EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00019249 (Gene tree)
Gene ID: -
Gene Symbol: H28G03.1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 2733 bases
Position: chrX:5216363-5219095
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
H28G03	RRM_1	PF00076.22	1.9e-25	1	2
H28G03	RRM_1	PF00076.22	1.9e-25	2	2
H28G03	RRM_1	PF00076.22	2.4e-25	1	2
H28G03	RRM_1	PF00076.22	2.4e-25	2	2
H28G03	RRM_1	PF00076.22	2.5e-25	1	2
H28G03	RRM_1	PF00076.22	2.5e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
H28G03.1b	-	1917	-	H28G03.1b	315 (aa)	NP_741785	H2L0D1
H28G03.1c	-	1451	-	H28G03.1c	335 (aa)	NP_741784	Q8MXF3
H28G03.1a	-	2131	-	H28G03.1a	336 (aa)	NP_741783	H2L0D0

Gene Model

Click here to download WBGene00019249's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00019249's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00019249	H28G03.1	55	41.341	WBGene00001999	hrp-1	51	41.341
WBGene00019249	H28G03.1	55	42.857	WBGene00003423	msi-1	53	42.857
WBGene00019249	H28G03.1	51	34.177	WBGene00022235	sqd-1	52	34.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00019249	H28G03.1	55	39.548	ENSCING00000004062	-	52	39.548	Ciona_intestinalis
WBGene00019249	H28G03.1	62	36.000	ENSCSAVG00000000472	-	87	37.853	Ciona_savignyi
WBGene00019249	H28G03.1	56	38.202	ENSMMOG00000004241	-	89	36.957	Mola_mola
WBGene00019249	H28G03.1	56	37.778	ENSNBRG00000014522	-	79	37.778	Neolamprologus_brichardi
WBGene00019249	H28G03.1	56	36.667	ENSSLDG00000024705	-	80	36.667	Seriola_lalandi_dorsalis