EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00019402 (Gene tree)
Gene ID: -
Gene Symbol: syf-2
Alias: -
Full Name: Pre-mRNA-splicing factor syf-2
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 959 bases
Position: chrIII:7161157-7162115
Accession: Q09385
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
K04G7	SYF2	PF08231.12	3e-45	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
K04G7.11	-	864	NM_066165	K04G7.11	234 (aa)	NP_498566	Q09385

Gene Model

Click here to download WBGene00019402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00019402's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00019402	syf-2	90	51.185	ENSG00000117614	SYF2	86	51.429	Homo_sapiens
WBGene00019402	syf-2	90	52.133	ENSAPOG00000001174	syf2	87	52.857	Acanthochromis_polyacanthus
WBGene00019402	syf-2	99	46.581	ENSAMEG00000010115	-	86	50.476	Ailuropoda_melanoleuca
WBGene00019402	syf-2	83	51.031	ENSAMEG00000010134	-	98	51.031	Ailuropoda_melanoleuca
WBGene00019402	syf-2	90	50.476	ENSACIG00000023688	syf2	83	50.952	Amphilophus_citrinellus
WBGene00019402	syf-2	82	50.777	ENSAOCG00000010912	syf2	60	51.295	Amphiprion_ocellaris
WBGene00019402	syf-2	100	49.789	ENSAOCG00000022046	syf2	89	52.857	Amphiprion_ocellaris
WBGene00019402	syf-2	90	52.133	ENSAPEG00000018858	syf2	80	52.857	Amphiprion_percula
WBGene00019402	syf-2	90	50.943	ENSATEG00000007745	syf2	87	51.659	Anabas_testudineus
WBGene00019402	syf-2	85	53.266	ENSAPLG00000016435	SYF2	98	53.266	Anas_platyrhynchos
WBGene00019402	syf-2	87	53.202	ENSACAG00000013653	-	99	53.695	Anolis_carolinensis
WBGene00019402	syf-2	65	47.059	ENSACAG00000026777	-	90	42.484	Anolis_carolinensis
WBGene00019402	syf-2	90	50.711	ENSANAG00000032473	SYF2	86	50.952	Aotus_nancymaae
WBGene00019402	syf-2	90	49.763	ENSACLG00000019916	syf2	87	50.476	Astatotilapia_calliptera
WBGene00019402	syf-2	95	48.198	ENSAMXG00000004051	syf2	87	50.952	Astyanax_mexicanus
WBGene00019402	syf-2	99	47.863	ENSBTAG00000001651	SYF2	88	50.952	Bos_taurus
WBGene00019402	syf-2	90	50.711	ENSCJAG00000046570	SYF2	94	45.263	Callithrix_jacchus
WBGene00019402	syf-2	90	50.237	ENSCAFG00000012895	-	85	50.476	Canis_familiaris
WBGene00019402	syf-2	88	47.573	ENSCAFG00000030331	-	89	47.573	Canis_familiaris
WBGene00019402	syf-2	90	50.237	ENSCAFG00020021091	-	85	50.476	Canis_lupus_dingo
WBGene00019402	syf-2	78	46.995	ENSCAFG00020021094	-	97	46.277	Canis_lupus_dingo
WBGene00019402	syf-2	99	47.210	ENSCHIG00000020874	SYF2	86	50.952	Capra_hircus
WBGene00019402	syf-2	90	50.711	ENSTSYG00000005114	SYF2	86	50.952	Carlito_syrichta
WBGene00019402	syf-2	85	51.010	ENSCAPG00000010006	SYF2	99	51.010	Cavia_aperea
WBGene00019402	syf-2	99	46.983	ENSCPOG00000005326	SYF2	85	50.476	Cavia_porcellus
WBGene00019402	syf-2	90	50.711	ENSCCAG00000022459	SYF2	94	45.263	Cebus_capucinus
