EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00019299 (Gene tree)
Gene ID: -
Gene Symbol: snai-1
Alias: snai-2
Full Name: SNAIl family zinc finger 2 transcription factor homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 2186 bases
Position: chrIV:311512-313697
Accession: O45103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
K02D7	zf-C2H2	PF00096.26	2.4e-19	1	3
K02D7	zf-C2H2	PF00096.26	2.4e-19	2	3
K02D7	zf-C2H2	PF00096.26	2.4e-19	3	3
K02D7	zf-met	PF12874.7	1.5e-06	1	2
K02D7	zf-met	PF12874.7	1.5e-06	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
K02D7.2	-	622	NM_067501	K02D7.2	193 (aa)	NP_499902	O45103

Gene Model

Click here to download WBGene00019299's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00019299's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00019299	snai-1	69	50.735	WBGene00000468	ces-1	50	50.735

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00019299	snai-1	53	61.765	ENSG00000124216	SNAI1	53	50.360	Homo_sapiens
WBGene00019299	snai-1	70	49.677	ENSAPOG00000016426	-	57	49.677	Acanthochromis_polyacanthus
WBGene00019299	snai-1	73	46.541	ENSACIG00000009443	-	57	46.711	Amphilophus_citrinellus
WBGene00019299	snai-1	72	55.944	ENSACIG00000018641	snai2	55	55.944	Amphilophus_citrinellus
WBGene00019299	snai-1	70	49.032	ENSAOCG00000019753	-	57	49.032	Amphiprion_ocellaris
WBGene00019299	snai-1	72	55.944	ENSAOCG00000017968	snai2	55	55.944	Amphiprion_ocellaris
WBGene00019299	snai-1	70	51.064	ENSAPEG00000007647	-	58	51.064	Amphiprion_percula
WBGene00019299	snai-1	72	55.944	ENSAPEG00000002983	snai2	55	55.944	Amphiprion_percula
WBGene00019299	snai-1	72	55.944	ENSATEG00000006892	snai2	55	55.944	Anabas_testudineus
WBGene00019299	snai-1	55	60.185	ENSATEG00000004944	-	57	46.452	Anabas_testudineus
WBGene00019299	snai-1	73	55.556	ENSAPLG00000003920	-	53	55.944	Anas_platyrhynchos
WBGene00019299	snai-1	78	51.634	ENSAPLG00000014633	-	60	55.147	Anas_platyrhynchos
WBGene00019299	snai-1	73	55.556	ENSACAG00000012332	-	53	55.944	Anolis_carolinensis
WBGene00019299	snai-1	70	55.072	ENSACAG00000015607	SNAI1	54	55.072	Anolis_carolinensis
WBGene00019299	snai-1	65	52.632	ENSANAG00000028666	SNAI1	52	53.623	Aotus_nancymaae
WBGene00019299	snai-1	72	55.944	ENSACLG00000018551	snai2	59	55.944	Astatotilapia_calliptera
WBGene00019299	snai-1	68	47.297	ENSACLG00000026461	-	57	46.358	Astatotilapia_calliptera
WBGene00019299	snai-1	82	46.286	ENSAMXG00000039849	snai1b	58	49.342	Astyanax_mexicanus
WBGene00019299	snai-1	81	54.375	ENSAMXG00000038235	snai2	55	57.042	Astyanax_mexicanus
WBGene00019299	snai-1	53	61.765	ENSCJAG00000000518	SNAI1	50	53.383	Callithrix_jacchus
