boliviensis
WBGene00019246	rpb-5	99	77.885	ENSSHAG00000010690	POLR2E	99	77.885	Sarcophilus_harrisii
WBGene00019246	rpb-5	99	78.846	ENSSFOG00015006073	polr2e	99	78.846	Scleropages_formosus
WBGene00019246	rpb-5	99	78.846	ENSSMAG00000012782	polr2eb	99	78.846	Scophthalmus_maximus
WBGene00019246	rpb-5	99	78.846	ENSSDUG00000003352	polr2eb	99	78.846	Seriola_dumerili
WBGene00019246	rpb-5	99	78.846	ENSSLDG00000004965	polr2eb	99	78.846	Seriola_lalandi_dorsalis
WBGene00019246	rpb-5	99	76.923	ENSSPUG00000006114	POLR2E	99	76.923	Sphenodon_punctatus
WBGene00019246	rpb-5	99	78.846	ENSSPAG00000017556	polr2eb	99	78.846	Stegastes_partitus
WBGene00019246	rpb-5	99	77.885	ENSSSCG00000021472	POLR2E	99	77.885	Sus_scrofa
WBGene00019246	rpb-5	65	69.065	ENSTGUG00000000922	POLR2E	98	69.065	Taeniopygia_guttata
WBGene00019246	rpb-5	94	75.758	ENSTRUG00000018238	polr2eb	99	69.712	Takifugu_rubripes
WBGene00019246	rpb-5	99	78.846	ENSTNIG00000013187	polr2eb	99	78.846	Tetraodon_nigroviridis
WBGene00019246	rpb-5	99	77.404	ENSTTRG00000001484	POLR2E	99	77.404	Tursiops_truncatus
WBGene00019246	rpb-5	99	68.269	ENSUAMG00000009166	POLR2E	99	68.269	Ursus_americanus
WBGene00019246	rpb-5	99	77.885	ENSVVUG00000022818	POLR2E	54	77.885	Vulpes_vulpes
WBGene00019246	rpb-5	99	77.885	ENSXETG00000003291	polr2e	99	77.885	Xenopus_tropicalis
WBGene00019246	rpb-5	99	70.192	ENSXCOG00000009197	polr2eb	99	70.192	Xiphophorus_couchianus
WBGene00019246	rpb-5	99	79.327	ENSXMAG00000026495	polr2eb	99	79.327	Xiphophorus_maculatus