WBGene00019402	syf-2	99	47.639	ENSCATG00000026917	SYF2	86	51.905	Cercocebus_atys
WBGene00019402	syf-2	99	47.845	ENSCLAG00000008474	SYF2	85	51.429	Chinchilla_lanigera
WBGene00019402	syf-2	99	46.781	ENSCSAG00000000948	SYF2	86	51.905	Chlorocebus_sabaeus
WBGene00019402	syf-2	54	44.444	ENSCHOG00000005273	-	76	44.444	Choloepus_hoffmanni
WBGene00019402	syf-2	90	52.607	ENSCPBG00000025073	SYF2	84	52.857	Chrysemys_picta_bellii
WBGene00019402	syf-2	90	40.000	ENSCING00000003017	-	88	40.000	Ciona_intestinalis
WBGene00019402	syf-2	90	39.810	ENSCSAVG00000006627	-	96	39.810	Ciona_savignyi
WBGene00019402	syf-2	99	41.631	ENSCANG00000037322	SYF2	83	45.714	Colobus_angolensis_palliatus
WBGene00019402	syf-2	99	46.473	ENSCGRG00001020733	Syf2	86	50.476	Cricetulus_griseus_chok1gshd
WBGene00019402	syf-2	85	50.505	ENSCGRG00000005095	Syf2	95	50.754	Cricetulus_griseus_crigri
WBGene00019402	syf-2	90	51.643	ENSCSEG00000000117	syf2	87	51.887	Cynoglossus_semilaevis
WBGene00019402	syf-2	90	51.905	ENSCVAG00000019543	syf2	87	52.381	Cyprinodon_variegatus
WBGene00019402	syf-2	90	49.763	ENSDARG00000004706	syf2	87	49.763	Danio_rerio
WBGene00019402	syf-2	99	48.069	ENSDNOG00000047605	SYF2	85	51.905	Dasypus_novemcinctus
WBGene00019402	syf-2	99	46.352	ENSDORG00000001274	Syf2	85	50.476	Dipodomys_ordii
WBGene00019402	syf-2	94	45.495	FBgn0033556	CG12343	96	46.330	Drosophila_melanogaster
WBGene00019402	syf-2	93	39.171	ENSETEG00000015729	SYF2	85	41.327	Echinops_telfairi
WBGene00019402	syf-2	85	37.500	ENSEBUG00000015402	syf2	96	37.500	Eptatretus_burgeri
WBGene00019402	syf-2	90	50.711	ENSEASG00005004224	-	85	50.952	Equus_asinus_asinus
WBGene00019402	syf-2	99	44.206	ENSEASG00005004232	-	86	47.619	Equus_asinus_asinus
WBGene00019402	syf-2	99	47.619	ENSECAG00000010440	-	87	50.952	Equus_caballus
WBGene00019402	syf-2	99	47.210	ENSECAG00000012023	-	85	50.952	Equus_caballus
WBGene00019402	syf-2	74	38.953	ENSEEUG00000015084	SYF2	80	42.953	Erinaceus_europaeus
WBGene00019402	syf-2	100	49.167	ENSELUG00000003465	syf2	87	52.133	Esox_lucius
WBGene00019402	syf-2	98	47.598	ENSFCAG00000043095	-	85	50.952	Felis_catus
WBGene00019402	syf-2	90	51.185	ENSFCAG00000010324	-	72	51.429	Felis_catus
WBGene00019402	syf-2	88	49.515	ENSFALG00000000460	SYF2	85	50.476	Ficedula_albicollis
WBGene00019402	syf-2	99	48.276	ENSFDAG00000008310	SYF2	86	51.429	Fukomys_damarensis
WBGene00019402	syf-2	90	42.453	ENSFHEG00000007238	syf2	92	43.128	Fundulus_heteroclitus
WBGene00019402	syf-2	90	52.830	ENSGMOG00000019138	syf2	93	53.081	Gadus_morhua
WBGene00019402	syf-2	97	49.558	ENSGALG00000013639	SYF2	83	52.381	Gallus_gallus
WBGene00019402	syf-2	90	51.429	ENSGAFG00000019435	syf2	87	51.905	Gambusia_affinis
WBGene00019402	syf-2	90	51.415	ENSGACG00000007305	syf2	87	52.133	Gasterosteus_aculeatus