WBGene00019299	snai-1	73	55.556	ENSCPOG00000033449	-	53	55.944	Cavia_porcellus
WBGene00019299	snai-1	65	51.880	ENSCCAG00000029550	SNAI1	50	51.880	Cebus_capucinus
WBGene00019299	snai-1	53	61.765	ENSCATG00000041452	SNAI1	50	53.383	Cercocebus_atys
WBGene00019299	snai-1	53	61.765	ENSCSAG00000015065	SNAI1	50	53.383	Chlorocebus_sabaeus
WBGene00019299	snai-1	73	55.556	ENSCHOG00000007046	-	55	55.944	Choloepus_hoffmanni
WBGene00019299	snai-1	53	61.765	ENSCANG00000036400	SNAI1	50	53.383	Colobus_angolensis_palliatus
WBGene00019299	snai-1	68	51.748	ENSCSEG00000021022	-	58	52.448	Cynoglossus_semilaevis
WBGene00019299	snai-1	72	55.944	ENSCSEG00000010311	snai2	55	55.944	Cynoglossus_semilaevis
WBGene00019299	snai-1	67	50.336	ENSCVAG00000009930	-	57	49.342	Cyprinodon_variegatus
WBGene00019299	snai-1	74	55.782	ENSCVAG00000016483	snai2	54	55.862	Cyprinodon_variegatus
WBGene00019299	snai-1	72	57.042	ENSDARG00000040046	snai2	55	57.042	Danio_rerio
WBGene00019299	snai-1	73	55.556	ENSDNOG00000035997	-	53	55.944	Dasypus_novemcinctus
WBGene00019299	snai-1	55	62.037	ENSDNOG00000023834	-	53	53.237	Dasypus_novemcinctus
WBGene00019299	snai-1	55	58.333	ENSDNOG00000024891	-	52	50.360	Dasypus_novemcinctus
WBGene00019299	snai-1	74	46.939	ENSETEG00000005777	-	54	47.260	Echinops_telfairi
WBGene00019299	snai-1	73	55.556	ENSEASG00005009186	-	53	55.944	Equus_asinus_asinus
WBGene00019299	snai-1	73	55.556	ENSECAG00000010120	SNAI2	53	55.944	Equus_caballus
WBGene00019299	snai-1	70	50.000	ENSELUG00000002056	SNAI1	57	50.676	Esox_lucius
WBGene00019299	snai-1	73	55.556	ENSFCAG00000015779	-	53	55.944	Felis_catus
WBGene00019299	snai-1	55	62.037	ENSFCAG00000010558	SNAI1	52	53.285	Felis_catus
WBGene00019299	snai-1	73	55.556	ENSFALG00000005762	-	53	55.944	Ficedula_albicollis
WBGene00019299	snai-1	74	55.782	ENSFHEG00000012561	snai2	56	55.862	Fundulus_heteroclitus
WBGene00019299	snai-1	72	55.556	ENSGMOG00000002669	snai2	55	55.556	Gadus_morhua
WBGene00019299	snai-1	64	55.303	ENSGMOG00000000127	-	54	55.303	Gadus_morhua
WBGene00019299	snai-1	73	55.556	ENSGALG00000030902	-	55	55.944	Gallus_gallus
WBGene00019299	snai-1	69	55.147	ENSGALG00000008018	SNAI1	55	54.225	Gallus_gallus
WBGene00019299	snai-1	74	55.102	ENSGAFG00000021427	snai2	56	55.172	Gambusia_affinis
WBGene00019299	snai-1	68	49.342	ENSGAFG00000021126	-	56	49.342	Gambusia_affinis
WBGene00019299	snai-1	72	55.944	ENSGACG00000017935	snai2	55	55.172	Gasterosteus_aculeatus
WBGene00019299	snai-1	53	60.194	ENSGACG00000001618	-	56	47.945	Gasterosteus_aculeatus
WBGene00019299	snai-1	83	51.534	ENSGAGG00000022705	SNAI1	55	55.072	Gopherus_agassizii
WBGene00019299	snai-1	53	61.765	ENSGGOG00000024422	SNAI1	50	51.880	Gorilla_gorilla