WBGene00019402	syf-2	90	52.607	ENSGAGG00000010670	SYF2	84	52.857	Gopherus_agassizii
WBGene00019402	syf-2	90	50.711	ENSGGOG00000012796	SYF2	86	50.952	Gorilla_gorilla
WBGene00019402	syf-2	90	50.000	ENSHBUG00000020477	syf2	89	50.476	Haplochromis_burtoni
WBGene00019402	syf-2	90	43.128	ENSHGLG00000004304	-	87	44.550	Heterocephalus_glaber_female
WBGene00019402	syf-2	99	47.414	ENSHGLG00000014393	SYF2	85	50.952	Heterocephalus_glaber_female
WBGene00019402	syf-2	99	47.414	ENSHGLG00100014722	SYF2	85	50.952	Heterocephalus_glaber_male
WBGene00019402	syf-2	99	47.679	ENSHCOG00000012904	syf2	68	50.711	Hippocampus_comes
WBGene00019402	syf-2	94	49.099	ENSIPUG00000019859	syf2	87	51.185	Ictalurus_punctatus
WBGene00019402	syf-2	62	47.260	ENSSTOG00000023984	SYF2	99	47.260	Ictidomys_tridecemlineatus
WBGene00019402	syf-2	85	50.754	ENSJJAG00000013301	Syf2	93	50.754	Jaculus_jaculus
WBGene00019402	syf-2	100	48.305	ENSKMAG00000013856	syf2	88	52.857	Kryptolebias_marmoratus
WBGene00019402	syf-2	90	51.415	ENSLBEG00000014425	syf2	87	52.133	Labrus_bergylta
WBGene00019402	syf-2	98	50.435	ENSLACG00000012064	SYF2	87	53.810	Latimeria_chalumnae
WBGene00019402	syf-2	96	50.442	ENSLOCG00000002728	syf2	83	52.607	Lepisosteus_oculatus
WBGene00019402	syf-2	77	37.363	ENSLAFG00000030814	-	95	37.079	Loxodonta_africana
WBGene00019402	syf-2	100	48.291	ENSLAFG00000023150	-	85	52.381	Loxodonta_africana
WBGene00019402	syf-2	99	47.210	ENSMFAG00000041831	SYF2	86	51.905	Macaca_fascicularis
WBGene00019402	syf-2	90	50.237	ENSMMUG00000002968	SYF2	86	51.905	Macaca_mulatta
WBGene00019402	syf-2	99	47.210	ENSMNEG00000030180	SYF2	86	51.905	Macaca_nemestrina
WBGene00019402	syf-2	99	47.639	ENSMLEG00000030248	SYF2	86	51.905	Mandrillus_leucophaeus
WBGene00019402	syf-2	90	51.887	ENSMAMG00000010403	syf2	86	52.607	Mastacembelus_armatus
WBGene00019402	syf-2	90	49.763	ENSMZEG00005006429	syf2	87	50.476	Maylandia_zebra
WBGene00019402	syf-2	85	52.764	ENSMGAG00000002019	SYF2	99	52.764	Meleagris_gallopavo
WBGene00019402	syf-2	90	50.237	ENSMAUG00000018974	Syf2	86	50.476	Mesocricetus_auratus
WBGene00019402	syf-2	85	51.759	ENSMICG00000016191	SYF2	99	51.759	Microcebus_murinus
WBGene00019402	syf-2	90	50.237	ENSMOCG00000022938	Syf2	86	50.476	Microtus_ochrogaster
WBGene00019402	syf-2	90	53.081	ENSMMOG00000002396	syf2	87	53.081	Mola_mola
WBGene00019402	syf-2	90	48.585	ENSMODG00000013951	-	92	48.585	Monodelphis_domestica
WBGene00019402	syf-2	90	51.415	ENSMALG00000010706	syf2	87	51.659	Monopterus_albus
WBGene00019402	syf-2	90	50.711	MGP_CAROLIEiJ_G0026633	Syf2	86	50.952	Mus_caroli
WBGene00019402	syf-2	90	50.711	ENSMUSG00000028821	Syf2	86	50.952	Mus_musculus
WBGene00019402	syf-2	90	50.711	MGP_PahariEiJ_G0028966	Syf2	86	50.952	Mus_pahari