WBGene00019299	snai-1	68	47.297	ENSHBUG00000005726	-	57	46.358	Haplochromis_burtoni
WBGene00019299	snai-1	72	55.944	ENSHBUG00000007764	snai2	59	55.944	Haplochromis_burtoni
WBGene00019299	snai-1	73	55.556	ENSHGLG00000009439	SNAI2	53	55.944	Heterocephalus_glaber_female
WBGene00019299	snai-1	73	55.556	ENSHGLG00100007484	SNAI2	53	55.944	Heterocephalus_glaber_male
WBGene00019299	snai-1	67	50.360	ENSHCOG00000020556	-	53	51.079	Hippocampus_comes
WBGene00019299	snai-1	67	53.237	ENSSTOG00000005866	SNAI1	53	53.237	Ictidomys_tridecemlineatus
WBGene00019299	snai-1	73	55.556	ENSJJAG00000017495	-	53	55.944	Jaculus_jaculus
WBGene00019299	snai-1	55	61.111	ENSKMAG00000018546	-	57	48.387	Kryptolebias_marmoratus
WBGene00019299	snai-1	73	55.862	ENSKMAG00000005164	snai2	56	55.172	Kryptolebias_marmoratus
WBGene00019299	snai-1	72	55.944	ENSLBEG00000000972	snai2	58	55.944	Labrus_bergylta
WBGene00019299	snai-1	70	47.742	ENSLBEG00000006963	-	57	47.742	Labrus_bergylta
WBGene00019299	snai-1	72	56.338	ENSLACG00000005413	snai2	53	56.338	Latimeria_chalumnae
WBGene00019299	snai-1	80	52.532	ENSLACG00000017707	SNAI1	55	55.634	Latimeria_chalumnae
WBGene00019299	snai-1	83	47.594	ENSLOCG00000004443	snai1a	58	54.110	Lepisosteus_oculatus
WBGene00019299	snai-1	53	61.765	ENSMFAG00000000994	SNAI1	50	53.383	Macaca_fascicularis
WBGene00019299	snai-1	53	61.765	ENSMNEG00000036933	SNAI1	50	53.383	Macaca_nemestrina
WBGene00019299	snai-1	53	61.765	ENSMLEG00000039236	SNAI1	50	53.383	Mandrillus_leucophaeus
WBGene00019299	snai-1	72	55.944	ENSMAMG00000015632	snai2	55	55.944	Mastacembelus_armatus
WBGene00019299	snai-1	70	48.387	ENSMAMG00000010384	-	57	48.387	Mastacembelus_armatus
WBGene00019299	snai-1	72	55.944	ENSMZEG00005025060	snai2	59	55.944	Maylandia_zebra
WBGene00019299	snai-1	68	47.297	ENSMZEG00005026596	-	57	46.358	Maylandia_zebra
WBGene00019299	snai-1	69	55.147	ENSMGAG00000009447	SNAI1	55	54.225	Meleagris_gallopavo
WBGene00019299	snai-1	73	55.556	ENSMGAG00000010813	-	53	55.944	Meleagris_gallopavo
WBGene00019299	snai-1	73	55.556	ENSMICG00000000335	-	53	55.944	Microcebus_murinus
WBGene00019299	snai-1	55	61.111	ENSMICG00000042228	SNAI1	53	53.237	Microcebus_murinus
WBGene00019299	snai-1	65	58.462	ENSMMOG00000016695	snai2	55	58.462	Mola_mola
WBGene00019299	snai-1	72	49.032	ENSMMOG00000020343	-	57	50.676	Mola_mola
WBGene00019299	snai-1	70	51.429	ENSMODG00000016309	SNAI1	56	50.685	Monodelphis_domestica
WBGene00019299	snai-1	72	56.338	ENSMALG00000021318	snai2	58	56.338	Monopterus_albus
WBGene00019299	snai-1	88	43.564	ENSMALG00000001010	-	59	49.669	Monopterus_albus
WBGene00019299	snai-1	73	54.861	ENSNGAG00000009442	-	53	55.245	Nannospalax_galili