WBGene00019402	syf-2	90	50.711	MGP_SPRETEiJ_G0027613	Syf2	86	50.952	Mus_spretus
WBGene00019402	syf-2	90	50.237	ENSMPUG00000015802	-	85	50.476	Mustela_putorius_furo
WBGene00019402	syf-2	90	50.711	ENSMPUG00000015801	-	85	50.952	Mustela_putorius_furo
WBGene00019402	syf-2	99	47.186	ENSMLUG00000001885	SYF2	85	50.000	Myotis_lucifugus
WBGene00019402	syf-2	98	45.957	ENSNGAG00000007912	Syf2	85	50.000	Nannospalax_galili
WBGene00019402	syf-2	90	46.919	ENSNBRG00000010720	syf2	89	47.393	Neolamprologus_brichardi
WBGene00019402	syf-2	90	50.711	ENSNLEG00000035185	SYF2	86	50.952	Nomascus_leucogenys
WBGene00019402	syf-2	99	46.352	ENSOPRG00000012870	SYF2	86	50.000	Ochotona_princeps
WBGene00019402	syf-2	99	43.966	ENSODEG00000014338	-	86	46.445	Octodon_degus
WBGene00019402	syf-2	99	46.983	ENSODEG00000017664	-	87	50.000	Octodon_degus
WBGene00019402	syf-2	90	49.763	ENSONIG00000008213	syf2	87	50.476	Oreochromis_niloticus
WBGene00019402	syf-2	86	51.485	ENSOANG00000009552	SYF2	99	51.485	Ornithorhynchus_anatinus
WBGene00019402	syf-2	90	50.237	ENSOCUG00000013050	SYF2	85	50.476	Oryctolagus_cuniculus
WBGene00019402	syf-2	90	52.857	ENSORLG00000028820	syf2	89	53.333	Oryzias_latipes
WBGene00019402	syf-2	90	52.607	ENSORLG00020018333	syf2	88	53.333	Oryzias_latipes_hni
WBGene00019402	syf-2	90	52.607	ENSORLG00015014665	syf2	87	53.333	Oryzias_latipes_hsok
WBGene00019402	syf-2	90	52.133	ENSOMEG00000013911	syf2	87	52.857	Oryzias_melastigma
WBGene00019402	syf-2	99	47.210	ENSOGAG00000009962	SYF2	85	50.952	Otolemur_garnettii
WBGene00019402	syf-2	84	37.056	ENSOARG00000006269	-	100	37.056	Ovis_aries
WBGene00019402	syf-2	99	46.809	ENSOARG00000006348	-	85	50.472	Ovis_aries
WBGene00019402	syf-2	90	50.711	ENSPPAG00000036579	SYF2	86	50.952	Pan_paniscus
WBGene00019402	syf-2	90	51.185	ENSPPRG00000001638	-	85	51.429	Panthera_pardus
WBGene00019402	syf-2	98	47.598	ENSPPRG00000001651	-	85	50.952	Panthera_pardus
WBGene00019402	syf-2	90	51.185	ENSPTIG00000005711	-	76	51.185	Panthera_tigris_altaica
WBGene00019402	syf-2	98	48.035	ENSPTIG00000007036	-	85	50.952	Panthera_tigris_altaica
WBGene00019402	syf-2	90	50.711	ENSPTRG00000000352	SYF2	86	50.952	Pan_troglodytes
WBGene00019402	syf-2	99	47.210	ENSPANG00000008139	SYF2	86	51.905	Papio_anubis
WBGene00019402	syf-2	90	50.943	ENSPKIG00000008130	syf2	89	51.185	Paramormyrops_kingsleyae
WBGene00019402	syf-2	99	47.639	ENSPSIG00000011816	SYF2	81	51.185	Pelodiscus_sinensis
WBGene00019402	syf-2	97	48.936	ENSPMGG00000008755	syf2	81	52.133	Periophthalmus_magnuspinnatus
WBGene00019402	syf-2	90	49.289	ENSPEMG00000008283	Syf2	86	50.000	Peromyscus_maniculatus_bairdii
WBGene00019402	syf-2	97	48.673	ENSPCIG00000014235	SYF2	83	51.905	Phascolarctos_cinereus
WBGene00019402	syf-2	90	51.659	ENSPFOG00000004116	syf2	86	52.381	Poecilia_formosa