WBGene00019299	snai-1	72	55.944	ENSNBRG00000011785	snai2	59	55.944	Neolamprologus_brichardi
WBGene00019299	snai-1	68	47.297	ENSNBRG00000014403	-	58	46.358	Neolamprologus_brichardi
WBGene00019299	snai-1	53	61.765	ENSNLEG00000006985	SNAI1	50	53.383	Nomascus_leucogenys
WBGene00019299	snai-1	73	55.556	ENSODEG00000003654	-	53	55.944	Octodon_degus
WBGene00019299	snai-1	72	55.944	ENSONIG00000009542	snai2	55	55.944	Oreochromis_niloticus
WBGene00019299	snai-1	53	60.952	ENSONIG00000017451	-	57	46.358	Oreochromis_niloticus
WBGene00019299	snai-1	70	53.957	ENSOANG00000008681	SNAI1	54	53.957	Ornithorhynchus_anatinus
WBGene00019299	snai-1	73	55.556	ENSOCUG00000012254	-	53	55.944	Oryctolagus_cuniculus
WBGene00019299	snai-1	72	55.944	ENSORLG00000017475	snai2	55	55.944	Oryzias_latipes
WBGene00019299	snai-1	66	50.350	ENSORLG00000009246	-	54	50.350	Oryzias_latipes
WBGene00019299	snai-1	72	55.944	ENSORLG00020008787	snai2	57	55.944	Oryzias_latipes_hni
WBGene00019299	snai-1	66	50.350	ENSORLG00020001758	-	54	50.350	Oryzias_latipes_hni
WBGene00019299	snai-1	72	55.944	ENSORLG00015008609	snai2	55	55.944	Oryzias_latipes_hsok
WBGene00019299	snai-1	51	63.636	ENSORLG00015019424	-	54	49.650	Oryzias_latipes_hsok
WBGene00019299	snai-1	72	55.944	ENSOMEG00000006591	snai2	57	55.944	Oryzias_melastigma
WBGene00019299	snai-1	66	50.350	ENSOMEG00000012928	-	57	48.684	Oryzias_melastigma
WBGene00019299	snai-1	67	53.957	ENSOGAG00000030111	SNAI1	53	53.957	Otolemur_garnettii
WBGene00019299	snai-1	73	54.861	ENSOGAG00000010500	-	53	55.245	Otolemur_garnettii
WBGene00019299	snai-1	55	62.037	ENSPPRG00000013272	SNAI1	52	53.285	Panthera_pardus
WBGene00019299	snai-1	53	61.765	ENSPANG00000007536	SNAI1	50	53.383	Papio_anubis
WBGene00019299	snai-1	66	52.555	ENSPKIG00000006393	snai1a	57	50.676	Paramormyrops_kingsleyae
WBGene00019299	snai-1	83	51.534	ENSPSIG00000003607	SNAI1	53	55.072	Pelodiscus_sinensis
WBGene00019299	snai-1	68	48.684	ENSPMGG00000006947	-	61	48.684	Periophthalmus_magnuspinnatus
WBGene00019299	snai-1	73	50.685	ENSPCIG00000023282	SNAI1	56	50.685	Phascolarctos_cinereus
WBGene00019299	snai-1	68	51.449	ENSPFOG00000008667	-	58	49.342	Poecilia_formosa
WBGene00019299	snai-1	74	55.102	ENSPFOG00000014336	snai2	56	55.172	Poecilia_formosa
WBGene00019299	snai-1	68	49.342	ENSPLAG00000010605	-	58	49.342	Poecilia_latipinna
WBGene00019299	snai-1	74	55.102	ENSPLAG00000009941	snai2	56	55.172	Poecilia_latipinna
WBGene00019299	snai-1	68	49.342	ENSPMEG00000007205	-	58	49.342	Poecilia_mexicana
WBGene00019299	snai-1	74	55.102	ENSPMEG00000024022	snai2	56	55.172	Poecilia_mexicana
WBGene00019299	snai-1	66	50.000	ENSPREG00000018470	-	54	49.324	Poecilia_reticulata
WBGene00019299	snai-1	53	61.765	ENSPPYG00000011122	SNAI1	50	53.383	Pongo_abelii
WBGene00019299	snai-1	73	55.172	ENSPCAG00000001788	-	54	55.944	Procavia_capensis
WBGene00019299	snai-1	55	61.111	ENSPCOG00000020538	SNAI1	53	53.237	Propithecus_coquereli
WBGene00019299	snai-1	68	47.297	ENSPNYG00000001207	-	58	46.358	Pundamilia_nyererei
WBGene00019299	snai-1	72	55.944	ENSPNYG00000015217	snai2	59	55.944	Pundamilia_nyererei
WBGene00019299	snai-1	76	55.333	ENSPNAG00000015896	snai2	55	57.042	Pygocentrus_nattereri
WBGene00019299	snai-1	73	55.556	ENSRNOG00000047699	Snai2	53	55.944	Rattus_norvegicus
WBGene00019299	snai-1	53	61.765	ENSRBIG00000026992	SNAI1	50	53.383	Rhinopithecus_bieti
WBGene00019299	snai-1	53	61.765	ENSRROG00000043753	SNAI1	50	53.383	Rhinopithecus_roxellana
WBGene00019299	snai-1	65	52.632	ENSSBOG00000034760	SNAI1	50	54.135	Saimiri_boliviensis_boliviensis
WBGene00019299	snai-1	70	51.429	ENSSHAG00000011015	SNAI1	56	50.685	Sarcophilus_harrisii
WBGene00019299	snai-1	66	54.745	ENSSFOG00015021578	snai1a	53	54.745	Scleropages_formosus
WBGene00019299	snai-1	70	49.669	ENSSMAG00000008834	-	55	49.669	Scophthalmus_maximus
WBGene00019299	snai-1	72	56.338	ENSSMAG00000019364	snai2	55	56.338	Scophthalmus_maximus
WBGene00019299	snai-1	72	55.944	ENSSDUG00000018060	snai2	55	55.944	Seriola_dumerili
WBGene00019299	snai-1	70	49.669	ENSSDUG00000017250	-	55	49.669	Seriola_dumerili
WBGene00019299	snai-1	70	49.669	ENSSLDG00000025359	-	55	49.669	Seriola_lalandi_dorsalis
WBGene00019299	snai-1	72	55.944	ENSSLDG00000012852	snai2	59	55.944	Seriola_lalandi_dorsalis
WBGene00019299	snai-1	80	52.229	ENSSPUG00000018057	SNAI1	53	55.072	Sphenodon_punctatus
WBGene00019299	snai-1	72	55.944	ENSSPAG00000022061	snai2	55	55.944	Stegastes_partitus
WBGene00019299	snai-1	70	49.032	ENSSPAG00000001098	-	57	49.032	Stegastes_partitus
WBGene00019299	snai-1	73	55.556	ENSTGUG00000010914	-	53	55.944	Taeniopygia_guttata
WBGene00019299	snai-1	69	55.147	ENSTGUG00000008724	SNAI1	54	55.147	Taeniopygia_guttata
WBGene00019299	snai-1	72	56.338	ENSTRUG00000025588	snai2	55	56.338	Takifugu_rubripes
WBGene00019299	snai-1	72	56.338	ENSTNIG00000008504	snai2	55	56.338	Tetraodon_nigroviridis
WBGene00019299	snai-1	55	62.037	ENSTBEG00000012262	SNAI1	57	62.037	Tupaia_belangeri
WBGene00019299	snai-1	82	51.852	ENSXETG00000027366	snai1	55	54.167	Xenopus_tropicalis
WBGene00019299	snai-1	74	55.102	ENSXCOG00000015084	snai2	56	55.172	Xiphophorus_couchianus
WBGene00019299	snai-1	74	55.102	ENSXMAG00000019030	snai2	56	55.172	Xiphophorus_maculatus
WBGene00019299	snai-1	68	49.342	ENSXMAG00000015281	-	58	49.342	Xiphophorus_maculatus