WBGene00019402	syf-2	90	51.659	ENSPLAG00000006691	syf2	89	52.381	Poecilia_latipinna
WBGene00019402	syf-2	99	47.210	ENSPMEG00000011684	syf2	89	51.429	Poecilia_mexicana
WBGene00019402	syf-2	90	51.659	ENSPREG00000003009	syf2	87	52.381	Poecilia_reticulata
WBGene00019402	syf-2	99	47.639	ENSPPYG00000001713	SYF2	86	50.952	Pongo_abelii
WBGene00019402	syf-2	75	40.000	ENSPCOG00000027011	SYF2	83	40.000	Propithecus_coquereli
WBGene00019402	syf-2	99	42.060	ENSPVAG00000005841	SYF2	85	45.238	Pteropus_vampyrus
WBGene00019402	syf-2	90	49.763	ENSPNYG00000004979	syf2	87	50.476	Pundamilia_nyererei
WBGene00019402	syf-2	97	48.246	ENSPNAG00000015570	syf2	87	51.429	Pygocentrus_nattereri
WBGene00019402	syf-2	90	50.711	ENSRNOG00000060597	Syf2	86	50.952	Rattus_norvegicus
WBGene00019402	syf-2	99	46.352	ENSRBIG00000042970	SYF2	86	49.524	Rhinopithecus_bieti
WBGene00019402	syf-2	99	47.210	ENSRROG00000001347	SYF2	86	51.905	Rhinopithecus_roxellana
WBGene00019402	syf-2	90	50.711	ENSSBOG00000020184	SYF2	86	50.952	Saimiri_boliviensis_boliviensis
WBGene00019402	syf-2	97	47.345	ENSSHAG00000015630	-	84	50.711	Sarcophilus_harrisii
WBGene00019402	syf-2	85	52.261	ENSSHAG00000007152	-	96	52.261	Sarcophilus_harrisii
WBGene00019402	syf-2	90	50.237	ENSSFOG00015023647	syf2	88	50.711	Scleropages_formosus
WBGene00019402	syf-2	100	50.000	ENSSMAG00000009867	syf2	87	53.810	Scophthalmus_maximus
WBGene00019402	syf-2	89	53.333	ENSSDUG00000013072	syf2	87	53.810	Seriola_dumerili
WBGene00019402	syf-2	89	53.333	ENSSLDG00000012677	syf2	87	53.810	Seriola_lalandi_dorsalis
WBGene00019402	syf-2	66	49.032	ENSSARG00000012889	SYF2	63	49.677	Sorex_araneus
WBGene00019402	syf-2	99	48.498	ENSSPUG00000005251	SYF2	82	52.381	Sphenodon_punctatus
WBGene00019402	syf-2	90	52.133	ENSSPAG00000009626	syf2	87	52.857	Stegastes_partitus
WBGene00019402	syf-2	99	47.863	ENSSSCG00000037481	SYF2	85	50.952	Sus_scrofa
WBGene00019402	syf-2	100	47.325	ENSTRUG00000001499	syf2	84	52.133	Takifugu_rubripes
WBGene00019402	syf-2	90	50.472	ENSTNIG00000016912	syf2	93	51.185	Tetraodon_nigroviridis
WBGene00019402	syf-2	90	39.810	ENSTBEG00000017370	SYF2	83	40.000	Tupaia_belangeri
WBGene00019402	syf-2	90	50.711	ENSTTRG00000003550	SYF2	85	50.952	Tursiops_truncatus
WBGene00019402	syf-2	99	47.009	ENSUAMG00000002897	SYF2	85	50.476	Ursus_americanus
WBGene00019402	syf-2	90	50.237	ENSUMAG00000013108	SYF2	85	50.476	Ursus_maritimus
WBGene00019402	syf-2	99	47.210	ENSVPAG00000005705	SYF2	85	50.952	Vicugna_pacos
WBGene00019402	syf-2	88	50.242	ENSVVUG00000027181	-	84	50.476	Vulpes_vulpes
WBGene00019402	syf-2	90	50.237	ENSVVUG00000027175	-	85	50.476	Vulpes_vulpes
WBGene00019402	syf-2	100	46.383	ENSXETG00000022797	syf2	84	50.000	Xenopus_tropicalis
WBGene00019402	syf-2	90	51.659	ENSXMAG00000022698	syf2	87	52.381	Xiphophorus_maculatus